Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003820

Physical Location & Seq

Genomic Coordinates Reverse (-)

171525 .. 172948

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGAGCTTGCTAGATAAAGCCAAGGACTTCGTGGCGGATAAACTCACCGCGATCCCTAAACCGGAGGGTTCAGTTACGGACGTTGACCTCAAAGACGTGAACCGTGACTCAGTTGAGTACTTGGCCAAAGTCTCTGTCACCAATCCTTACAGTCATTCGATTCCGATCTGTGAGATCAGTTTCACTTTCCACAGCGCCGGCAGGGAGATTGGAAAGGGGAAGATACCGGACCCGGGTTCTCTGAAAGCTAAGGACATGACGGCTCTTGATATTCCCGTGGTGGTGCCGTATAGTATACTGTTTAACCTGGCTCGAGACGTTGGTGTGGACTGGGACATTGACTACGAGCTCCAAATCGGTCTAACCATCGACCTTCCTGTTGTAGGGGAATTTACTATCCCTATCTCTAGTAAGGGAGAAATCAAACTTCCTACTTTTAAAGATTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

151

Amino Acids

16.54

Weight (kDa)

4.74

Isoelectric Point (pI)

10.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	44 - 140	1.8e-24	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01470 AT2G46140
fragaria_vesca	FvH4_4g03320 FvH4_7g15440 FvH4_7g15460
malus_domestica	MD01G1071800.v1.1 MD01G1071900.v1.1 MD07G1130800.v1.1 MD07G1130900.v1.1
prunus_persica	Prupe.2G178000_v2.0.a1 Prupe.2G178100_v2.0.a1 Prupe.2G178200_v2.0.a1
pyrus_communis	pycom01g10090 pycom01g10110 pycom07g12790 pycom07g12800
rosa_chinensis	RchiOBHm_Chr1g0357761 RchiOBHm_Chr1g0357771
rosa_laevigata	RLG00000027998 RLG00000027999
rosa_multiflora	Rmu_ssc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_4G00298530
rosa_rugosa	Rorug01G0258400 Rorug01G0258500
rosa_samantha	Rh1AG272300 Rh1AG272400 Rh1BG239500 Rh1BG239600 Rh1CG256200 Rh1CG256300 Rh1DG267800 Rh1DG267900
rosa_wichuraiana	Rw1G024300 Rw1G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	298
AccII	CGCG	1 cut(s)	53
AciI	CCGC	2 cut(s)	38, 51
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	392
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	64, 236, 386
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	9, 251, 352
AluI	AGCT	3 cut(s)	9, 251, 352
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	2 cut(s)	139, 312
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	2 cut(s)	235, 315
AoxI	GGCC	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	2 cut(s)	236, 237
AsuHPI	GGTGA	2 cut(s)	40, 133
AvaI	CYCGRG	2 cut(s)	235, 315
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	354
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	2 cut(s)	274, 279
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	2 cut(s)	236, 237
BcoDI	GTCTC	2 cut(s)	139, 312
BfaI	CTAG	2 cut(s)	14, 411
BfoI	RGCGCY	1 cut(s)	201
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	3 cut(s)	236, 237, 311
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	2 cut(s)	235, 315
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	234, 288
BmrFI	CCNGG	3 cut(s)	236, 237, 311
BmrI	ACTGGG	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	343
Bpu10I	CCTNAGC	1 cut(s)	252
BpuMI	CCSGG	2 cut(s)	236, 237
BsaBI	GATNNNNATC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	24, 235, 279
BsaWI	WCCGGW	2 cut(s)	64, 229
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 236, 386
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	3 cut(s)	24, 235, 279
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	3 cut(s)	64, 236, 386
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	2 cut(s)	235, 315
BsiSI	CCGG	4 cut(s)	65, 201, 230, 236
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	3 cut(s)	64, 236, 386
BsmAI	GTCTC	2 cut(s)	139, 312
BsmBI	CGTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	128
BsoBI	CYCGRG	2 cut(s)	235, 315
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	54, 168, 177
BspACI	CCGC	2 cut(s)	38, 51
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	234, 288
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	24, 235, 279
BssMI	GATC	3 cut(s)	54, 168, 177
BssNAI	GTATAC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	3 cut(s)	107, 155, 303
BstC8I	GCNNGC	3 cut(s)	7, 11, 202
BstDEI	CTNAG	2 cut(s)	112, 252
BstDSI	CCRYGG	1 cut(s)	279
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	57, 171, 180
BstMAI	GTCTC	2 cut(s)	139, 312
BstMBI	GATC	3 cut(s)	54, 168, 177
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	3 cut(s)	234, 235, 309
BstUI	CGCG	1 cut(s)	53
BstZ17I	GTATAC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	279
BtrI	CACGTC	1 cut(s)	100
Cac8I	GCNNGC	3 cut(s)	7, 11, 202
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	232
Cfr9I	CCCGGG	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	7 cut(s)	9, 23, 128, 251, 266, 314, 352
CviKI_1	RGCY	7 cut(s)	9, 23, 128, 251, 266, 314, 352
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	112, 252
DpnI	GATC	3 cut(s)	56, 170, 179
DpnII	GATC	3 cut(s)	54, 168, 177
DraI	TTTAAA	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	352
Eco88I	CYCGRG	2 cut(s)	235, 315
EcoICRI	GAGCTC	1 cut(s)	352
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	1 cut(s)	262
FaiI	YATR	3 cut(s)	260, 294, 299
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	298
FriOI	GRGCYC	1 cut(s)	354
FspBI	CTAG	2 cut(s)	14, 411
GlaI	GCGC	1 cut(s)	199
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	4 cut(s)	65, 201, 230, 236
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	110, 163
HpaII	CCGG	4 cut(s)	65, 201, 230, 236
HphI	GGTGA	2 cut(s)	40, 133
Hpy166II	GTNNAC	4 cut(s)	88, 103, 299, 331
Hpy188I	TCNGA	3 cut(s)	168, 246, 455
Hpy188III	TCNNGA	2 cut(s)	269, 317
Hpy8I	GTNNAC	4 cut(s)	88, 103, 299, 331
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	3 cut(s)	107, 155, 303
HpyCH4IV	ACGT	3 cut(s)	84, 99, 321
HpyF3I	CTNAG	2 cut(s)	112, 252
HpySE526I	ACGT	3 cut(s)	84, 99, 321
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	198
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	54, 168, 177
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	9 cut(s)	78, 190, 214, 243, 249, 296, 319, 323, 393
MaeI	CTAG	2 cut(s)	14, 411
MaeII	ACGT	3 cut(s)	84, 99, 321
MaeIII	GTNAC	3 cut(s)	76, 107, 139
MalI	GATC	3 cut(s)	56, 170, 179
MboI	GATC	3 cut(s)	54, 168, 177
MboII	GAAGA	2 cut(s)	235, 442
MhlI	GDGCHC	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	1 cut(s)	392
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	2 cut(s)	61, 101
Mox20I	TGGCCA	1 cut(s)	128
MroNI	GCCGGC	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	2 cut(s)	306, 441
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	4 cut(s)	65, 201, 230, 236
MspR9I	CCNGG	3 cut(s)	236, 237, 311
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	202
NciI	CCSGG	2 cut(s)	236, 237
NdeII	GATC	3 cut(s)	54, 168, 177
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	2 cut(s)	234, 288
NmuCI	GTSAC	2 cut(s)	107, 139
PaeR7I	CTCGAG	1 cut(s)	315
PdiI	GCCGGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	234, 288
PspPI	GGNCC	1 cut(s)	232
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	306, 441
Sau3AI	GATC	3 cut(s)	54, 168, 177
Sau96I	GGNCC	1 cut(s)	232
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	3 cut(s)	236, 237, 311
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	9 cut(s)	11, 87, 93, 102, 253, 312, 324, 354, 378
Sfr274I	CTCGAG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	315
SmaI	CCCGGG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	1 cut(s)	392
SsiI	CCGC	2 cut(s)	38, 51
SspMI	CTAG	2 cut(s)	14, 411
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	234, 235, 309
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	3 cut(s)	107, 155, 303
TaiI	ACGT	3 cut(s)	87, 102, 324
TaqI	TCGA	3 cut(s)	161, 316, 372
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	1 cut(s)	392
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	306, 441
Tru9I	TTAA	2 cut(s)	306, 441
TseFI	GTSAC	2 cut(s)	107, 139
Tsp45I	GTSAC	2 cut(s)	107, 139
TspGWI	ACGGA	1 cut(s)	95
TspMI	CCCGGG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	232
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XhoI	CTCGAG	1 cut(s)	315
XmaI	CCCGGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	298
XspI	CTAG	2 cut(s)	14, 411
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.