Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003820

Physical Location & Seq

Genomic Coordinates Reverse (-)

36787530 .. 36795240

Gene Structure 7711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0258500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGTCAGGGAGAACAAGGACTATGTTCACTCCTTGGAGTCTCTCGCCAATTAACTAGTATCTTGGGAATTATAACTGCTGTCAATGAACATATAATCGACACAGCTCCTCCTCGATTACATGTTGGCCATGCTGAGCATAATTCTTTTCCTTATCCATTGTGTATATCTGCACTAAAGGACTTGGAAACGTTGGTTGAAGTTGTGGCCCAACAGTACTTTGGTGACGAGAAAAAATGGAATTACATTTCTATTATGGAGGCTAGCAAGGTGCTAGTTAGGTTAGCTTTGTTCCGGAACAGTGGATATAAGATGCTTCTCCATGGAGGAGAGACACCAAATGATGAAAAAAATTTGGATGCCTCAACTCCTCAGCGTAGAAGTGGTGGTTTTATGAAGCCTGGCGAGCAGCATGGGAATGGTCACTTGAGAAATAATCATGCACAGGATCCATGGAATTTAGAAGGAAGAGCACTATCTGCATTGAATAGGTTTGGAGAAAAGGCTAGGACTGTTTCAGATCCAGTATGGTTGCGTCGGGTTCAACACCAGCATGCCATTATGGAGCCTCCAACTCCAATGGTTGAGAGGTCGACTCTATCCTCCATATTGTCCGAAAAGGGTCTCCATGGGGCTTTGTATGTGGCTGGGGAAGTGCTATTTATAACAAGACCACTTATTTATGTTTTATTTATTCGGAAATATGGAGCTCGCTCCTGGATTCCTTGGTTTCTTTCGCTGGCTGTGGACTTCACTGGAATGGGCATTCTATCTCGAATTACTTCGTCCACAGGTGGTACAAAAGAGCAGCAGTTTCATCTTTCTGTCCCTGAAAAGAATGAGGTTAAAAGACGAAAACTGTTATGGGCACTTTACCTCATGAGAGATCCATTTTTCAGCAAGTATACCAGGCGAAGACTTGAAGGCACCGAGAATATGTTGGAACATATACCAGTTGTTGGATTTCTTGCAGCAAAACTTGTTGAGCTTATTTTGGGAGCACAGACAAGGTATACTTACATGTCGGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

344

Amino Acids

38.76

Weight (kDa)

9.41

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex16	PF08610	15 - 335	7.4e-72	Peroxisomal membrane protein (Pex16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01470 AT2G46140
fragaria_vesca	FvH4_4g03320 FvH4_7g15440 FvH4_7g15460
malus_domestica	MD01G1071800.v1.1 MD01G1071900.v1.1 MD07G1130800.v1.1 MD07G1130900.v1.1
prunus_persica	Prupe.2G178000_v2.0.a1 Prupe.2G178100_v2.0.a1 Prupe.2G178200_v2.0.a1
pyrus_communis	pycom01g10090 pycom01g10110 pycom07g12790 pycom07g12800
rosa_chinensis	RchiOBHm_Chr1g0357761 RchiOBHm_Chr1g0357771
rosa_laevigata	RLG00000027998 RLG00000027999
rosa_multiflora	Rmu_ssc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_4G00298530
rosa_rugosa	Rorug01G0258400 Rorug01G0258500
rosa_samantha	Rh1AG272300 Rh1AG272400 Rh1BG239500 Rh1BG239600 Rh1CG256200 Rh1CG256300 Rh1DG267800 Rh1DG267900
rosa_wichuraiana	Rw1G024300 Rw1G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	74, 665
AccB1I	GGYRCC	1 cut(s)	926
AccB7I	CCANNNNNTGG	1 cut(s)	959
AccI	GTMKAC	3 cut(s)	593, 905, 1013
AccIII	TCCGGA	1 cut(s)	294
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	4 cut(s)	443, 456, 515, 881
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	352, 457
AfaI	GTAC	2 cut(s)	218, 799
AfiI	CCNNNNNNNGG	1 cut(s)	959
AflIII	ACRYGT	2 cut(s)	121, 1020
AgsI	TTSAA	4 cut(s)	200, 487, 545, 923
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	3 cut(s)	400, 716, 908
AluBI	AGCT	4 cut(s)	107, 287, 710, 988
AluI	AGCT	4 cut(s)	107, 287, 710, 988
Alw21I	GWGCWC	3 cut(s)	475, 712, 1003
Alw26I	GTCTC	3 cut(s)	46, 326, 629
AlwI	GGATC	4 cut(s)	443, 456, 515, 881
Aor13HI	TCCGGA	1 cut(s)	294
AoxI	GGCC	2 cut(s)	127, 207
ApeKI	GCWGC	3 cut(s)	409, 808, 971
ApoI	RAATTY	2 cut(s)	352, 457
Asp700I	GAANNNNTTC	1 cut(s)	781
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	236
AsuNHI	GCTAGC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	871
BalI	TGGCCA	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	926
BanII	GRGCYC	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	922
Bbv12I	GWGCWC	3 cut(s)	475, 712, 1003
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	421, 820, 983
BciT130I	CCWGG	3 cut(s)	402, 718, 910
BcoDI	GTCTC	3 cut(s)	46, 326, 629
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	4 cut(s)	57, 264, 275, 507
BisI	GCNGC	3 cut(s)	410, 809, 972
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	3 cut(s)	411, 810, 973
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	3 cut(s)	402, 718, 910
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	3 cut(s)	450, 567, 928
BmrFI	CCNGG	3 cut(s)	402, 718, 910
BmsI	GCATC	2 cut(s)	303, 349
BmtI	GCTAGC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	922
BplI	GAGNNNNNCTC	2 cut(s)	580, 612
Bpu10I	CCTNAGC	1 cut(s)	372
Bpu1102I	GCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	5 cut(s)	34, 322, 452, 628, 725
BsaWI	WCCGGW	1 cut(s)	294
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	959
Bse1I	ACTGG	3 cut(s)	524, 760, 953
BseAI	TCCGGA	1 cut(s)	294
BseBI	CCWGG	3 cut(s)	402, 718, 910
BseDI	CCNNGG	5 cut(s)	34, 322, 452, 628, 725
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	959
BseMII	CTCAG	2 cut(s)	126, 386
BseNI	ACTGG	3 cut(s)	524, 760, 953
BseRI	GAGGAG	4 cut(s)	99, 102, 342, 360
BseSI	GKGCMC	1 cut(s)	871
BseXI	GCAGC	3 cut(s)	421, 820, 983
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	129, 209
BshNI	GGYRCC	1 cut(s)	926
BsiHKAI	GWGCWC	3 cut(s)	475, 712, 1003
BsiSI	CCGG	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	812
BslI	CCNNNNNNNGG	1 cut(s)	959
BsmAI	GTCTC	3 cut(s)	46, 326, 629
BsmFI	GGGAC	1 cut(s)	812
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	2 cut(s)	129, 209
Bso31I	GGTCTC	1 cut(s)	629
Bsp1286I	GDGCHC	4 cut(s)	475, 712, 871, 1003
Bsp13I	TCCGGA	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	448, 520, 886, 1028
Bsp1720I	GCTNAGC	1 cut(s)	135
Bsp19I	CCATGG	3 cut(s)	322, 452, 628
BspANI	GGCC	2 cut(s)	129, 209
BspCNI	CTCAG	2 cut(s)	127, 385
BspEI	TCCGGA	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	879
BspLI	GGNNCC	3 cut(s)	450, 567, 928
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	4 cut(s)	443, 456, 515, 881
BspQI	GCTCTTC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	926
BspTNI	GGTCTC	1 cut(s)	629
BsrI	ACTGG	3 cut(s)	524, 760, 953
BssECI	CCNNGG	5 cut(s)	34, 322, 452, 628, 725
BssMI	GATC	4 cut(s)	448, 520, 886, 1028
BssNAI	GTATAC	2 cut(s)	906, 1014
BssT1I	CCWWGG	5 cut(s)	34, 322, 452, 628, 725
Bst1107I	GTATAC	2 cut(s)	906, 1014
Bst2UI	CCWGG	3 cut(s)	402, 718, 910
Bst4CI	ACNGT	4 cut(s)	216, 302, 514, 861
Bst6I	CTCTTC	1 cut(s)	463
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	5 cut(s)	265, 407, 555, 712, 741
BstDEI	CTNAG	2 cut(s)	135, 372
BstDSI	CCRYGG	3 cut(s)	322, 452, 628
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	4 cut(s)	451, 523, 889, 1031
BstMAI	GTCTC	3 cut(s)	46, 326, 629
BstMBI	GATC	4 cut(s)	448, 520, 886, 1028
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 479
BstNI	CCWGG	3 cut(s)	402, 718, 910
BstNSI	RCATGY	3 cut(s)	125, 557, 1024
BstSCI	CCNGG	3 cut(s)	400, 716, 908
BstSLI	GKGCMC	1 cut(s)	871
BstV1I	GCAGC	3 cut(s)	421, 820, 983
BstV2I	GAAGAC	1 cut(s)	922
BstX2I	RGATCY	3 cut(s)	448, 520, 886
BstYI	RGATCY	3 cut(s)	448, 520, 886
BstZ17I	GTATAC	2 cut(s)	906, 1014
BsuRI	GGCC	2 cut(s)	129, 209
BtgI	CCRYGG	3 cut(s)	322, 452, 628
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	307, 753
Cac8I	GCNNGC	5 cut(s)	265, 407, 555, 712, 741
CciI	TCATGA	1 cut(s)	879
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	2 cut(s)	217, 798
CviQI	GTAC	2 cut(s)	217, 798
DdeI	CTNAG	2 cut(s)	135, 372
DpnI	GATC	4 cut(s)	450, 522, 888, 1030
DpnII	GATC	4 cut(s)	448, 520, 886, 1028
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	710
Eco130I	CCWWGG	5 cut(s)	34, 322, 452, 628, 725
Eco24I	GRGCYC	1 cut(s)	712
Eco31I	GGTCTC	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	710
EcoICRI	GAGCTC	1 cut(s)	710
EcoRII	CCWGG	3 cut(s)	400, 716, 908
EcoT14I	CCWWGG	5 cut(s)	34, 322, 452, 628, 725
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	5 cut(s)	34, 322, 452, 628, 725
FalI	AAGNNNNNCTT	2 cut(s)	1000, 1032
FaqI	GGGAC	1 cut(s)	812
FblI	GTMKAC	3 cut(s)	593, 905, 1013
Fnu4HI	GCNGC	3 cut(s)	410, 809, 972
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	3 cut(s)	410, 809, 972
FspBI	CTAG	4 cut(s)	57, 264, 275, 507
GluI	GCNGC	3 cut(s)	410, 809, 972
GsaI	CCCAGC	1 cut(s)	651
HaeIII	GGCC	2 cut(s)	129, 209
HapII	CCGG	1 cut(s)	295
HgaI	GACGC	1 cut(s)	524
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HinfI	GANTC	3 cut(s)	39, 595, 721
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	6 cut(s)	29, 594, 748, 789, 906, 1014
Hpy188I	TCNGA	3 cut(s)	520, 616, 699
Hpy188III	TCNNGA	4 cut(s)	295, 774, 880, 1026
Hpy8I	GTNNAC	6 cut(s)	29, 594, 748, 789, 906, 1014
Hpy99I	CGWCG	1 cut(s)	540
HpyAV	CCTTC	2 cut(s)	458, 917
HpyCH4III	ACNGT	4 cut(s)	216, 302, 514, 861
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	173, 443, 482, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 479
HpyF3I	CTNAG	2 cut(s)	135, 372
HpySE526I	ACGT	1 cut(s)	191
Kpn2I	TCCGGA	1 cut(s)	294
Kzo9I	GATC	4 cut(s)	448, 520, 886, 1028
LguI	GCTCTTC	1 cut(s)	463
LmnI	GCTCC	5 cut(s)	112, 565, 707, 719, 998
Lsp1109I	GCAGC	3 cut(s)	421, 820, 983
LweI	GCATC	2 cut(s)	303, 349
MaeI	CTAG	4 cut(s)	57, 264, 275, 507
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	224, 422
MalI	GATC	4 cut(s)	450, 522, 888, 1030
MboI	GATC	4 cut(s)	448, 520, 886, 1028
MboII	GAAGA	2 cut(s)	480, 927
MflI	RGATCY	3 cut(s)	448, 520, 886
MhlI	GDGCHC	4 cut(s)	475, 712, 871, 1003
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	7 cut(s)	50, 69, 142, 241, 352, 457, 777
MluNI	TGGCCA	1 cut(s)	129
MlyI	GAGTC	2 cut(s)	48, 589
MmeI	TCCRAC	3 cut(s)	596, 921, 940
Mox20I	TGGCCA	1 cut(s)	129
MroI	TCCGGA	1 cut(s)	294
MroXI	GAANNNNTTC	1 cut(s)	781
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	2 cut(s)	53, 846
MslI	CAYNNNNRTG	3 cut(s)	417, 552, 758
Msp20I	TGGCCA	1 cut(s)	129
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	3 cut(s)	402, 718, 910
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	3 cut(s)	402, 718, 910
MwoI	GCNNNNNNNGC	2 cut(s)	406, 479
NcoI	CCATGG	3 cut(s)	322, 452, 628
NdeII	GATC	4 cut(s)	448, 520, 886, 1028
NheI	GCTAGC	1 cut(s)	263
NlaIV	GGNNCC	3 cut(s)	450, 567, 928
NmuCI	GTSAC	2 cut(s)	224, 422
NspI	RCATGY	3 cut(s)	125, 557, 1024
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	879
PciI	ACATGT	2 cut(s)	121, 1020
PciSI	GCTCTTC	1 cut(s)	463
PctI	GAATGC	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	781
PfeI	GAWTC	1 cut(s)	721
PflMI	CCANNNNNTGG	1 cut(s)	959
PfoI	TCCNGGA	1 cut(s)	716
PkrI	GCNGC	3 cut(s)	411, 810, 973
PleI	GAGTC	2 cut(s)	47, 589
PpsI	GAGTC	2 cut(s)	47, 589
PscI	ACATGT	2 cut(s)	121, 1020
PsiI	TTATAA	2 cut(s)	74, 665
Psp124BI	GAGCTC	1 cut(s)	712
Psp1406I	AACGTT	1 cut(s)	191
Psp6I	CCWGG	3 cut(s)	400, 716, 908
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	3 cut(s)	400, 716, 908
PspN4I	GGNNCC	3 cut(s)	450, 567, 928
PspPI	GGNCC	1 cut(s)	208
PsuI	RGATCY	3 cut(s)	448, 520, 886
RsaI	GTAC	2 cut(s)	218, 799
RsaNI	GTAC	2 cut(s)	217, 798
RseI	CAYNNNNRTG	3 cut(s)	417, 552, 758
SacI	GAGCTC	1 cut(s)	712
SalI	GTCGAC	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	463
SaqAI	TTAA	2 cut(s)	53, 846
SatI	GCNGC	3 cut(s)	410, 809, 972
Sau3AI	GATC	4 cut(s)	448, 520, 886, 1028
Sau96I	GGNCC	1 cut(s)	208
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	2 cut(s)	48, 589
ScrFI	CCNGG	3 cut(s)	402, 718, 910
SduI	GDGCHC	4 cut(s)	475, 712, 871, 1003
SfaNI	GCATC	2 cut(s)	303, 349
SmiMI	CAYNNNNRTG	3 cut(s)	417, 552, 758
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SpeI	ACTAGT	1 cut(s)	56
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	7 cut(s)	50, 69, 142, 241, 352, 457, 777
SspMI	CTAG	4 cut(s)	57, 264, 275, 507
SstI	GAGCTC	1 cut(s)	712
StyD4I	CCNGG	3 cut(s)	400, 716, 908
StyI	CCWWGG	5 cut(s)	34, 322, 452, 628, 725
TaaI	ACNGT	4 cut(s)	216, 302, 514, 861
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	99, 115, 593, 775
TasI	AATT	7 cut(s)	50, 69, 142, 241, 352, 457, 777
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	2 cut(s)	53, 846
Tru9I	TTAA	2 cut(s)	53, 846
TscAI	CASTG	2 cut(s)	307, 760
TseFI	GTSAC	2 cut(s)	224, 422
TseI	GCWGC	3 cut(s)	409, 808, 971
Tsp45I	GTSAC	2 cut(s)	224, 422
TspDTI	ATGAA	4 cut(s)	102, 360, 410, 806
TspRI	CASTG	2 cut(s)	307, 760
Van91I	CCANNNNNTGG	1 cut(s)	959
XapI	RAATTY	2 cut(s)	352, 457
XceI	RCATGY	3 cut(s)	125, 557, 1024
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XmiI	GTMKAC	3 cut(s)	593, 905, 1013
XmnI	GAANNNNTTC	1 cut(s)	781
XspI	CTAG	4 cut(s)	57, 264, 275, 507
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.