Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011618

Physical Location & Seq

Genomic Coordinates Forward (+)

33778121 .. 33779200

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAACCATAGCGATCTCCTCGACCTCCACTATAGAGAGAAATTTGGTGTCAGTTTTATCAAATTCGTGAAAAGCACGGGGAGGTCCATCGCCGAGCTTCTTTGCAGGCTGAAGAAGGGGAAAGGCTTCGAAATCGATTGGGTCGAGCTGCCTACAGTTCTAATGTTGGCCACAGATCTGGATTTAGTTGAGGTTAGCATGAGCATGAACTTTTCACATGATATGGATCATGAATATGAGAAAATTTGCAGGAGAATGAACCCACCAAGGGTTGTGGTTGATAATGAAGCCTGGAAGAATGCTATGGTGATAAGGGTATGGTCACCCTCTCTCATCCTTTTGTGTGGCTTTTTCGCTTTGTTGAGTTTCTTATGCTTCTCTGTTGAGCTTCTTTTCTTATCTGAGTTTGTTTTCACATATAAATTCTTTGTTCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

146

Amino Acids

17.04

Weight (kDa)

6.07

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0043691
rosa_laevigata	RLG00000000589
rosa_roxburghii	Rroxscaffold_5G00383330
rosa_rugosa	Rorug04G0423600
rosa_samantha	Rh1CG091800 Rh2AG376600 Rh4CG263600 Rh4DG359500 Rh5AG051000 Rh5BG050200 Rh5BG299400 Rh5CG058800 Rh5DG308300 Rh6AG052400 Rh6CG526700 Rh7AG099100 Rh7CG102400 Rh7CG428200 Rh7DG100900
rosa_wichuraiana	Rw1G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	4 cut(s)	41, 62, 243, 422
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	3 cut(s)	97, 148, 388
AluI	AGCT	3 cut(s)	97, 148, 388
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	4 cut(s)	41, 62, 243, 422
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	315, 319
AsuII	TTCGAA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	292
BfmI	CTRYAG	2 cut(s)	31, 153
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	292
Bpu14I	TTCGAA	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	292
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	333
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	135
BshFI	GGCC	1 cut(s)	170
BshVI	ATCGAT	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	13, 175, 226
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	229
BspPI	GGATC	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	3 cut(s)	13, 175, 226
BssT1I	CCWWGG	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	402
BstEII	GGTNACC	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	333
BstKTI	GATC	3 cut(s)	16, 178, 229
BstMBI	GATC	3 cut(s)	13, 175, 226
BstNI	CCWGG	1 cut(s)	292
BstPI	GGTNACC	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	290
BstSFI	CTRYAG	2 cut(s)	31, 153
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	107
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	84
ClaI	ATCGAT	1 cut(s)	135
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviAII	CATG	4 cut(s)	199, 205, 218, 230
CviJI	RGCY	8 cut(s)	97, 109, 126, 148, 170, 290, 348, 388
CviKI_1	RGCY	8 cut(s)	97, 109, 126, 148, 170, 290, 348, 388
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	3 cut(s)	15, 177, 228
DpnII	GATC	3 cut(s)	13, 175, 226
EaeI	YGGCCR	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	131
Eco91I	GGTNACC	1 cut(s)	321
EcoO65I	GGTNACC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	4 cut(s)	202, 208, 221, 233
FatI	CATG	4 cut(s)	198, 204, 217, 229
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	170
Hin1II	CATG	4 cut(s)	202, 208, 221, 233
HphI	GGTGA	2 cut(s)	315, 319
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	3 cut(s)	67, 179, 230
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	105, 249
HpyF3I	CTNAG	1 cut(s)	402
Hsp92II	CATG	4 cut(s)	202, 208, 221, 233
Kzo9I	GATC	3 cut(s)	13, 175, 226
LpnPI	CCDG	5 cut(s)	91, 164, 235, 277, 304
Lsp1109I	GCAGC	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	3 cut(s)	15, 177, 228
MboI	GATC	3 cut(s)	13, 175, 226
MboII	GAAGA	2 cut(s)	124, 307
MflI	RGATCY	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	4 cut(s)	41, 62, 243, 422
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	5 cut(s)	29, 35, 75, 184, 337
Mox20I	TGGCCA	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	439
MslI	CAYNNNNRTG	2 cut(s)	203, 234
Msp20I	TGGCCA	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	292
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	292
NdeII	GATC	3 cut(s)	13, 175, 226
NlaIII	CATG	4 cut(s)	202, 208, 221, 233
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	321
NspV	TTCGAA	1 cut(s)	129
PagI	TCATGA	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	290
PspEI	GGTNACC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	175
RseI	CAYNNNNRTG	2 cut(s)	203, 234
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	3 cut(s)	13, 175, 226
Sau96I	GGNCC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	292
SetI	ASST	6 cut(s)	27, 86, 99, 150, 195, 390
SfcI	CTRYAG	2 cut(s)	31, 153
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	203, 234
Sse9I	AATT	4 cut(s)	41, 62, 243, 422
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	4 cut(s)	21, 129, 135, 144
TasI	AATT	4 cut(s)	41, 62, 243, 422
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	5 cut(s)	17, 221, 246, 272, 300
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	4 cut(s)	41, 62, 243, 422
XmnI	GAANNNNTTC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.