Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003820

Physical Location & Seq

Genomic Coordinates Forward (+)

50539697 .. 50540266

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTCAGTTCTTTGACAAGGCCAAGAACTTCGTGACAGACAAACTGGCCAACGTAGAAAAGCCAGAGGCAGATCTCACAGATGTTGACTTCAGGAAGGCGAGCTTCGATTCCGTGGAGTACATCGGTAAGGTCCATGTCAAAAACCCCTATGATCACTCCATCCCCATCTGCCAGATCTCCTACACCCTCAAATGTGTTGGCAGGGAGATTATATCTGGGACAGTTCCGGACCCCGGATCAATTAAGGCAAGTGATGTTACCCTTCTGGAGGTACCAGTGAAGGTGCCACACAGTGTATTGATGACATTGGTGAAGGATGTTGGGGCAGATTGGGACATTGATTATGAGTTGATATTGGGTCTCACCATTGACCTTCCTGTGATTGGGAACTTCACCATACCTTTGTCGAAGAAGGGAGAGATCAAGCTTCCCAGCCTCACCAGCCTCTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

152

Amino Acids

16.72

Weight (kDa)

5.12

Isoelectric Point (pI)

10.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	44 - 140	5.8e-22	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01470 AT2G46140
fragaria_vesca	FvH4_4g03320 FvH4_7g15440 FvH4_7g15460
malus_domestica	MD01G1071800.v1.1 MD01G1071900.v1.1 MD07G1130800.v1.1 MD07G1130900.v1.1
prunus_persica	Prupe.2G178000_v2.0.a1 Prupe.2G178100_v2.0.a1 Prupe.2G178200_v2.0.a1
pyrus_communis	pycom01g10090 pycom01g10110 pycom07g12790 pycom07g12800
rosa_chinensis	RchiOBHm_Chr1g0357761 RchiOBHm_Chr1g0357771
rosa_laevigata	RLG00000027998 RLG00000027999
rosa_multiflora	Rmu_ssc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_4G00298530
rosa_rugosa	Rorug01G0258400 Rorug01G0258500
rosa_samantha	Rh1AG272300 Rh1AG272400 Rh1BG239500 Rh1BG239600 Rh1CG256200 Rh1CG256300 Rh1DG267800 Rh1DG267900
rosa_wichuraiana	Rw1G024300 Rw1G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	2 cut(s)	274, 286
AccIII	TCCGGA	1 cut(s)	229
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	76
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	122, 276
AfiI	CCNNNNNNNGG	3 cut(s)	236, 271, 386
AluBI	AGCT	2 cut(s)	105, 430
AluI	AGCT	2 cut(s)	105, 430
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	247
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	2 cut(s)	21, 48
Asp718I	GGTACC	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	133, 232
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	4 cut(s)	325, 358, 388, 433
AvaII	GGWCC	2 cut(s)	133, 232
BalI	TGGCCA	1 cut(s)	50
BanI	GGYRCC	2 cut(s)	274, 286
BccI	CCATC	2 cut(s)	170, 176
BclI	TGATCA	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	368
BglII	AGATCT	2 cut(s)	73, 177
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	2 cut(s)	133, 232
BmgT120I	GGNCC	2 cut(s)	133, 232
BmiI	GGNNCC	3 cut(s)	234, 276, 288
BmrFI	CCNGG	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	114, 235
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 271, 386
Bse1I	ACTGG	2 cut(s)	51, 278
BseAI	TCCGGA	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	114, 235
BseGI	GGATG	2 cut(s)	162, 325
BseLI	CCNNNNNNNGG	3 cut(s)	236, 271, 386
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	2 cut(s)	51, 278
BseYI	CCCAGC	1 cut(s)	434
BshFI	GGCC	2 cut(s)	23, 50
BshNI	GGYRCC	2 cut(s)	274, 286
BsiSI	CCGG	2 cut(s)	230, 237
BslFI	GGGAC	2 cut(s)	235, 350
BslI	CCNNNNNNNGG	3 cut(s)	236, 271, 386
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	235, 350
BsnI	GGCC	2 cut(s)	23, 50
Bso31I	GGTCTC	1 cut(s)	368
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	5 cut(s)	73, 154, 177, 239, 423
BspANI	GGCC	2 cut(s)	23, 50
BspCNI	CTCAG	1 cut(s)	19
BspEI	TCCGGA	1 cut(s)	229
BspLI	GGNNCC	3 cut(s)	234, 276, 288
BspPI	GGATC	1 cut(s)	247
BspT107I	GGYRCC	2 cut(s)	274, 286
BspTNI	GGTCTC	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	51, 278
BssECI	CCNNGG	2 cut(s)	114, 235
BssMI	GATC	5 cut(s)	73, 154, 177, 239, 423
Bst4CI	ACNGT	2 cut(s)	226, 296
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	162, 325
BstKTI	GATC	5 cut(s)	76, 157, 180, 242, 426
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	5 cut(s)	73, 154, 177, 239, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	235
BstX2I	RGATCY	2 cut(s)	73, 177
BstYI	RGATCY	2 cut(s)	73, 177
BsuRI	GGCC	2 cut(s)	23, 50
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	162, 325
BtsIMutI	CAGTG	2 cut(s)	285, 301
Cac8I	GCNNGC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	133, 232
Csp6I	GTAC	2 cut(s)	121, 275
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	8 cut(s)	5, 23, 50, 64, 105, 430, 438, 447
CviKI_1	RGCY	8 cut(s)	5, 23, 50, 64, 105, 430, 438, 447
CviQI	GTAC	2 cut(s)	121, 275
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	5 cut(s)	75, 156, 179, 241, 425
DpnII	GATC	5 cut(s)	73, 154, 177, 239, 423
DraIII	CACNNNGTG	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	133, 232
Eco57I	CTGAAG	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	269
FaeI	CATG	1 cut(s)	140
FaiI	YATR	5 cut(s)	138, 153, 215, 348, 401
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	2 cut(s)	235, 350
FatI	CATG	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	154
FokI	GGATG	2 cut(s)	149, 332
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	23, 50
HapII	CCGG	2 cut(s)	230, 237
Hin1II	CATG	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	2 cut(s)	230, 237
HphI	GGTGA	4 cut(s)	325, 358, 388, 433
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	4 cut(s)	34, 94, 230, 269
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	6 cut(s)	91, 275, 277, 310, 386, 409
HpyCH4III	ACNGT	2 cut(s)	226, 296
HpyCH4IV	ACGT	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	229
KpnI	GGTACC	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	73, 154, 177, 239, 423
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	34, 259
MalI	GATC	5 cut(s)	75, 156, 179, 241, 425
MboI	GATC	5 cut(s)	73, 154, 177, 239, 423
MboII	GAAGA	1 cut(s)	424
MflI	RGATCY	2 cut(s)	73, 177
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	1 cut(s)	243
MluNI	TGGCCA	1 cut(s)	50
MnlI	CCTC	5 cut(s)	61, 200, 265, 449, 458
Mox20I	TGGCCA	1 cut(s)	50
MroI	TCCGGA	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	2 cut(s)	230, 237
MspR9I	CCNGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	5 cut(s)	73, 154, 177, 239, 423
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	3 cut(s)	234, 276, 288
NmuCI	GTSAC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	434
PspN4I	GGNNCC	3 cut(s)	234, 276, 288
PspPI	GGNCC	2 cut(s)	133, 232
PsuI	RGATCY	2 cut(s)	73, 177
RsaI	GTAC	2 cut(s)	122, 276
RsaNI	GTAC	2 cut(s)	121, 275
SaqAI	TTAA	1 cut(s)	246
Sau3AI	GATC	5 cut(s)	73, 154, 177, 239, 423
Sau96I	GGNCC	2 cut(s)	133, 232
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	8 cut(s)	57, 107, 135, 276, 288, 378, 406, 432
SinI	GGWCC	2 cut(s)	133, 232
Sse9I	AATT	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	226, 296
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	108, 410
TasI	AATT	1 cut(s)	243
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	285, 301
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	285, 301
VpaK11BI	GGWCC	2 cut(s)	133, 232
XagI	CCTNNNNNAGG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.