Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003820

Physical Location & Seq

Genomic Coordinates Forward (+)

10954171 .. 10955336

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCCGAGCAAGGTTTCATGGATAAGGCCAAGAACTTTGTCACAGATAAGATATCAAATGTGGCGAAACCAGAAGCAGAAGTCACAGATGTTGATTTCAAGAAGATGGGCTTGAGCCATGTGGAGTACCTTTCCAAGGTGTCCGTGACCAATCCCTACAGCCATTCCATCCCCATTTGTGATATCAAATACACCCTCAAAAGCGTTAACAGGGAGATTGCATCGGGGACTATACCGGACCCTGGATCACTAAAGGCAAGTGACATAACTGTGCTGGAGGTGCTATTGAAGGTGCCACATAGCATATTGGTGACATTGGCAAAGGATCTGGGTGCAGATTGGGACTTTGACTATGAGTTGGACATAGGCCTCACTATTGACCTTCCTGTCATCGGCAACTTCACCATACCACTCAACAAGAAGGGAGAGTTCAAGCTTCCCACCCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

151

Amino Acids

16.54

Weight (kDa)

5.13

Isoelectric Point (pI)

5.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01470 AT2G46140
fragaria_vesca	FvH4_4g03320 FvH4_7g15440 FvH4_7g15460
malus_domestica	MD01G1071800.v1.1 MD01G1071900.v1.1 MD07G1130800.v1.1 MD07G1130900.v1.1
prunus_persica	Prupe.2G178000_v2.0.a1 Prupe.2G178100_v2.0.a1 Prupe.2G178200_v2.0.a1
pyrus_communis	pycom01g10090 pycom01g10110 pycom07g12790 pycom07g12800
rosa_chinensis	RchiOBHm_Chr1g0357761 RchiOBHm_Chr1g0357771
rosa_laevigata	RLG00000027998 RLG00000027999
rosa_multiflora	Rmu_ssc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_4G00298530
rosa_rugosa	Rorug01G0258400 Rorug01G0258500
rosa_samantha	Rh1AG272300 Rh1AG272400 Rh1BG239500 Rh1BG239600 Rh1CG256200 Rh1CG256300 Rh1DG267800 Rh1DG267900
rosa_wichuraiana	Rw1G024300 Rw1G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	292
AclWI	GGATC	2 cut(s)	253, 333
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	136, 242, 392
AgsI	TTSAA	3 cut(s)	100, 289, 433
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
AlwI	GGATC	2 cut(s)	253, 333
AoxI	GGCC	3 cut(s)	3, 27, 367
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	322, 394
AvaII	GGWCC	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	292
BccI	CCATC	2 cut(s)	100, 176
BciT130I	CCWGG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	240, 294
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	135, 241
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 242, 392
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	135, 241
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	136, 242, 392
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	3 cut(s)	5, 29, 369
BshNI	GGYRCC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	241, 356
BslI	CCNNNNNNNGG	3 cut(s)	136, 242, 392
BsmFI	GGGAC	2 cut(s)	241, 356
BsnI	GGCC	3 cut(s)	5, 29, 369
Bsp143I	GATC	2 cut(s)	245, 325
BspANI	GGCC	3 cut(s)	5, 29, 369
BspLI	GGNNCC	2 cut(s)	240, 294
BspPI	GGATC	2 cut(s)	253, 333
BspT107I	GGYRCC	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	135, 241
BssMI	GATC	2 cut(s)	245, 325
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	2 cut(s)	248, 328
BstMBI	GATC	2 cut(s)	245, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	3 cut(s)	5, 29, 369
BtsCI	GGATG	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	2 cut(s)	19, 119
CviJI	RGCY	7 cut(s)	5, 29, 111, 117, 162, 369, 436
CviKI_1	RGCY	7 cut(s)	5, 29, 111, 117, 162, 369, 436
CviQI	GTAC	1 cut(s)	127
DpnI	GATC	2 cut(s)	247, 327
DpnII	GATC	2 cut(s)	245, 325
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	369
Eco32I	GATATC	2 cut(s)	54, 184
Eco47I	GGWCC	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	241
EcoRV	GATATC	2 cut(s)	54, 184
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	22, 122
FaiI	YATR	9 cut(s)	20, 120, 233, 266, 300, 305, 354, 365, 407
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	2 cut(s)	241, 356
FatI	CATG	2 cut(s)	18, 118
FokI	GGATG	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	5, 29, 369
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	2 cut(s)	22, 122
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	434
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	2 cut(s)	322, 394
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	3 cut(s)	283, 392, 415
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	221, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
Hsp92II	CATG	2 cut(s)	22, 122
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	245, 325
LpnPI	CCDG	8 cut(s)	84, 196, 228, 249, 255, 260, 314, 399
LweI	GCATC	1 cut(s)	230
MaeIII	GTNAC	5 cut(s)	40, 82, 145, 260, 310
MalI	GATC	2 cut(s)	247, 327
MboI	GATC	2 cut(s)	245, 325
MboII	GAAGA	2 cut(s)	115, 439
MflI	RGATCY	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	3 cut(s)	206, 271, 380
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	269, 308
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	2 cut(s)	245, 325
NlaIII	CATG	2 cut(s)	22, 122
NlaIV	GGNNCC	2 cut(s)	240, 294
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	5 cut(s)	40, 82, 145, 260, 310
PceI	AGGCCT	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	240, 294
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	2 cut(s)	269, 308
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	245, 325
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	7 cut(s)	16, 132, 141, 282, 294, 384, 438
SfaNI	GCATC	1 cut(s)	230
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	2 cut(s)	269, 308
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SseBI	AGGCCT	1 cut(s)	369
StuI	AGGCCT	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	5 cut(s)	40, 82, 145, 260, 310
Tsp45I	GTSAC	5 cut(s)	40, 82, 145, 260, 310
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.