Rh3CG230500

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007834
Physical Location & Seq
Reverse (-)
21744347 .. 21746482
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG230500.1

Sequence Viewer

Length: 699 bp
ATGTATTTCAAAGACTTCAGCACATCAGAGACGAGGGCGTGCTGGCCTGGCCGTGTCCAACCTGGAGTTTGCTACAGACTACATCCAAAAATGATTCACGATGCAATGCTCCAATATCAGTTACCTGAAATTTTCCGGACACCTTTGCAAGAGATATGCCTCCGTATAAAGAGTTCGCAGCCTGGAGCTGTTGGATCATTTTTGGCAAAGGCACTTCAACCACCAGATTCTTTTGCAGTTCAAAATGCCATCGAACTTCTCAAAACTATTGGAGCTTTAGATGATATGGAGGAGCTTACTCTGCTTGCTCATCGAGACCCATTTATCCTACCAATAGATAGGAAAGAGGAAGCTGATGCTGCAAAAAGATCCTTTGCTGGTGATTCTTTTAGTGATCACATAGTAGTTGTTAAGGCTTTTGAAGGATGGAAAGATACAAAACGTAATGGATCAGAAAAATCATTCTGTTGGGATAACTTTTTATCACCAGCAACCTTGCAGATGATGGAGGATATGAGGGTGCAGTTTGTAGATCTATTATCAAACATTGGTTTTGTCGACAAATCCAGGGGTGCTAATAGATTGCGCCGTGAACTTGACAGGCTTTTAAACAGGAAGACAGCATTGGACGTCTCAAGTGAGGGAAAGGGGCTGGTATCTGCTGTGGTTGAGCCATTGCATAGCTCAAATGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042623 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

232

Amino Acids

26.16

Weight (kDa)

6.53

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 633
AccI GTMKAC 1 cut(s) 558
AccIII TCCGGA 1 cut(s) 135
AclWI GGATC 3 cut(s) 202, 363, 457
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 630
AgsI TTSAA 4 cut(s) 10, 218, 242, 422
AjnI CCWGG 4 cut(s) 46, 61, 181, 566
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AluBI AGCT 5 cut(s) 188, 275, 295, 353, 684
AluI AGCT 5 cut(s) 188, 275, 295, 353, 684
Alw26I GTCTC 3 cut(s) 23, 309, 637
AlwI GGATC 3 cut(s) 202, 363, 457
Aor13HI TCCGGA 1 cut(s) 135
AoxI GGCC 2 cut(s) 44, 49
ApeKI GCWGC 2 cut(s) 178, 359
ApoI RAATTY 1 cut(s) 129
AspLEI GCGC 1 cut(s) 588
AsuHPI GGTGA 2 cut(s) 392, 477
BbsI GAAGAC 1 cut(s) 623
BbvI GCAGC 2 cut(s) 190, 346
BccI CCATC 3 cut(s) 257, 420, 499
BceAI ACGGC 2 cut(s) 36, 573
BciT130I CCWGG 4 cut(s) 48, 63, 183, 568
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 3 cut(s) 23, 309, 637
BfmI CTRYAG 1 cut(s) 73
BglII AGATCT 1 cut(s) 532
BisI GCNGC 2 cut(s) 179, 360
BlsI GCNGC 2 cut(s) 180, 361
Bme1390I CCNGG 4 cut(s) 48, 63, 183, 568
BmrFI CCNGG 4 cut(s) 48, 63, 183, 568
BmsI GCATC 2 cut(s) 91, 346
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 2 cut(s) 84, 204
BpuEI CTTGAG 1 cut(s) 619
BsaHI GRCGYC 1 cut(s) 630
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 111, 674
BseAI TCCGGA 1 cut(s) 135
BseBI CCWGG 4 cut(s) 48, 63, 183, 568
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 2 cut(s) 82, 431
BseMI GCAATG 2 cut(s) 111, 674
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 2 cut(s) 190, 346
BsgI GTGCAG 1 cut(s) 542
BshFI GGCC 2 cut(s) 46, 51
BsiSI CCGG 1 cut(s) 136
BsmAI GTCTC 3 cut(s) 23, 309, 637
BsmBI CGTCTC 2 cut(s) 23, 637
BsnI GGCC 2 cut(s) 46, 51
Bso31I GGTCTC 1 cut(s) 309
Bsp13I TCCGGA 1 cut(s) 135
Bsp143I GATC 5 cut(s) 194, 368, 394, 449, 532
BspANI GGCC 2 cut(s) 46, 51
BspEI TCCGGA 1 cut(s) 135
BspPI GGATC 3 cut(s) 202, 363, 457
BspTNI GGTCTC 1 cut(s) 309
BsrDI GCAATG 2 cut(s) 111, 674
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 5 cut(s) 194, 368, 394, 449, 532
BssNI GRCGYC 1 cut(s) 630
Bst2UI CCWGG 4 cut(s) 48, 63, 183, 568
BstACI GRCGYC 1 cut(s) 630
BstC8I GCNNGC 3 cut(s) 40, 44, 306
BstF5I GGATG 2 cut(s) 82, 431
BstHHI GCGC 1 cut(s) 588
BstKTI GATC 5 cut(s) 197, 371, 397, 452, 535
BstMAI GTCTC 3 cut(s) 23, 309, 637
BstMBI GATC 5 cut(s) 194, 368, 394, 449, 532
BstMWI GCNNNNNNNGC 3 cut(s) 48, 301, 359
BstNI CCWGG 4 cut(s) 48, 63, 183, 568
BstSCI CCNGG 4 cut(s) 46, 61, 181, 566
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 190, 346
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 2 cut(s) 368, 532
BstYI RGATCY 2 cut(s) 368, 532
BsuRI GGCC 2 cut(s) 46, 51
BtsCI GGATG 2 cut(s) 82, 431
Cac8I GCNNGC 3 cut(s) 40, 44, 306
CfoI GCGC 1 cut(s) 588
DpnI GATC 5 cut(s) 196, 370, 396, 451, 534
DpnII GATC 5 cut(s) 194, 368, 394, 449, 532
DraI TTTAAA 1 cut(s) 609
EaeI YGGCCR 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 309
EcoRII CCWGG 4 cut(s) 46, 61, 181, 566
Esp3I CGTCTC 2 cut(s) 23, 637
FaiI YATR 6 cut(s) 157, 167, 287, 401, 515, 681
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 2 cut(s) 179, 360
FokI GGATG 2 cut(s) 69, 438
Fsp4HI GCNGC 2 cut(s) 179, 360
GlaI GCGC 1 cut(s) 587
GluI GCNGC 2 cut(s) 179, 360
GsuI CTGGAG 2 cut(s) 84, 204
HaeIII GGCC 2 cut(s) 46, 51
HapII CCGG 1 cut(s) 136
HhaI GCGC 1 cut(s) 588
Hin1I GRCGYC 1 cut(s) 630
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 3 cut(s) 94, 227, 383
HpaII CCGG 1 cut(s) 136
HphI GGTGA 2 cut(s) 392, 477
Hpy166II GTNNAC 3 cut(s) 559, 593, 694
Hpy188I TCNGA 2 cut(s) 28, 454
Hpy188III TCNNGA 3 cut(s) 98, 136, 314
Hpy8I GTNNAC 3 cut(s) 559, 593, 694
HpyAV CCTTC 1 cut(s) 416
HpyCH4IV ACGT 2 cut(s) 442, 630
HpyCH4V TGCA 7 cut(s) 104, 148, 236, 362, 499, 523, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 301, 359
HpySE526I ACGT 2 cut(s) 442, 630
Hsp92I GRCGYC 1 cut(s) 630
HspAI GCGC 1 cut(s) 586
Kpn2I TCCGGA 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 5 cut(s) 194, 368, 394, 449, 532
LmnI GCTCC 4 cut(s) 114, 185, 272, 292
Lsp1109I GCAGC 2 cut(s) 190, 346
LweI GCATC 2 cut(s) 91, 346
MaeII ACGT 2 cut(s) 442, 630
MaeIII GTNAC 1 cut(s) 120
MalI GATC 5 cut(s) 196, 370, 396, 451, 534
MboI GATC 5 cut(s) 194, 368, 394, 449, 532
MboII GAAGA 1 cut(s) 628
MflI RGATCY 2 cut(s) 368, 532
MluCI AATT 1 cut(s) 129
MmeI TCCRAC 2 cut(s) 82, 172
MnlI CCTC 7 cut(s) 27, 170, 283, 340, 502, 510, 634
MroI TCCGGA 1 cut(s) 135
MseI TTAA 2 cut(s) 411, 608
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 4 cut(s) 48, 63, 183, 568
MvaI CCWGG 4 cut(s) 48, 63, 183, 568
MwoI GCNNNNNNNGC 3 cut(s) 48, 301, 359
NdeII GATC 5 cut(s) 194, 368, 394, 449, 532
PfeI GAWTC 3 cut(s) 94, 227, 383
PkrI GCNGC 2 cut(s) 180, 361
Psp6I CCWGG 4 cut(s) 46, 61, 181, 566
PspGI CCWGG 4 cut(s) 46, 61, 181, 566
PsrI GAACNNNNNNTAC 2 cut(s) 157, 189
PsuI RGATCY 2 cut(s) 368, 532
SalI GTCGAC 1 cut(s) 557
SaqAI TTAA 2 cut(s) 411, 608
SatI GCNGC 2 cut(s) 179, 360
Sau3AI GATC 5 cut(s) 194, 368, 394, 449, 532
ScrFI CCNGG 4 cut(s) 48, 63, 183, 568
SfaNI GCATC 2 cut(s) 91, 346
SfcI CTRYAG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 634
SmoI CTYRAG 1 cut(s) 634
Sse9I AATT 1 cut(s) 129
StyD4I CCNGG 4 cut(s) 46, 61, 181, 566
TaiI ACGT 2 cut(s) 445, 633
TaqI TCGA 3 cut(s) 252, 313, 558
TasI AATT 1 cut(s) 129
TfiI GAWTC 3 cut(s) 94, 227, 383
Tru1I TTAA 2 cut(s) 411, 608
Tru9I TTAA 2 cut(s) 411, 608
TseI GCWGC 2 cut(s) 178, 359
TspGWI ACGGA 1 cut(s) 152
XapI RAATTY 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 558
ZraI GACGTC 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.