Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011618

Physical Location & Seq

Genomic Coordinates Reverse (-)

51826980 .. 51828619

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG263600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAACCATAGCGATCTCCTCGACCTCCACTATAGAGAGAAATTTGGTGTGAGTTTGATCAAATTCGTGAAAAGCACGGGGAGGTCCATCGCCGAGCTTCTTTGCAAGCTGAAGAAGGGGAAAGGCTTCGAAATTGATTGGGTCGAGCTGCCTACAGTTCTAATGTTGGCCACAGATCTGGATTTAGTTGAGGTTAGCATGAGCATGAACTTTTCACATGATATGGATCATGAATATGAGAAAATTTGCAGGAGAATGAACCCACCAAGGGTTGTGGTTGATAATGGAGCCTGGAAGAATGCTATGGTGATAAGGTTGAAGTGTAAAACAATTGCTATCTATCTGCATGAAAATCACCAAAGCCTGGATGGATTGAAACGACAATCTAATTTAAAATATGGTGTAGAAGTTGTGAAGTCAGATGAACAGGATGAGCAAATGCAAGCTGTCCAAACTGAATTGAACAGCACTGAAACTCATATTCACAATCCTTTAGCATTAAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

169

Amino Acids

19.47

Weight (kDa)

6.44

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0043691
rosa_laevigata	RLG00000000589
rosa_roxburghii	Rroxscaffold_5G00383330
rosa_rugosa	Rorug04G0423600
rosa_samantha	Rh1CG091800 Rh2AG376600 Rh4CG263600 Rh4DG359500 Rh5AG051000 Rh5BG050200 Rh5BG299400 Rh5CG058800 Rh5DG308300 Rh6AG052400 Rh6CG526700 Rh7AG099100 Rh7CG102400 Rh7CG428200 Rh7DG100900
rosa_wichuraiana	Rw1G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	364
AclWI	GGATC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	3 cut(s)	41, 62, 243
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	268, 364
AgsI	TTSAA	3 cut(s)	319, 376, 463
AjnI	CCWGG	2 cut(s)	290, 363
AluBI	AGCT	4 cut(s)	97, 109, 148, 446
AluI	AGCT	4 cut(s)	97, 109, 148, 446
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	3 cut(s)	41, 62, 243
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	319, 347
AsuII	TTCGAA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	95, 362
BciT130I	CCWGG	2 cut(s)	292, 365
BclI	TGATCA	1 cut(s)	57
BfmI	CTRYAG	2 cut(s)	31, 153
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	292, 365
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	292, 365
Bpu14I	TTCGAA	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 364
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	292, 365
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	373, 436
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	268, 364
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	135
BshFI	GGCC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	268, 364
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	13, 57, 175, 226
BspANI	GGCC	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	4 cut(s)	13, 57, 175, 226
BssT1I	CCWWGG	1 cut(s)	266
Bst2UI	CCWGG	2 cut(s)	292, 365
Bst4CI	ACNGT	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	107, 444
BstF5I	GGATG	2 cut(s)	373, 436
BstKTI	GATC	4 cut(s)	16, 60, 178, 229
BstMBI	GATC	4 cut(s)	13, 57, 175, 226
BstNI	CCWGG	2 cut(s)	292, 365
BstSCI	CCNGG	2 cut(s)	290, 363
BstSFI	CTRYAG	2 cut(s)	31, 153
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	373, 436
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	107, 444
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	84
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviAII	CATG	5 cut(s)	199, 205, 218, 230, 347
CviJI	RGCY	8 cut(s)	97, 109, 126, 148, 170, 290, 363, 446
CviKI_1	RGCY	8 cut(s)	97, 109, 126, 148, 170, 290, 363, 446
DpnI	GATC	4 cut(s)	15, 59, 177, 228
DpnII	GATC	4 cut(s)	13, 57, 175, 226
DraI	TTTAAA	1 cut(s)	393
EaeI	YGGCCR	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	290, 363
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	5 cut(s)	202, 208, 221, 233, 350
FatI	CATG	5 cut(s)	198, 204, 217, 229, 346
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	2 cut(s)	380, 443
Fsp4HI	GCNGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	202, 208, 221, 233, 350
HphI	GGTGA	2 cut(s)	319, 347
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	3 cut(s)	67, 179, 230
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	105, 249, 346, 442
Hsp92II	CATG	5 cut(s)	202, 208, 221, 233, 350
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	13, 57, 175, 226
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	7 cut(s)	164, 235, 277, 304, 350, 377, 413
Lsp1109I	GCAGC	1 cut(s)	135
MalI	GATC	4 cut(s)	15, 59, 177, 228
MboI	GATC	4 cut(s)	13, 57, 175, 226
MboII	GAAGA	2 cut(s)	124, 307
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	7 cut(s)	41, 62, 132, 243, 330, 388, 458
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	4 cut(s)	29, 35, 75, 184
Mox20I	TGGCCA	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	2 cut(s)	392, 500
MslI	CAYNNNNRTG	2 cut(s)	203, 234
Msp20I	TGGCCA	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	292, 365
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	292, 365
NdeII	GATC	4 cut(s)	13, 57, 175, 226
NlaIII	CATG	5 cut(s)	202, 208, 221, 233, 350
NlaIV	GGNNCC	1 cut(s)	289
NmeAIII	GCCGAG	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	129
PagI	TCATGA	1 cut(s)	229
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	290, 363
PspGI	CCWGG	2 cut(s)	290, 363
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	175
RseI	CAYNNNNRTG	2 cut(s)	203, 234
SaqAI	TTAA	2 cut(s)	392, 500
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	4 cut(s)	13, 57, 175, 226
Sau96I	GGNCC	1 cut(s)	84
ScrFI	CCNGG	2 cut(s)	292, 365
SetI	ASST	8 cut(s)	27, 86, 99, 111, 150, 195, 317, 448
SfcI	CTRYAG	2 cut(s)	31, 153
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	203, 234
Sse9I	AATT	7 cut(s)	41, 62, 132, 243, 330, 388, 458
StyD4I	CCNGG	2 cut(s)	290, 363
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	3 cut(s)	21, 129, 144
TasI	AATT	7 cut(s)	41, 62, 132, 243, 330, 388, 458
Tru1I	TTAA	2 cut(s)	392, 500
Tru9I	TTAA	2 cut(s)	392, 500
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	6 cut(s)	17, 221, 246, 272, 363, 438
TspRI	CASTG	1 cut(s)	475
Van91I	CCANNNNNTGG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	3 cut(s)	41, 62, 243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.