Rh6AG052400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
7703326 .. 7704144
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG052400.1

Sequence Viewer

Length: 276 bp
ATGAACCCTAGCGATCTCGTCTCGTCGACCTCCACTACAGACAGAGAGAAATTTGGTGTGAGTTTTATCAAATTCGTGAAAAGCACGGGCAGGTCCATCACCGAGCTTCTTTGCAGGCTGAAGAAGGGGAAAGGCTTCGAAATCGATTGGGTCGAGCTGCCTATAGTTCTAATGTTCGCCACAGATCTGGATTTAGTTGAGGTTAGCATGAACTTTTCACATGATATGGATCATGAATATGAGAAAATTTGCAAGAGAATGAGTTCCATTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.38

Weight (kDa)

5.61

Isoelectric Point (pI)

23.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 26
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 3 cut(s) 50, 71, 246
AcuI CTGAAG 1 cut(s) 140
AluBI AGCT 2 cut(s) 106, 157
AluI AGCT 2 cut(s) 106, 157
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 3 cut(s) 50, 71, 246
Asp700I GAANNNNTTC 2 cut(s) 134, 262
AspS9I GGNCC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 138
AvaII GGWCC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 144
BccI CCATC 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 36, 162
BfuAI ACCTGC 1 cut(s) 81
BglII AGATCT 1 cut(s) 184
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 138
Bsa29I ATCGAT 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 144
BseJI GATNNNNATC 1 cut(s) 228
BseMI GCAATG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
Bsp119I TTCGAA 1 cut(s) 138
Bsp143I GATC 3 cut(s) 13, 184, 229
BspDI ATCGAT 1 cut(s) 144
BspHI TCATGA 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 1 cut(s) 237
BspT104I TTCGAA 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 267
BssMI GATC 3 cut(s) 13, 184, 229
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 116
BstKTI GATC 3 cut(s) 16, 187, 232
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 3 cut(s) 13, 184, 229
BstSFI CTRYAG 2 cut(s) 36, 162
BstV1I GCAGC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 144
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 116
CciI TCATGA 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 144
CviAII CATG 3 cut(s) 208, 221, 233
CviJI RGCY 4 cut(s) 106, 118, 135, 157
CviKI_1 RGCY 4 cut(s) 106, 118, 135, 157
DpnI GATC 3 cut(s) 15, 186, 231
DpnII GATC 3 cut(s) 13, 184, 229
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 3 cut(s) 211, 224, 236
FaiI YATR 7 cut(s) 164, 209, 222, 227, 234, 240, 274
FatI CATG 3 cut(s) 207, 220, 232
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 211, 224, 236
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 27
Hpy188III TCNNGA 3 cut(s) 76, 188, 233
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 114, 252, 272
Hsp92II CATG 3 cut(s) 211, 224, 236
Kzo9I GATC 3 cut(s) 13, 184, 229
LpnPI CCDG 3 cut(s) 76, 100, 173
Lsp1109I GCAGC 1 cut(s) 144
MaeI CTAG 1 cut(s) 9
MalI GATC 3 cut(s) 15, 186, 231
MboI GATC 3 cut(s) 13, 184, 229
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 184
MluCI AATT 3 cut(s) 50, 71, 246
MnlI CCTC 2 cut(s) 40, 193
MroXI GAANNNNTTC 2 cut(s) 134, 262
MslI CAYNNNNRTG 1 cut(s) 237
NdeII GATC 3 cut(s) 13, 184, 229
NlaIII CATG 3 cut(s) 211, 224, 236
NspV TTCGAA 1 cut(s) 138
PagI TCATGA 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 2 cut(s) 134, 262
PkrI GCNGC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 237
SalI GTCGAC 1 cut(s) 25
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 3 cut(s) 13, 184, 229
Sau96I GGNCC 1 cut(s) 93
SetI ASST 5 cut(s) 32, 95, 108, 159, 204
SfcI CTRYAG 2 cut(s) 36, 162
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 3 cut(s) 50, 71, 246
SspMI CTAG 1 cut(s) 9
TaqI TCGA 4 cut(s) 26, 138, 144, 153
TasI AATT 3 cut(s) 50, 71, 246
TseI GCWGC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 17, 224, 249
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 3 cut(s) 50, 71, 246
XmiI GTMKAC 1 cut(s) 26
XmnI GAANNNNTTC 2 cut(s) 134, 262
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.