Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011618

Physical Location & Seq

Genomic Coordinates Forward (+)

39361821 .. 39366865

Gene Structure 5045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG308300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAACCATAGCGACCTCCACTATAGAGAGAAATTTGGTGTGAGTTTTATCAAATTCGTGAAAAGCACGGGGAGGTCCACCGCCGAGCTTCTTTGCAGGCTGAAGAAGGGGAAAGGCTTCGAAATCGATTGGGTGGAGCTGCCTACAGTTCTAATGTTGGCCACAGATCTGGATTTAGTTGAGGTTAGCATGAGCATGAACTTTTCACATGGTATGGATCATGAATATGAGAAAATTTGCAGGAGAATGAACCCACCAAGGGTTGTGGTTGATAATGAAGCCTGGAAGAATGCTATGGTGATAAGGTTGGGCTATTGGCCACTGACACAGAACTACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

113

Amino Acids

13.2

Weight (kDa)

7.81

Isoelectric Point (pI)

16.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0043691
rosa_laevigata	RLG00000000589
rosa_roxburghii	Rroxscaffold_5G00383330
rosa_rugosa	Rorug04G0423600
rosa_samantha	Rh1CG091800 Rh2AG376600 Rh4CG263600 Rh4DG359500 Rh5AG051000 Rh5BG050200 Rh5BG299400 Rh5CG058800 Rh5DG308300 Rh6AG052400 Rh6CG526700 Rh7AG099100 Rh7CG102400 Rh7CG428200 Rh7DG100900
rosa_wichuraiana	Rw1G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	2 cut(s)	159, 317
AcsI	RAATTY	3 cut(s)	32, 53, 234
AcuI	CTGAAG	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	88, 139
AluI	AGCT	2 cut(s)	88, 139
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	2 cut(s)	159, 317
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	3 cut(s)	32, 53, 234
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	75
BalI	TGGCCA	2 cut(s)	161, 319
BbvI	GCAGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	283
BfmI	CTRYAG	3 cut(s)	22, 144, 334
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	126
BshFI	GGCC	2 cut(s)	161, 319
BshVI	ATCGAT	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	161, 319
Bsp119I	TTCGAA	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	166, 217
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	161, 319
BspDI	ATCGAT	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	220
BspPI	GGATC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	166, 217
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	148, 338
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	169, 220
BstMBI	GATC	2 cut(s)	166, 217
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	3 cut(s)	22, 144, 334
BstV1I	GCAGC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	161, 319
BsuTUI	ATCGAT	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	98
CciI	TCATGA	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	126
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	4 cut(s)	190, 196, 209, 221
CviJI	RGCY	8 cut(s)	88, 100, 117, 139, 161, 281, 312, 319
CviKI_1	RGCY	8 cut(s)	88, 100, 117, 139, 161, 281, 312, 319
DpnI	GATC	2 cut(s)	168, 219
DpnII	GATC	2 cut(s)	166, 217
EaeI	YGGCCR	2 cut(s)	159, 317
Eco130I	CCWWGG	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	4 cut(s)	193, 199, 212, 224
FaiI	YATR	9 cut(s)	9, 24, 191, 197, 210, 215, 222, 228, 296
FatI	CATG	4 cut(s)	189, 195, 208, 220
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	161, 319
Hin1II	CATG	4 cut(s)	193, 199, 212, 224
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188III	TCNNGA	3 cut(s)	58, 170, 221
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	148, 338
HpyCH4V	TGCA	2 cut(s)	96, 240
Hsp92II	CATG	4 cut(s)	193, 199, 212, 224
Kzo9I	GATC	2 cut(s)	166, 217
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	82, 155, 226, 268, 295
Lsp1109I	GCAGC	1 cut(s)	126
MalI	GATC	2 cut(s)	168, 219
MboI	GATC	2 cut(s)	166, 217
MboII	GAAGA	2 cut(s)	115, 298
MflI	RGATCY	1 cut(s)	166
MlsI	TGGCCA	2 cut(s)	161, 319
MluCI	AATT	3 cut(s)	32, 53, 234
MluNI	TGGCCA	2 cut(s)	161, 319
MnlI	CCTC	3 cut(s)	26, 66, 175
Mox20I	TGGCCA	2 cut(s)	161, 319
MroXI	GAANNNNTTC	1 cut(s)	116
MscI	TGGCCA	2 cut(s)	161, 319
MslI	CAYNNNNRTG	2 cut(s)	194, 225
Msp20I	TGGCCA	2 cut(s)	161, 319
MspR9I	CCNGG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	283
NdeII	GATC	2 cut(s)	166, 217
NlaIII	CATG	4 cut(s)	193, 199, 212, 224
NmeAIII	GCCGAG	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	194, 225
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	2 cut(s)	166, 217
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	283
SetI	ASST	6 cut(s)	18, 77, 90, 141, 186, 308
SfcI	CTRYAG	3 cut(s)	22, 144, 334
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	194, 225
Sse9I	AATT	3 cut(s)	32, 53, 234
SsiI	CCGC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	148, 338
TaqI	TCGA	2 cut(s)	120, 126
TasI	AATT	3 cut(s)	32, 53, 234
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	5 cut(s)	17, 212, 237, 263, 291
TspRI	CASTG	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	3 cut(s)	32, 53, 234
XmnI	GAANNNNTTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.