FvH4_4g03320

Desiccation protectant protein Lea14 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
2950507 .. 2952215
1709 bp
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UTR
Exon/CDS
Intron
FvH4_4g03320.t1

Sequence Viewer

Length: 489 bp
ATGGAGCAAGAAGAGGATTACAAAAGTAGAACAGCTGAGAAATTGAGAAAGACAAGAGGAGGCCGGGAAGAAGGAGATTATGGTGGATTGGTTAAGGCGGAGGGGAAGAGGGATAGGTCATTGTTGGACGTGTTTAAGTCGAAGGAAGAGGTTGAGAAGGAGGCAAAGGAGACTAAGACAGAGGAGTTGTTAGATGAGGCAAGTCTGAACCACAAGAGAGAATGTGATTGTGGATTTGTGGTGGACGAGGCTGGAGAGGTTGGCGGCGGCGATGAGGAGGTTGTCAAAGTGGGTGAGACAGGTGGAATGGGCGCGATGAATGAGTGGGGGGCGGTGGGGAGAAGCCAGAAGGTGAGAGAGTTTATGGAGGAGACAAGATTGGGCATTTGCTTGGTTTTGAAGGAGGATTGGAGGAATGGTAATTCGATTGAATGGATGGGTGTGGGGCTTGGGTTTTTTAGAGTTCTTACTCAGTCAAAACGGGTTTGA

Protein Analysis

163

Amino Acids

18.2

Weight (kDa)

4.98

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 314
AciI CCGC 4 cut(s) 98, 264, 267, 332
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 2 cut(s) 400, 431
AjiI CACGTC 1 cut(s) 130
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw26I GTCTC 3 cut(s) 164, 290, 365
AoxI GGCC 1 cut(s) 61
AspLEI GCGC 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 305, 364
BccI CCATC 1 cut(s) 430
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 164, 290, 365
BisI GCNGC 2 cut(s) 265, 268
BlsI GCNGC 2 cut(s) 266, 269
Bme1390I CCNGG 1 cut(s) 65
BmgBI CACGTC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
BseGI GGATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 27, 485
BseRI GAGGAG 4 cut(s) 72, 197, 290, 383
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 64
BsmAI GTCTC 3 cut(s) 164, 290, 365
BsnI GGCC 1 cut(s) 63
BspACI CCGC 4 cut(s) 98, 264, 267, 332
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 2 cut(s) 28, 484
BspFNI CGCG 1 cut(s) 314
Bst6I CTCTTC 3 cut(s) 6, 101, 141
BstDEI CTNAG 3 cut(s) 36, 174, 471
BstF5I GGATG 1 cut(s) 441
BstFNI CGCG 1 cut(s) 314
BstHHI GCGC 1 cut(s) 314
BstMAI GTCTC 3 cut(s) 164, 290, 365
BstSCI CCNGG 1 cut(s) 63
BstUI CGCG 1 cut(s) 314
BsuRI GGCC 1 cut(s) 63
BtgZI GCGATG 2 cut(s) 285, 329
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 441
CfoI GCGC 1 cut(s) 314
CviJI RGCY 5 cut(s) 35, 63, 251, 345, 448
CviKI_1 RGCY 5 cut(s) 35, 63, 251, 345, 448
DdeI CTNAG 3 cut(s) 36, 174, 471
Eam1104I CTCTTC 3 cut(s) 6, 101, 141
EarI CTCTTC 3 cut(s) 6, 101, 141
EciI GGCGGA 1 cut(s) 113
FaiI YATR 2 cut(s) 81, 365
Fnu4HI GCNGC 2 cut(s) 265, 268
FokI GGATG 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 265, 268
GlaI GCGC 1 cut(s) 313
GluI GCNGC 2 cut(s) 265, 268
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 64
HhaI GCGC 1 cut(s) 314
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HpaII CCGG 1 cut(s) 64
HphI GGTGA 2 cut(s) 305, 364
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 5 cut(s) 65, 136, 151, 343, 394
HpyCH4IV ACGT 1 cut(s) 129
HpyF3I CTNAG 3 cut(s) 36, 174, 471
HpySE526I ACGT 1 cut(s) 129
HspAI GCGC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 77, 237, 285, 359
MaeII ACGT 1 cut(s) 129
MboII GAAGA 4 cut(s) 23, 80, 118, 158
MluCI AATT 2 cut(s) 41, 421
MmeI TCCRAC 1 cut(s) 105
MseI TTAA 2 cut(s) 93, 135
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 314
NciI CCSGG 1 cut(s) 65
PkrI GCNGC 2 cut(s) 266, 269
PvuII CAGCTG 1 cut(s) 35
SaqAI TTAA 2 cut(s) 93, 135
SatI GCNGC 2 cut(s) 265, 268
ScrFI CCNGG 1 cut(s) 65
SetI ASST 8 cut(s) 37, 119, 132, 153, 261, 282, 304, 354
Sse9I AATT 2 cut(s) 41, 421
SsiI CCGC 4 cut(s) 98, 264, 267, 332
StyD4I CCNGG 1 cut(s) 63
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 140, 425
TasI AATT 2 cut(s) 41, 421
TauI GCSGC 2 cut(s) 267, 270
Tru1I TTAA 2 cut(s) 93, 135
Tru9I TTAA 2 cut(s) 93, 135
TspDTI ATGAA 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.