Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011618

Physical Location & Seq

Genomic Coordinates Forward (+)

4329387 .. 4330758

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG051000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGGGGTTATCATGAACTTTTCACATGATATGGATGATGAATATGAGAAAATTTGCAGGAGAATGAACCCACCAAGGGTTGTAGTTGATAATGAAGCCTGCAAGAATGCTACGGTAATAAGGTTGGGCTATTGGCCGCCGACACAGTTGATTAGCCTGGTTGGATTGAAACAACAATCTAATTTAAAATATGGTGTAAAAGTTGTGAGTACAGAAGTGATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

75

Amino Acids

8.54

Weight (kDa)

7.78

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0043691
rosa_laevigata	RLG00000000589
rosa_roxburghii	Rroxscaffold_5G00383330
rosa_rugosa	Rorug04G0423600
rosa_samantha	Rh1CG091800 Rh2AG376600 Rh4CG263600 Rh4DG359500 Rh5AG051000 Rh5BG050200 Rh5BG299400 Rh5CG058800 Rh5DG308300 Rh6AG052400 Rh6CG526700 Rh7AG099100 Rh7CG102400 Rh7CG428200 Rh7DG100900
rosa_wichuraiana	Rw1G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	51
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	156
AoxI	GGCC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	115, 147
BstC8I	GCNNGC	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	13, 26
CviJI	RGCY	4 cut(s)	98, 129, 136, 156
CviKI_1	RGCY	4 cut(s)	98, 129, 136, 156
CviQI	GTAC	1 cut(s)	210
DraI	TTTAAA	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	16, 29
FaiI	YATR	5 cut(s)	14, 27, 32, 45, 192
FatI	CATG	2 cut(s)	12, 25
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	16, 29
Hpy188III	TCNNGA	1 cut(s)	13
HpyCH4III	ACNGT	2 cut(s)	115, 147
HpyCH4V	TGCA	2 cut(s)	57, 102
Hsp92II	CATG	2 cut(s)	16, 29
LpnPI	CCDG	4 cut(s)	43, 112, 143, 170
MluCI	AATT	2 cut(s)	51, 181
MmeI	TCCRAC	1 cut(s)	142
MseI	TTAA	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	158
NlaIII	CATG	2 cut(s)	16, 29
PagI	TCATGA	1 cut(s)	12
PctI	GAATGC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	1 cut(s)	125
SgeI	CNNG	8 cut(s)	25, 38, 70, 87, 111, 115, 169, 170
Sse9I	AATT	2 cut(s)	51, 181
SsiI	CCGC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	115, 147
TasI	AATT	2 cut(s)	51, 181
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	29, 54, 80, 108
XapI	RAATTY	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.