Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000399.1

Orthogroup ID

OG0003820

Physical Location & Seq

Genomic Coordinates Reverse (-)

64404 .. 66655

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000399.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgttgaagtcgacggagaatgtggagaaggaggttaataaggaggaggacaaaacagagaggtcgctgatgaaaatggctaagacgacggaggaggttaaggaggagggggatgaggctaagagggacaggtctttgatgggaatgtttaaatcgaaggaggaggcgaaggagaggtcgctgatgaaaatggctaagacgacggaggaggcagcggaggaggttaaggaggagggggatgaggctaagagggacaggtctttgatgggaatgtttaaatcgaaggaggaggcgaagaaggaggttgaggaggaggcgaaggaggctaagacggagcagtcgttgatagacaaggcgaagaactatgtggcagagaagatagcaaatgtgccaacgccagaggcaagtctggtcgatgttgatttcaagaaggtgagctttgattctgccgattaccttgccaaggttaacatcaaaaatccctattcacattccatccccatctgtgagatcgattacaccctcaaaagcactggcagtgtgatcgcttccgggaaaattccagaccctggatcgataaaggctagcggtgatactcaggtggatgtaccagtgaaagtgccacacagtataatagtgactttggttaaggacatcgctacagattgggacattgactatgagttggaactgggtctcatcattgaccttcctgtaattgggaacattaccataccactatccaggaaaggtgagatcaagcttcccaccttaaaggagttagtatttggagcaaaggaggaggagaaggattcaaaagaaaaagacatggattcaaaagaaaaagagaaggattcaaaagaaaaagataaggattcagataaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

295

Amino Acids

33.11

Weight (kDa)

4.95

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01470 AT2G46140
fragaria_vesca	FvH4_4g03320 FvH4_7g15440 FvH4_7g15460
malus_domestica	MD01G1071800.v1.1 MD01G1071900.v1.1 MD07G1130800.v1.1 MD07G1130900.v1.1
prunus_persica	Prupe.2G178000_v2.0.a1 Prupe.2G178100_v2.0.a1 Prupe.2G178200_v2.0.a1
pyrus_communis	pycom01g10090 pycom01g10110 pycom07g12790 pycom07g12800
rosa_chinensis	RchiOBHm_Chr1g0357761 RchiOBHm_Chr1g0357771
rosa_laevigata	RLG00000027998 RLG00000027999
rosa_multiflora	Rmu_ssc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_4G00298530
rosa_rugosa	Rorug01G0258400 Rorug01G0258500
rosa_samantha	Rh1AG272300 Rh1AG272400 Rh1BG239500 Rh1BG239600 Rh1CG256200 Rh1CG256300 Rh1DG267800 Rh1DG267900
rosa_wichuraiana	Rw1G024300 Rw1G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	2 cut(s)	215, 588
AclWI	GGATC	1 cut(s)	580
AcsI	RAATTY	1 cut(s)	558
AfaI	GTAC	1 cut(s)	609
AfiI	CCNNNNNNNGG	3 cut(s)	463, 569, 719
AgsI	TTSAA	5 cut(s)	7, 427, 816, 837, 858
AjnI	CCWGG	2 cut(s)	568, 743
AluBI	AGCT	2 cut(s)	438, 763
AluI	AGCT	2 cut(s)	438, 763
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	1 cut(s)	580
AlwNI	CAGNNNCTG	1 cut(s)	569
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	558
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	3 cut(s)	445, 602, 764
AsuNHI	GCTAGC	1 cut(s)	584
BaeI	ACNNNNGTAYC	2 cut(s)	585, 618
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	4 cut(s)	133, 259, 503, 509
BcgI	CGANNNNNNTGC	4 cut(s)	440, 474, 526, 560
BciT130I	CCWGG	2 cut(s)	570, 745
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	660
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	3 cut(s)	553, 570, 745
BmrFI	CCNGG	3 cut(s)	553, 570, 745
BmrI	ACTGGG	1 cut(s)	701
BmtI	GCTAGC	1 cut(s)	588
BmuI	ACTGGG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	553
Bsa29I	ATCGAT	2 cut(s)	513, 575
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	2 cut(s)	462, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	3 cut(s)	463, 569, 719
Bse1I	ACTGG	3 cut(s)	538, 611, 696
BseBI	CCWGG	2 cut(s)	570, 745
BseCI	ATCGAT	2 cut(s)	513, 575
BseDI	CCNNGG	2 cut(s)	462, 568
BseGI	GGATG	4 cut(s)	118, 244, 495, 610
BseLI	CCNNNNNNNGG	3 cut(s)	463, 569, 719
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	3 cut(s)	538, 611, 696
BseXI	GCAGC	1 cut(s)	224
BshVI	ATCGAT	2 cut(s)	513, 575
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	3 cut(s)	140, 266, 683
BslI	CCNNNNNNNGG	3 cut(s)	463, 569, 719
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	3 cut(s)	140, 266, 683
Bso31I	GGTCTC	1 cut(s)	701
Bsp143I	GATC	4 cut(s)	510, 543, 572, 756
BspACI	CCGC	2 cut(s)	215, 588
BspCNI	CTCAG	1 cut(s)	610
BspDI	ATCGAT	2 cut(s)	513, 575
BspOI	GCTAGC	1 cut(s)	588
BspPI	GGATC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	701
BsrI	ACTGG	3 cut(s)	538, 611, 696
BssECI	CCNNGG	2 cut(s)	462, 568
BssMI	GATC	4 cut(s)	510, 543, 572, 756
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	2 cut(s)	570, 745
Bst4CI	ACNGT	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	6 cut(s)	81, 120, 195, 246, 327, 597
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	4 cut(s)	118, 244, 495, 610
BstKTI	GATC	4 cut(s)	513, 546, 575, 759
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	4 cut(s)	510, 543, 572, 756
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	570, 745
BstSCI	CCNGG	3 cut(s)	551, 568, 743
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	1 cut(s)	224
Bsu15I	ATCGAT	2 cut(s)	513, 575
BsuTUI	ATCGAT	2 cut(s)	513, 575
BtgZI	GCGATG	1 cut(s)	640
BtsCI	GGATG	4 cut(s)	118, 244, 495, 610
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	3 cut(s)	531, 544, 618
Cac8I	GCNNGC	1 cut(s)	586
CaiI	CAGNNNCTG	1 cut(s)	569
ClaI	ATCGAT	2 cut(s)	513, 575
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	1 cut(s)	829
CviJI	RGCY	8 cut(s)	80, 119, 194, 245, 326, 438, 584, 763
CviKI_1	RGCY	8 cut(s)	80, 119, 194, 245, 326, 438, 584, 763
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	6 cut(s)	81, 120, 195, 246, 327, 597
DpnI	GATC	4 cut(s)	512, 545, 574, 758
DpnII	GATC	4 cut(s)	510, 543, 572, 756
DraI	TTTAAA	2 cut(s)	151, 277
DrdI	GACNNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	462
Eco31I	GGTCTC	1 cut(s)	701
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	568, 743
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	1 cut(s)	832
FaiI	YATR	5 cut(s)	366, 632, 681, 734, 830
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	3 cut(s)	140, 266, 683
FatI	CATG	1 cut(s)	828
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	4 cut(s)	125, 251, 482, 617
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	1 cut(s)	213
HapII	CCGG	1 cut(s)	552
Hin1II	CATG	1 cut(s)	832
HincII	GTYRAC	2 cut(s)	12, 469
HindII	GTYRAC	2 cut(s)	12, 469
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	5 cut(s)	443, 812, 833, 854, 875
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	3 cut(s)	445, 602, 764
Hpy166II	GTNNAC	2 cut(s)	12, 469
Hpy188I	TCNGA	1 cut(s)	880
Hpy188III	TCNNGA	2 cut(s)	427, 563
Hpy8I	GTNNAC	2 cut(s)	12, 469
Hpy99I	CGWCG	3 cut(s)	16, 91, 205
HpyCH4III	ACNGT	1 cut(s)	629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	6 cut(s)	81, 120, 195, 246, 327, 597
Hsp92II	CATG	1 cut(s)	832
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	510, 543, 572, 756
LmnI	GCTCC	2 cut(s)	334, 791
Lsp1109I	GCAGC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	4 cut(s)	512, 545, 574, 758
MboI	GATC	4 cut(s)	510, 543, 572, 756
MboII	GAAGA	3 cut(s)	307, 370, 388
MluCI	AATT	2 cut(s)	558, 717
MmeI	TCCRAC	1 cut(s)	666
MseI	TTAA	8 cut(s)	36, 99, 150, 225, 276, 468, 648, 773
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	3 cut(s)	553, 570, 745
MvaI	CCWGG	2 cut(s)	570, 745
MwoI	GCNNNNNNNGC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	553
NdeII	GATC	4 cut(s)	510, 543, 572, 756
NheI	GCTAGC	1 cut(s)	584
NlaIII	CATG	1 cut(s)	832
NmuCI	GTSAC	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PfeI	GAWTC	5 cut(s)	443, 812, 833, 854, 875
PflMI	CCANNNNNTGG	1 cut(s)	569
PfoI	TCCNGGA	2 cut(s)	551, 743
PkrI	GCNGC	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	568, 743
PspGI	CCWGG	2 cut(s)	568, 743
PstNI	CAGNNNCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	8 cut(s)	36, 99, 150, 225, 276, 468, 648, 773
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	4 cut(s)	510, 543, 572, 756
ScrFI	CCNGG	3 cut(s)	553, 570, 745
SfcI	CTRYAG	1 cut(s)	660
Sse9I	AATT	2 cut(s)	558, 717
SsiI	CCGC	2 cut(s)	215, 588
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	3 cut(s)	551, 568, 743
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	629
TaqI	TCGA	6 cut(s)	11, 155, 281, 414, 513, 575
TasI	AATT	2 cut(s)	558, 717
TfiI	GAWTC	5 cut(s)	443, 812, 833, 854, 875
Tru1I	TTAA	8 cut(s)	36, 99, 150, 225, 276, 468, 648, 773
Tru9I	TTAA	8 cut(s)	36, 99, 150, 225, 276, 468, 648, 773
TscAI	CASTG	3 cut(s)	538, 544, 618
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	2 cut(s)	86, 200
TspGWI	ACGGA	4 cut(s)	29, 104, 218, 347
TspRI	CASTG	3 cut(s)	538, 544, 618
Van91I	CCANNNNNTGG	1 cut(s)	569
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	558
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.