Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011618

Physical Location & Seq

Genomic Coordinates Reverse (-)

68119184 .. 68120579

Gene Structure 1396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG526700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTGGCCACAGATCTGGATTTAGTTGAGGTTAGCTTGAACTTTTCACATGATATGGATCATGAATATGAGAAAATTTGCAGGAGAATGAACCCACCAAGGGTTGTGGTTGATAATGAAGCCTGCAAGAATGCTATGGTGATAAGGGTGAAGTGTAAAACAATTGCTATCTGTCTGCATGAAAATCACCAAAGCCTGGATGGATTGAAACGACAATCTAATTTAAAATATGGTGTAGAAGTTGTGAAGTCAGATGAACAGGTTTATCTTGTTAAAAGGATGAGCAAATGCAAGCTGTCCAAACTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

103

Amino Acids

11.91

Weight (kDa)

8.62

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0043691
rosa_laevigata	RLG00000000589
rosa_roxburghii	Rroxscaffold_5G00383330
rosa_rugosa	Rorug04G0423600
rosa_samantha	Rh1CG091800 Rh2AG376600 Rh4CG263600 Rh4DG359500 Rh5AG051000 Rh5BG050200 Rh5BG299400 Rh5CG058800 Rh5DG308300 Rh6AG052400 Rh6CG526700 Rh7AG099100 Rh7CG102400 Rh7CG428200 Rh7DG100900
rosa_wichuraiana	Rw1G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	196
AclWI	GGATC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	100, 196
AgsI	TTSAA	2 cut(s)	40, 208
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	2 cut(s)	36, 295
AluI	AGCT	2 cut(s)	36, 295
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	75
AsuHPI	GGTGA	3 cut(s)	151, 160, 179
BalI	TGGCCA	1 cut(s)	8
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 196
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	205, 285
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	100, 196
BshFI	GGCC	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	100, 196
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	13, 58
BspANI	GGCC	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	61
BspPI	GGATC	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	2 cut(s)	13, 58
BssT1I	CCWWGG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	124, 293
BstF5I	GGATG	2 cut(s)	205, 285
BstKTI	GATC	2 cut(s)	16, 61
BstMBI	GATC	2 cut(s)	13, 58
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	205, 285
Cac8I	GCNNGC	2 cut(s)	124, 293
CciI	TCATGA	1 cut(s)	61
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	3 cut(s)	50, 62, 179
CviJI	RGCY	5 cut(s)	8, 36, 122, 195, 295
CviKI_1	RGCY	5 cut(s)	8, 36, 122, 195, 295
DpnI	GATC	2 cut(s)	15, 60
DpnII	GATC	2 cut(s)	13, 58
DraI	TTTAAA	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	3 cut(s)	53, 65, 182
FaiI	YATR	7 cut(s)	51, 56, 63, 69, 137, 180, 231
FatI	CATG	3 cut(s)	49, 61, 178
FokI	GGATG	2 cut(s)	212, 292
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	53, 65, 182
HphI	GGTGA	3 cut(s)	151, 160, 179
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	17, 62
HpyCH4V	TGCA	4 cut(s)	81, 126, 178, 291
Hsp92II	CATG	3 cut(s)	53, 65, 182
Kzo9I	GATC	2 cut(s)	13, 58
LpnPI	CCDG	6 cut(s)	2, 67, 136, 182, 209, 245
MalI	GATC	2 cut(s)	15, 60
MboI	GATC	2 cut(s)	13, 58
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	4 cut(s)	75, 162, 220, 307
MluNI	TGGCCA	1 cut(s)	8
MnlI	CCTC	1 cut(s)	22
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	2 cut(s)	224, 273
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	197
NdeII	GATC	2 cut(s)	13, 58
NlaIII	CATG	3 cut(s)	53, 65, 182
PagI	TCATGA	1 cut(s)	61
PctI	GAATGC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	224, 273
Sau3AI	GATC	2 cut(s)	13, 58
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	4 cut(s)	33, 38, 264, 297
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	4 cut(s)	75, 162, 220, 307
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	98
TasI	AATT	4 cut(s)	75, 162, 220, 307
Tru1I	TTAA	2 cut(s)	224, 273
Tru9I	TTAA	2 cut(s)	224, 273
TspDTI	ATGAA	5 cut(s)	78, 104, 132, 195, 270
Van91I	CCANNNNNTGG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.