Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011618

Physical Location & Seq

Genomic Coordinates Forward (+)

19578047 .. 19581986

Gene Structure 3940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG091800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAACCCTAGCGATCTCATCGACCTCCACTATAGAGAGAAACTTGGTGTGAGTTTTATCAAATTCGTGAAAAGCACGGGCAGGTCCATCGCCAAGCTTCTTTGCAGGCTGAAGAAGGGGAAAGGCTTCGAAATCGATTGGGTCGAGCTGCCTATAGTTCTAATGTTGGCCACAGATCTAGATTTAGTTGAGGTTAGCATGAACTTTTCACATGATATGGACCATGAATATGAGAAAATTTGCAGGAGAATGAACCCACCAAGGGTTGTGGTTGATAATGAAGCCTGCAAGAATGCTATGGTGAAGTGTAAAACAATTGCTATCTGTCTGCATGAAAATCACCAAAGCCTGGATGGATTGAAACAACAATCTATTTTAAAATATGGTGTAGAAGTTGTGAAGTCAGATGAACAGGGCAAAGAAGCCTATCCTTGCCATCTAGAGCAGCATCACATATCGAACGAGGCCAGTCCTTGCAATTCTGGCCACCGTCATAGTCCTCCTGAAGATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

171

Amino Acids

19.55

Weight (kDa)

6.35

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0043691
rosa_laevigata	RLG00000000589
rosa_roxburghii	Rroxscaffold_5G00383330
rosa_rugosa	Rorug04G0423600
rosa_samantha	Rh1CG091800 Rh2AG376600 Rh4CG263600 Rh4DG359500 Rh5AG051000 Rh5BG050200 Rh5BG299400 Rh5CG058800 Rh5DG308300 Rh6AG052400 Rh6CG526700 Rh7AG099100 Rh7CG102400 Rh7CG428200 Rh7DG100900
rosa_wichuraiana	Rw1G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	349
AcoI	YGGCCR	2 cut(s)	168, 484
AcsI	RAATTY	2 cut(s)	62, 237
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	262, 349
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	2 cut(s)	97, 148
AluI	AGCT	2 cut(s)	97, 148
AoxI	GGCC	3 cut(s)	168, 465, 484
ApeKI	GCWGC	2 cut(s)	148, 445
ApoI	RAATTY	2 cut(s)	62, 237
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	84, 220
AsuHPI	GGTGA	2 cut(s)	313, 332
AsuII	TTCGAA	1 cut(s)	129
AvaII	GGWCC	2 cut(s)	84, 220
BalI	TGGCCA	2 cut(s)	170, 486
BbvI	GCAGC	2 cut(s)	135, 457
BccI	CCATC	3 cut(s)	95, 347, 444
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	350
BfaI	CTAG	3 cut(s)	9, 179, 440
BfmI	CTRYAG	2 cut(s)	31, 153
BfuAI	ACCTGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	149, 446
BlsI	GCNGC	2 cut(s)	150, 447
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	84, 220
BmgT120I	GGNCC	2 cut(s)	84, 220
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	457
Bpu14I	TTCGAA	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 349
Bse1I	ACTGG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	350
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	262, 349
BseNI	ACTGG	1 cut(s)	468
BseXI	GCAGC	2 cut(s)	135, 457
BshFI	GGCC	3 cut(s)	170, 467, 486
BshVI	ATCGAT	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	262, 349
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	170, 467, 486
Bsp119I	TTCGAA	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	13, 175
BspANI	GGCC	3 cut(s)	170, 467, 486
BspDI	ATCGAT	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	72
BspT104I	TTCGAA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	13, 175
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	491
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	107, 286
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	16, 178
BstMBI	GATC	2 cut(s)	13, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	2 cut(s)	31, 153
BstV1I	GCAGC	2 cut(s)	135, 457
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	170, 467, 486
BsuTUI	ATCGAT	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	107, 286
Cfr13I	GGNCC	2 cut(s)	84, 220
ClaI	ATCGAT	1 cut(s)	135
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviAII	CATG	4 cut(s)	199, 212, 224, 332
DpnI	GATC	2 cut(s)	15, 177
DpnII	GATC	2 cut(s)	13, 175
DraI	TTTAAA	1 cut(s)	378
EaeI	YGGCCR	2 cut(s)	168, 484
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	84, 220
Eco57I	CTGAAG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	4 cut(s)	202, 215, 227, 335
FatI	CATG	4 cut(s)	198, 211, 223, 331
Fnu4HI	GCNGC	2 cut(s)	149, 446
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	2 cut(s)	149, 446
FspBI	CTAG	3 cut(s)	9, 179, 440
GluI	GCNGC	2 cut(s)	149, 446
HaeIII	GGCC	3 cut(s)	170, 467, 486
Hin1II	CATG	4 cut(s)	202, 215, 227, 335
HindIII	AAGCTT	1 cut(s)	95
HphI	GGTGA	2 cut(s)	313, 332
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	4 cut(s)	67, 179, 440, 503
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	5 cut(s)	105, 243, 288, 331, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	202, 215, 227, 335
Kzo9I	GATC	2 cut(s)	13, 175
LpnPI	CCDG	9 cut(s)	67, 91, 229, 298, 335, 362, 398, 468, 481
Lsp1109I	GCAGC	2 cut(s)	135, 457
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	3 cut(s)	9, 179, 440
MalI	GATC	2 cut(s)	15, 177
MboI	GATC	2 cut(s)	13, 175
MboII	GAAGA	1 cut(s)	124
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	175
MlsI	TGGCCA	2 cut(s)	170, 486
MluCI	AATT	4 cut(s)	62, 237, 315, 478
MluNI	TGGCCA	2 cut(s)	170, 486
MnlI	CCTC	4 cut(s)	35, 184, 457, 510
Mox20I	TGGCCA	2 cut(s)	170, 486
MroXI	GAANNNNTTC	1 cut(s)	125
MscI	TGGCCA	2 cut(s)	170, 486
MseI	TTAA	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	228
Msp20I	TGGCCA	2 cut(s)	170, 486
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	483
NdeII	GATC	2 cut(s)	13, 175
NlaIII	CATG	4 cut(s)	202, 215, 227, 335
NspV	TTCGAA	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	150, 447
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	84, 220
PsuI	RGATCY	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	2 cut(s)	149, 446
Sau3AI	GATC	2 cut(s)	13, 175
Sau96I	GGNCC	2 cut(s)	84, 220
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	5 cut(s)	27, 86, 99, 150, 195
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	2 cut(s)	31, 153
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	2 cut(s)	84, 220
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	62, 237, 315, 478
SspMI	CTAG	3 cut(s)	9, 179, 440
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	5 cut(s)	21, 129, 135, 144, 458
TasI	AATT	4 cut(s)	62, 237, 315, 478
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TseI	GCWGC	2 cut(s)	148, 445
TspDTI	ATGAA	7 cut(s)	17, 215, 240, 266, 294, 348, 423
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	84, 220
XapI	RAATTY	2 cut(s)	62, 237
XbaI	TCTAGA	2 cut(s)	178, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	3 cut(s)	9, 179, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.