Rh3CG230600

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007834
Physical Location & Seq
Reverse (-)
21749552 .. 21758220
8669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG230600.1

Sequence Viewer

Length: 3150 bp
ATGTGTTGTTTGCTCTTAACTTTGCGCGCAACCACCAACCACTTTCTCCCCACTCACTTCCTCGCCGCTCCACGACTCCTCACTTTTCGCTCTGCCATCTCAACTCTCGCCATGTCCAGCCGCTCCAACTTCCAGGGTGGCCGCAGCCGAGGCGGCCCTAACTCCCGCGGCGGCGCTCGCCGTGGAGGCGGTGGTCGCGGCGGCGGAGGCCGAGGAGGAGGAGGACGCGGCGGCGGCGGCGGCCGAGGCGGCGAACAGCGCTGGTGGGACCCCGTGTGGCGAGCGGAGCGACTGAGGCAACAAGCCGCCGAGATGGAAGTTCTTGATGCGAGTGAGTATTGGGGGAAGATGGAGCAGTTCAGAAGCGGAGCGGAGCAGGAGATGATAATAAGACGTAATTTTAGTCGGCATGATCAGCAAACCCTATATGAAATGGCCGATGAACTAGGGCTTCACTTCCATGCATATAATAAGGGGAAGGCTCTTGTGGTCAGCAAGGTTCCTCTGCCAGATTATCGGGCAGACCTTGATGATGTTCATGGTTCCACACAAAAAGAGATTCGGATGTCTACAGAGACTGCAGAGAGAGTCGGGAGTCTTTTGCAAAGCTCGCAGGGGCAGGGAAGTAAGCAAGCTTTTGGTAATGTTGCTTCAGTGGCGTCTGGGTCTGGCCAGGGGAACCAACTAACAACTGTTAGTGAAAATACAACCAAACCCAGCTCCAGCTTGGAGCCTGATACTGTTAAGGAGAAAGAGAAACTTAGCCTTCAACTTAAGGAGTCGCAGGAAAAAATGAAGGTAAGTAATAGTCTTAAAGCAATGCTGACATTCCGAGAAAAGCTTCCTGCATTCAATGTGAAGTCTGAGTTCCTGAGAGCTGTTTCTGAAAATCAGGTGTTGGTAGTCTCGGGTGAGACAGGTTGTGGCAAAACAACACAACTTCCTCAGTTTATTCTAGAAGATGAGATTTCACGTCTGCATGGTGCTGAGTGCAACATAATATGCACTCAGCCTCGCCGTATATCTGCCGTGTCTGTTGCTGCTCGTATATCCTCTGAAAGGGGAGAGAATCTTGGTGAAACTGTTGGTTATCAGATTCGACTGGAATCAAAGCGCTCTGCTCAAACAAGATTGCTATTTTGCACAACTGGAGTATTACTTCGTCAGTTGGTTCAAGACCCACAGTTAACTGGCGTGAGCCATTTGTTGGTTGATGAAATCCATGAAAGAGGCATGAACGAGGACTTTTTACTAATAATTTTGCGAGACCTTCTTCCTCGACGTCCAGATCTACGACTTATTCTAATGAGTGCTACCATCAATGCTGACTTGTTTTCCAAATACTTTGGAAATGCCCCAAAAATACATATACCGGGATTAACGTTCCCTGTGGCAGAGCTATTTCTAGAAGACGTTTTGGAGAAAACTCATTATATAGTCAAGTCAGAGTCCGACAAGATGGAGAGGGGAAATTCCAGGAGAAGGAGACAGCAAGACTCCAAGAAGGATCCCTTAACTGAACTATTTGAGGATGCTGATATTGATCTTCACTACAAAAGTTACAGCACATCTACAAGAAAGTCTCTAGAAGCTTGGTCTGGTTCACAGCTTGATTTGGGTCTGGTGGAGGCAACTGTGGAACATATATGTCGCTATGAGAGAGATGGAGCAGTTCTTGTTTTCCTTACAGGCTGGGATGATATATCAAAGTTACTTGACAAAATTAAGGGAAATAGATTCCTTGGAGATCCTGAGAAGTTCATGGTTCTTCCCCTGCATGGGTCAATGCCTACTATTAATCAACGAGAAATATTTGATCATCCTCCCACTACCAAAAGAAAAATTGTGCTAGCAACAAACATTGCAGAGAGCAGTATTACCATAGATGATGTCGTGTATGTCATAGACTGTGGAAAGGCAAAGGAAACAAGTTATGATGCTTTAAACAAGTTGGCTTGTCTATTACCATCATGGATTTCAAAGGCTTCAGCACATCAGAGACGAGGGCGTGCTGGCCGTGTCCAACCTGGAGTTTGTTACAGACTATACCCAAAAATGATTCATGATGCAATGCTCCAATATCAGTTACCTGAAATTCTCCGGACACCTTTGCAAGAGTTATGCCTCCATATAAAGAGTTTGCAGCTTGGAGCTGTTGGATCATTTTTGGCAAAGGCACTTCAACCACCAGATTCTCTTGCAGTTCAAAATGCCATCGAACTTCTCAAAACTATTGGAGCTTTAGATGATAGGGAGGAGCTTACTCCGCTTGGTCGCCATCTTTGTACACTACCATTGGATCCAAACATTGGAAAGATGCTTTTAATGGGTTCTATCTTTCAATGCCTCAATCCTGCCTTAACAATTGCTGCTGCCCTAGCTCATCGAGACCCATTTATCCTACCAATAGATAGGAAAGAGGAAGCTGATGCTGCAAAAAGATCCTTTGCTGGTGATTCTTTCAGTGATCACATAGCAGTTGTTAAAGCTTTTGAAGGATGGAAAGATGCAAAACATAATGGATCAGGAAAATCATTCTGTTGGGATAACTTTTTATCACCAGTAACCTTGCAGATGATGGAGGATATGAGGTTGCAGTTTGTAGATCTATTATCGAACATTGGCTTTGTCAACAAATCCAGGGGTGCTAACGCTTACAACCAATACAGCCATGACTTGGAGATGGTGTCTGCAATTCTTTGTGCTGGGCTTTACCCAAATGTTGTGCAGTGTAAAAGAAGAGGAAAGCGGACAGCATTCTACACCAAAGAAGTTGGTAAAGTCGATATCCATCCTGGATCAGTCAATGCTGGGGTTCACTTATTCCCTCTGCCTTACATGGTATATAGTGAAAAAGTGAAGACAGCCAGCATTTACATCAGAGACTCTACAAATATATCAGATTATTCTTTGCTTTTGTTTGGTGGTAATCTCATTCCAACCAAAACTGGAGAGGGCATTGAGATGCTTGGAGGTTACCTTCATTTCTCTGCATCAAAGAGTGTTTTGGAGTTGATTCGGAAATTGCGCCGTGAACTTGACAAGCTTTTAAACAGGAAGATTGACAACCCAGCATTGGATGTCTCTATTGAGGGAAAGGGAGTAGTATCTGCTGTGGTTGAGCTATTGCATAGCCCAAATGTACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042623 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

1049

Amino Acids

116.38

Weight (kDa)

8.79

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 288 - 442 3.1e-09 DEAD/DEAH box helicase
Helicase_C PF00271 547 - 674 4.6e-15 Helicase conserved C-terminal domain
WHD_HA2 PF04408 738 - 766 1e-09 Helicase associated domain (HA2), winged-helix
HA2_C PF21010 767 - 826 2.4e-13 Helicase associated domain (HA2), ratchet-like
OB_NTP_bind PF07717 897 - 977 1e-17 Oligonucleotide/oligosaccharide-binding (OB)-fold
RNA_hel_CTD PF26026 987 - 1044 1.5e-20 C-terminal domain in RNA helicases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1285
AccB7I CCANNNNNTGG 3 cut(s) 1207, 2309, 2677
AccBSI CCGCTC 4 cut(s) 68, 123, 284, 371
AccI GTMKAC 1 cut(s) 569
AccII CGCG 4 cut(s) 27, 168, 198, 228
AccIII TCCGGA 1 cut(s) 2100
AclI AACGTT 1 cut(s) 1382
AclWI GGATC 9 cut(s) 1502, 1515, 1742, 2167, 2294, 2307, 2436, 2530, 2806
AcoI YGGCCR 5 cut(s) 139, 241, 435, 670, 2014
AcsI RAATTY 2 cut(s) 1471, 2094
AcuI CTGAAG 2 cut(s) 636, 1971
AcyI GRCGYC 2 cut(s) 659, 1282
AfaI GTAC 2 cut(s) 2287, 3144
AfeI AGCGCT 2 cut(s) 260, 1115
AfiI CCNNNNNNNGG 8 cut(s) 1059, 1207, 1482, 1778, 1779, 2309, 2677, 3076
AflII CTTAAG 1 cut(s) 773
AgsI TTSAA 8 cut(s) 770, 853, 1175, 1980, 2183, 2207, 2342, 2495
AjiI CACGTC 1 cut(s) 974
AjnI CCWGG 6 cut(s) 132, 672, 1475, 2026, 2639, 2794
AlwI GGATC 9 cut(s) 1502, 1515, 1742, 2167, 2294, 2307, 2436, 2530, 2806
AlwNI CAGNNNCTG 1 cut(s) 578
Ama87I CYCGRG 1 cut(s) 907
Aor13HI TCCGGA 1 cut(s) 2100
Aor51HI AGCGCT 2 cut(s) 260, 1115
AoxI GGCC 7 cut(s) 139, 154, 208, 241, 435, 670, 2014
ApeKI GCWGC 6 cut(s) 144, 1040, 2143, 2369, 2372, 2432
ApoI RAATTY 2 cut(s) 1471, 2094
AseI ATTAAT 1 cut(s) 1797
Asp700I GAANNNNTTC 1 cut(s) 840
AspLEI GCGC 6 cut(s) 27, 29, 176, 261, 1116, 3030
AspS9I GGNCC 2 cut(s) 155, 268
AsuC2I CCSGG 1 cut(s) 1374
AsuHPI GGTGA 4 cut(s) 923, 1088, 2465, 2550
AsuNHI GCTAGC 1 cut(s) 1849
AvaI CYCGRG 1 cut(s) 907
AvaII GGWCC 1 cut(s) 268
BalI TGGCCA 1 cut(s) 672
BamHI GGATCC 2 cut(s) 1507, 2299
BarI GAAGNNNNNNTAC 2 cut(s) 634, 666
BbsI GAAGAC 2 cut(s) 1416, 2867
BbvI GCAGC 6 cut(s) 156, 1027, 2155, 2356, 2359, 2419
BceAI ACGGC 5 cut(s) 165, 1002, 1013, 2001, 3015
BciT130I CCWGG 6 cut(s) 134, 674, 1477, 2028, 2641, 2796
BclI TGATCA 3 cut(s) 412, 1816, 2467
BcnI CCSGG 1 cut(s) 1374
BfaI CTAG 6 cut(s) 446, 956, 1406, 1586, 1850, 2378
BfmI CTRYAG 2 cut(s) 570, 579
BfoI RGCGCY 3 cut(s) 177, 262, 1117
BfrI CTTAAG 1 cut(s) 773
BglI GCCNNNNNGGC 3 cut(s) 153, 186, 249
BglII AGATCT 2 cut(s) 1288, 2605
Bme1390I CCNGG 7 cut(s) 134, 674, 1374, 1477, 2028, 2641, 2796
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 907
BmgBI CACGTC 1 cut(s) 974
BmgT120I GGNCC 2 cut(s) 155, 268
BmiI GGNNCC 8 cut(s) 269, 270, 501, 544, 680, 732, 1509, 2301
BmrFI CCNGG 7 cut(s) 134, 674, 1374, 1477, 2028, 2641, 2796
BmsI GCATC 9 cut(s) 316, 1522, 1927, 2056, 2307, 2419, 2497, 2955, 3002
BmtI GCTAGC 1 cut(s) 1853
BpiI GAAGAC 2 cut(s) 1416, 2867
BpmI CTGGAG 4 cut(s) 706, 1170, 2049, 2970
BpuMI CCSGG 1 cut(s) 1374
BsaBI GATNNNNATC 2 cut(s) 1542, 2790
BsaHI GRCGYC 2 cut(s) 659, 1282
BsaI GGTCTC 2 cut(s) 1260, 2382
BsaJI CCNNGG 9 cut(s) 133, 148, 166, 181, 211, 244, 673, 1741, 2640
BsaWI WCCGGW 1 cut(s) 2100
BsaXI ACNNNNNCTCC 2 cut(s) 2672, 2702
Bsc4I CCNNNNNNNGG 8 cut(s) 1059, 1207, 1482, 1778, 1779, 2309, 2677, 3076
Bse1I ACTGG 5 cut(s) 1107, 1153, 1195, 2561, 2953
Bse3DI GCAATG 3 cut(s) 825, 1860, 2076
Bse8I GATNNNNATC 2 cut(s) 1542, 2790
BseAI TCCGGA 1 cut(s) 2100
BseBI CCWGG 6 cut(s) 134, 674, 1477, 2028, 2641, 2796
BseDI CCNNGG 9 cut(s) 133, 148, 166, 181, 211, 244, 673, 1741, 2640
BseGI GGATG 7 cut(s) 570, 1537, 1702, 1819, 2504, 2791, 3085
BseJI GATNNNNATC 2 cut(s) 1542, 2790
BseLI CCNNNNNNNGG 8 cut(s) 1059, 1207, 1482, 1778, 1779, 2309, 2677, 3076
BseMI GCAATG 3 cut(s) 825, 1860, 2076
BseMII CTCAG 7 cut(s) 284, 855, 863, 959, 978, 1022, 1743
BseNI ACTGG 5 cut(s) 1107, 1153, 1195, 2561, 2953
BsePI GCGCGC 1 cut(s) 25
BseRI GAGGAG 5 cut(s) 68, 228, 231, 234, 2270
BseX3I CGGCCG 1 cut(s) 241
BseXI GCAGC 6 cut(s) 156, 1027, 2155, 2356, 2359, 2419
BseYI CCCAGC 5 cut(s) 716, 1692, 2705, 2810, 3070
BsgI GTGCAG 1 cut(s) 2747
Bsh1236I CGCG 4 cut(s) 27, 168, 198, 228
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 7 cut(s) 141, 156, 210, 243, 437, 672, 2016
BsiEI CGRYCG 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 2 cut(s) 1373, 2101
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 8 cut(s) 1059, 1207, 1482, 1778, 1779, 2309, 2677, 3076
BsmBI CGTCTC 1 cut(s) 1993
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 2 cut(s) 848, 2756
BsnI GGCC 7 cut(s) 141, 156, 210, 243, 437, 672, 2016
Bso31I GGTCTC 2 cut(s) 1260, 2382
BsoBI CYCGRG 1 cut(s) 907
Bsp13I TCCGGA 1 cut(s) 2100
Bsp1407I TGTACA 2 cut(s) 2285, 3142
BspANI GGCC 7 cut(s) 141, 156, 210, 243, 437, 672, 2016
BspCNI CTCAG 7 cut(s) 285, 856, 864, 958, 979, 1021, 1744
BspEI TCCGGA 1 cut(s) 2100
BspFNI CGCG 4 cut(s) 27, 168, 198, 228
BspHI TCATGA 1 cut(s) 2062
BspLI GGNNCC 8 cut(s) 269, 270, 501, 544, 680, 732, 1509, 2301
BspMAI CTGCAG 1 cut(s) 583
BspOI GCTAGC 1 cut(s) 1853
BspPI GGATC 9 cut(s) 1502, 1515, 1742, 2167, 2294, 2307, 2436, 2530, 2806
BspTI CTTAAG 1 cut(s) 773
BspTNI GGTCTC 2 cut(s) 1260, 2382
BsrBI CCGCTC 4 cut(s) 68, 123, 284, 371
BsrDI GCAATG 3 cut(s) 825, 1860, 2076
BsrGI TGTACA 2 cut(s) 2285, 3142
BsrI ACTGG 5 cut(s) 1107, 1153, 1195, 2561, 2953
BssECI CCNNGG 9 cut(s) 133, 148, 166, 181, 211, 244, 673, 1741, 2640
BssHII GCGCGC 1 cut(s) 25
BssNI GRCGYC 2 cut(s) 659, 1282
BssT1I CCWWGG 1 cut(s) 1741
Bst2UI CCWGG 6 cut(s) 134, 674, 1477, 2028, 2641, 2796
Bst4CI ACNGT 6 cut(s) 694, 742, 1084, 1185, 1636, 1910
Bst6I CTCTTC 1 cut(s) 2734
BstACI GRCGYC 2 cut(s) 659, 1282
BstAFI CTTAAG 1 cut(s) 773
BstAUI TGTACA 2 cut(s) 2285, 3142
BstC8I GCNNGC 9 cut(s) 27, 178, 282, 611, 633, 1851, 2010, 2014, 2869
BstDEI CTNAG 8 cut(s) 293, 761, 864, 872, 945, 987, 1008, 1752
BstDSI CCRYGG 2 cut(s) 166, 181
BstEII GGTNACC 1 cut(s) 2975
BstENI CCTNNNNNAGG 1 cut(s) 1057
BstF5I GGATG 7 cut(s) 570, 1537, 1702, 1819, 2504, 2791, 3085
BstFNI CGCG 4 cut(s) 27, 168, 198, 228
BstH2I RGCGCY 3 cut(s) 177, 262, 1117
BstHHI GCGC 6 cut(s) 27, 29, 176, 261, 1116, 3030
BstMCI CGRYCG 1 cut(s) 244
BstNI CCWGG 6 cut(s) 134, 674, 1477, 2028, 2641, 2796
BstPI GGTNACC 1 cut(s) 2975
BstSCI CCNGG 7 cut(s) 132, 672, 1372, 1475, 2026, 2639, 2794
BstSFI CTRYAG 2 cut(s) 570, 579
BstUI CGCG 4 cut(s) 27, 168, 198, 228
BstV1I GCAGC 6 cut(s) 156, 1027, 2155, 2356, 2359, 2419
BstV2I GAAGAC 2 cut(s) 1416, 2867
BstX2I RGATCY 6 cut(s) 1288, 1507, 1747, 2299, 2441, 2605
BstYI RGATCY 6 cut(s) 1288, 1507, 1747, 2299, 2441, 2605
BstZI CGGCCG 1 cut(s) 241
BsuRI GGCC 7 cut(s) 141, 156, 210, 243, 437, 672, 2016
BtgI CCRYGG 2 cut(s) 166, 181
BtrI CACGTC 1 cut(s) 974
BtsCI GGATG 7 cut(s) 570, 1537, 1702, 1819, 2504, 2791, 3085
BtsI GCAGTG 1 cut(s) 2735
BtsIMutI CAGTG 3 cut(s) 660, 2470, 2735
Cac8I GCNNGC 9 cut(s) 27, 178, 282, 611, 633, 1851, 2010, 2014, 2869
CaiI CAGNNNCTG 1 cut(s) 578
CciI TCATGA 1 cut(s) 2062
CfoI GCGC 6 cut(s) 27, 29, 176, 261, 1116, 3030
Cfr13I GGNCC 2 cut(s) 155, 268
Cfr42I CCGCGG 1 cut(s) 169
CseI GACGC 2 cut(s) 234, 648
Csp6I GTAC 2 cut(s) 2286, 3143
CviQI GTAC 2 cut(s) 2286, 3143
DdeI CTNAG 8 cut(s) 293, 761, 864, 872, 945, 987, 1008, 1752
DraI TTTAAA 2 cut(s) 1944, 3051
EaeI YGGCCR 5 cut(s) 139, 241, 435, 670, 2014
EagI CGGCCG 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 2734
EarI CTCTTC 1 cut(s) 2734
EciI GGCGGA 1 cut(s) 219
EclXI CGGCCG 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 1741
Eco31I GGTCTC 2 cut(s) 1260, 2382
Eco32I GATATC 1 cut(s) 2788
Eco47I GGWCC 1 cut(s) 268
Eco47III AGCGCT 2 cut(s) 260, 1115
Eco52I CGGCCG 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 636, 1971
Eco88I CYCGRG 1 cut(s) 907
Eco91I GGTNACC 1 cut(s) 2975
EcoNI CCTNNNNNAGG 1 cut(s) 1057
EcoO109I RGGNCCY 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 2975
EcoRII CCWGG 6 cut(s) 132, 672, 1475, 2026, 2639, 2794
EcoRV GATATC 1 cut(s) 2788
EcoT14I CCWWGG 1 cut(s) 1741
EcoT22I ATGCAT 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 1741
Esp3I CGTCTC 1 cut(s) 1993
FalI AAGNNNNNCTT 4 cut(s) 744, 776, 1496, 1528
FaqI GGGAC 1 cut(s) 281
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 3 cut(s) 412, 1816, 2467
FblI GTMKAC 1 cut(s) 569
FokI GGATG 7 cut(s) 577, 1544, 1709, 1806, 2511, 2778, 3092
FspBI CTAG 6 cut(s) 446, 956, 1406, 1586, 1850, 2378
GlaI GCGC 6 cut(s) 26, 28, 175, 260, 1115, 3029
GsaI CCCAGC 5 cut(s) 720, 1696, 2709, 2814, 3074
GsuI CTGGAG 4 cut(s) 706, 1170, 2049, 2970
HaeII RGCGCY 3 cut(s) 177, 262, 1117
HaeIII GGCC 7 cut(s) 141, 156, 210, 243, 437, 672, 2016
HapII CCGG 2 cut(s) 1373, 2101
HgaI GACGC 2 cut(s) 234, 648
HhaI GCGC 6 cut(s) 27, 29, 176, 261, 1116, 3030
Hin1I GRCGYC 2 cut(s) 659, 1282
Hin6I GCGC 6 cut(s) 25, 27, 174, 259, 1114, 3028
HinP1I GCGC 6 cut(s) 25, 27, 174, 259, 1114, 3028
HincII GTYRAC 2 cut(s) 1188, 2632
HindII GTYRAC 2 cut(s) 1188, 2632
HindIII AAGCTT 5 cut(s) 633, 839, 1590, 2487, 3044
HpaI GTTAAC 1 cut(s) 1188
HpaII CCGG 2 cut(s) 1373, 2101
HphI GGTGA 4 cut(s) 923, 1088, 2465, 2550
Hpy166II GTNNAC 8 cut(s) 570, 1188, 1604, 2288, 2632, 2818, 3035, 3145
Hpy8I GTNNAC 8 cut(s) 570, 1188, 1604, 2288, 2632, 2818, 3035, 3145
Hpy99I CGWCG 1 cut(s) 1284
HpyAV CCTTC 8 cut(s) 472, 776, 790, 1280, 1476, 1498, 2489, 2990
HpyCH4III ACNGT 6 cut(s) 694, 742, 1084, 1185, 1636, 1910
HpyCH4IV ACGT 5 cut(s) 394, 973, 1282, 1382, 1413
HpyF3I CTNAG 8 cut(s) 293, 761, 864, 872, 945, 987, 1008, 1752
HpySE526I ACGT 5 cut(s) 394, 973, 1282, 1382, 1413
Hsp92I GRCGYC 2 cut(s) 659, 1282
HspAI GCGC 6 cut(s) 25, 27, 174, 259, 1114, 3028
KflI GGGWCCC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 2100
Ksp22I TGATCA 3 cut(s) 412, 1816, 2467
KspAI GTTAAC 1 cut(s) 1188
KspI CCGCGG 1 cut(s) 169
Lsp1109I GCAGC 6 cut(s) 156, 1027, 2155, 2356, 2359, 2419
LweI GCATC 9 cut(s) 316, 1522, 1927, 2056, 2307, 2419, 2497, 2955, 3002
MaeI CTAG 6 cut(s) 446, 956, 1406, 1586, 1850, 2378
MaeII ACGT 5 cut(s) 394, 973, 1282, 1382, 1413
MaeIII GTNAC 6 cut(s) 1559, 1710, 2036, 2085, 2563, 2975
MbiI CCGCTC 4 cut(s) 68, 123, 284, 371
MboII GAAGA 9 cut(s) 358, 971, 1265, 1421, 1538, 1760, 2751, 2872, 3070
MfeI CAATTG 1 cut(s) 2364
MflI RGATCY 6 cut(s) 1288, 1507, 1747, 2299, 2441, 2605
MlsI TGGCCA 1 cut(s) 672
MluCI AATT 9 cut(s) 397, 1257, 1471, 1722, 1842, 2094, 2364, 2694, 3023
MluNI TGGCCA 1 cut(s) 672
MlyI GAGTC 7 cut(s) 69, 597, 604, 788, 1457, 1490, 2879
MmeI TCCRAC 5 cut(s) 150, 1476, 2047, 2137, 2963
Mox20I TGGCCA 1 cut(s) 672
Mph1103I ATGCAT 1 cut(s) 466
MroI TCCGGA 1 cut(s) 2100
MroXI GAANNNNTTC 1 cut(s) 840
MscI TGGCCA 1 cut(s) 672
MslI CAYNNNNRTG 2 cut(s) 459, 2963
Msp20I TGGCCA 1 cut(s) 672
MspA1I CMGCKG 1 cut(s) 168
MspCI CTTAAG 1 cut(s) 773
MspI CCGG 2 cut(s) 1373, 2101
MspR9I CCNGG 7 cut(s) 134, 674, 1374, 1477, 2028, 2641, 2796
MunI CAATTG 1 cut(s) 2364
Mva1269I GAATGC 2 cut(s) 848, 2756
MvaI CCWGG 6 cut(s) 134, 674, 1477, 2028, 2641, 2796
MvnI CGCG 4 cut(s) 27, 168, 198, 228
NciI CCSGG 1 cut(s) 1374
NheI GCTAGC 1 cut(s) 1849
NlaIV GGNNCC 8 cut(s) 269, 270, 501, 544, 680, 732, 1509, 2301
NmeAIII GCCGAG 4 cut(s) 173, 236, 269, 334
NsiI ATGCAT 1 cut(s) 466
PagI TCATGA 1 cut(s) 2062
PauI GCGCGC 1 cut(s) 25
PctI GAATGC 2 cut(s) 848, 2756
PdmI GAANNNNTTC 1 cut(s) 840
PfeI GAWTC 9 cut(s) 559, 1069, 1096, 1106, 1737, 2059, 2192, 2456, 3016
PflMI CCANNNNNTGG 3 cut(s) 1207, 2309, 2677
PfoI TCCNGGA 2 cut(s) 1475, 2794
PleI GAGTC 7 cut(s) 69, 596, 603, 787, 1456, 1490, 2879
PpsI GAGTC 7 cut(s) 69, 596, 603, 787, 1456, 1490, 2879
PpuMI RGGWCCY 1 cut(s) 268
PshBI ATTAAT 1 cut(s) 1797
Psp1406I AACGTT 1 cut(s) 1382
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 6 cut(s) 132, 672, 1475, 2026, 2639, 2794
PspEI GGTNACC 1 cut(s) 2975
PspFI CCCAGC 5 cut(s) 716, 1692, 2705, 2810, 3070
PspGI CCWGG 6 cut(s) 132, 672, 1475, 2026, 2639, 2794
PspN4I GGNNCC 8 cut(s) 269, 270, 501, 544, 680, 732, 1509, 2301
PspPI GGNCC 2 cut(s) 155, 268
PspPPI RGGWCCY 1 cut(s) 268
PstI CTGCAG 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 6 cut(s) 1288, 1507, 1747, 2299, 2441, 2605
PteI GCGCGC 1 cut(s) 25
RsaI GTAC 2 cut(s) 2287, 3144
RsaNI GTAC 2 cut(s) 2286, 3143
RseI CAYNNNNRTG 2 cut(s) 459, 2963
SacII CCGCGG 1 cut(s) 169
Sau96I GGNCC 2 cut(s) 155, 268
SchI GAGTC 7 cut(s) 69, 597, 604, 788, 1457, 1490, 2879
ScrFI CCNGG 7 cut(s) 134, 674, 1374, 1477, 2028, 2641, 2796
SfaNI GCATC 9 cut(s) 316, 1522, 1927, 2056, 2307, 2419, 2497, 2955, 3002
SfcI CTRYAG 2 cut(s) 570, 579
Sfr303I CCGCGG 1 cut(s) 169
SgrBI CCGCGG 1 cut(s) 169
SinI GGWCC 1 cut(s) 268
SmiMI CAYNNNNRTG 2 cut(s) 459, 2963
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 9 cut(s) 397, 1257, 1471, 1722, 1842, 2094, 2364, 2694, 3023
SspI AATATT 1 cut(s) 1812
SspMI CTAG 6 cut(s) 446, 956, 1406, 1586, 1850, 2378
StyD4I CCNGG 7 cut(s) 132, 672, 1372, 1475, 2026, 2639, 2794
StyI CCWWGG 1 cut(s) 1741
TaaI ACNGT 6 cut(s) 694, 742, 1084, 1185, 1636, 1910
TaiI ACGT 5 cut(s) 397, 976, 1285, 1385, 1416
TaqI TCGA 6 cut(s) 1099, 1279, 2217, 2386, 2615, 2784
TasI AATT 9 cut(s) 397, 1257, 1471, 1722, 1842, 2094, 2364, 2694, 3023
TatI WGTACW 2 cut(s) 2285, 3142
TfiI GAWTC 9 cut(s) 559, 1069, 1096, 1106, 1737, 2059, 2192, 2456, 3016
TscAI CASTG 3 cut(s) 660, 2470, 2735
TseI GCWGC 6 cut(s) 144, 1040, 2143, 2369, 2372, 2432
TspRI CASTG 3 cut(s) 660, 2470, 2735
Van91I CCANNNNNTGG 3 cut(s) 1207, 2309, 2677
Vha464I CTTAAG 1 cut(s) 773
VpaK11BI GGWCC 1 cut(s) 268
VspI ATTAAT 1 cut(s) 1797
XagI CCTNNNNNAGG 1 cut(s) 1057
XapI RAATTY 2 cut(s) 1471, 2094
XbaI TCTAGA 3 cut(s) 955, 1405, 1585
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmiI GTMKAC 1 cut(s) 569
XmnI GAANNNNTTC 1 cut(s) 840
XspI CTAG 6 cut(s) 446, 956, 1406, 1586, 1850, 2378
ZraI GACGTC 1 cut(s) 1283
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.