Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003820

Physical Location & Seq

Genomic Coordinates Forward (+)

17702777 .. 17704221

Gene Structure 1445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1071800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCGGGGTTGGTGGACAAGGCCAAAAACTATGTCGCAGAAAAGATAGCAAATGTGCCGAAGCCTGATGCAAGTCTCACAGGTGTTGATTTCAAGAAAGTGAGTTTTGACTCTGCGGATTACATTGCAAAGGTCGCTGTGAACAATCCCTACCCACATCCTCTCCCCATCTGCGAGATCAAATACACCCTCAAAAGCATTGGCAATGTTATTGCGTCTGGGAACATGCCAGACCCTGGCTCGATAAAGGCAAGTGGCACTACTGTATTAGAGGTGCCGGTGAAGGTGCCGCATAGTATTATTGTGACATTGGTAAAGGACATTGCTAGGGATTGGGACATCGACTATGAGTTGGATTTGGGTCTCATCATTGACCTTCCTCTAGTTGGAAACATTACCATACCACTCAATAGGAAGGGCGAAATCAAGCTTCCCACCTTATCTGAAGTCATTTGGGGTTCAAAGGATGAAGCTGCGAAGGAGGAAGCTTTAAAACAGGCTTCCAAAGAGACTAAAAAGGAGATTTCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

178

Amino Acids

19.19

Weight (kDa)

6.15

Isoelectric Point (pI)

17.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	44 - 140	8.1e-24	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01470 AT2G46140
fragaria_vesca	FvH4_4g03320 FvH4_7g15440 FvH4_7g15460
malus_domestica	MD01G1071800.v1.1 MD01G1071900.v1.1 MD07G1130800.v1.1 MD07G1130900.v1.1
prunus_persica	Prupe.2G178000_v2.0.a1 Prupe.2G178100_v2.0.a1 Prupe.2G178200_v2.0.a1
pyrus_communis	pycom01g10090 pycom01g10110 pycom07g12790 pycom07g12800
rosa_chinensis	RchiOBHm_Chr1g0357761 RchiOBHm_Chr1g0357771
rosa_laevigata	RLG00000027998 RLG00000027999
rosa_multiflora	Rmu_ssc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_4G00298530
rosa_rugosa	Rorug01G0258400 Rorug01G0258500
rosa_samantha	Rh1AG272300 Rh1AG272400 Rh1BG239500 Rh1BG239600 Rh1CG256200 Rh1CG256300 Rh1DG267800 Rh1DG267900
rosa_wichuraiana	Rw1G024300 Rw1G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	274, 286
AccB7I	CCANNNNNTGG	1 cut(s)	236
AciI	CCGC	2 cut(s)	116, 290
AcuI	CTGAAG	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	236, 386
AgsI	TTSAA	3 cut(s)	94, 462, 528
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	3 cut(s)	430, 473, 488
AluI	AGCT	3 cut(s)	430, 473, 488
Alw26I	GTCTC	3 cut(s)	80, 368, 503
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	473
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AsuHPI	GGTGA	1 cut(s)	292
BanI	GGYRCC	2 cut(s)	274, 286
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	80, 368, 503
BfaI	CTAG	2 cut(s)	327, 383
BisI	GCNGC	2 cut(s)	290, 474
BlsI	GCNGC	2 cut(s)	291, 475
Bme1390I	CCNGG	1 cut(s)	237
BmiI	GGNNCC	2 cut(s)	276, 288
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 386
Bse118I	RCCGGY	1 cut(s)	277
Bse3DI	GCAATG	3 cut(s)	123, 211, 321
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	2 cut(s)	157, 472
BseLI	CCNNNNNNNGG	2 cut(s)	236, 386
BseMI	GCAATG	3 cut(s)	123, 211, 321
BseXI	GCAGC	1 cut(s)	460
BshFI	GGCC	1 cut(s)	23
BshNI	GGYRCC	2 cut(s)	274, 286
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	236, 386
BsmAI	GTCTC	3 cut(s)	80, 368, 503
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	2 cut(s)	116, 290
BspANI	GGCC	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	276, 288
BspT107I	GGYRCC	2 cut(s)	274, 286
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	3 cut(s)	123, 211, 321
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	265
BstF5I	GGATG	2 cut(s)	157, 472
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	3 cut(s)	80, 368, 503
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	157, 472
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr10I	RCCGGY	1 cut(s)	277
CseI	GACGC	1 cut(s)	204
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	7 cut(s)	23, 64, 240, 430, 473, 488, 500
CviKI_1	RGCY	7 cut(s)	23, 64, 240, 430, 473, 488, 500
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
DraI	TTTAAA	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	229
FaiI	YATR	5 cut(s)	33, 227, 294, 348, 401
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	290, 474
FokI	GGATG	2 cut(s)	144, 479
Fsp4HI	GCNGC	2 cut(s)	290, 474
FspBI	CTAG	2 cut(s)	327, 383
GluI	GCNGC	2 cut(s)	290, 474
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	229
HindIII	AAGCTT	2 cut(s)	428, 486
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	16, 142
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	16, 142
HpyAV	CCTTC	4 cut(s)	277, 386, 409, 472
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	71, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	177
LpnPI	CCDG	8 cut(s)	66, 78, 204, 222, 243, 249, 291, 482
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	327, 383
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	2 cut(s)	333, 367
MnlI	CCTC	5 cut(s)	171, 200, 265, 390, 475
MseI	TTAA	1 cut(s)	491
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	2 cut(s)	276, 288
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	291, 475
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	276, 288
PsrI	GAACNNNNNNTAC	2 cut(s)	134, 166
PstNI	CAGNNNCTG	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	2 cut(s)	290, 474
Sau3AI	GATC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	9 cut(s)	85, 135, 276, 288, 378, 432, 440, 475, 490
SfaNI	GCATC	1 cut(s)	58
SsiI	CCGC	2 cut(s)	116, 290
SspMI	CTAG	2 cut(s)	327, 383
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	2 cut(s)	242, 342
TauI	GCSGC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	483
Van91I	CCANNNNNTGG	1 cut(s)	236
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	2 cut(s)	327, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.