Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003820

Physical Location & Seq

Genomic Coordinates Forward (+)

36776438 .. 36779663

Gene Structure 3226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0258400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3123 bp

ATGAAAACTTTGCTACATTTCTTCCTTTTCTTGATCACACACTGGGTCAGTATCATCATCCCAGCAGTTCACAGCCAGTGTATTGAAGACCAGCAACTCTCATTGCTCCAATTCAAGAAAAGCATCGTGTTCGGTTATTCCACCAAGCTTATTTCTTGGAATGCAAGTACTGATTGTTGTTCTTGGGTCGGCGTCACTTGCAGCCGTAATGGGCGTGTTCTGGGTCTTGACTTAAGCAGCGAACATATCTCAGCCGGAATTGACAATTCCAGCAGTCTCTTCCATCTTCATTATCTTCAGAGCCTCAATCTGGCGGACAACCTTCTTGGCAATTACTCTCAATCAATTCCATCCGCCATCGGAAAGCTCGTGAACTTGAGGTATCTGAATTTATCTCTTAATCATTATTCAGGGCAAATTCCCATCGAGATTTCTCGCTTGAGGAGGTTGGTAGTTCTTGATCTTTCTAACAGTTATGGGTTAAACCTTGGAAGTCCAAATTTACACATGTTGGTTCACAACCTCACAGAGCTTAGAGAGTTATATCTTGATGGTGTCCAAATATCAGAACAGGGGAGTCAGTGGTGCCAAGCCATATCATCTTCCGTTCCCAACCTCAGGGTCTTGAGCATGTCCCATTGTGATCTTTCAGGCCCTCTTCATGAGTCCTTTGCTAAGCTTCAGTCTCTATCTGTGATTAGGTTGGACAGGAACAGTATCTCTGCGCCAGGATTCTTTGCCAACTTTTCAAACTTGACTGTCTTGAGTCTCCCGATATGCGGGTTGCAAGGAACATTTCCCAAAGAGATCTTTCAGTTACCTTCTCTACAAAGTATTGACCTCTCATTTAATTACCAACTTGATGGTTCCTTGCCAGAATTCCCAAGGAATGGATCTCTTCAGTACCTGGATCTAAGCGGGACAAAATTTTCAGGGTTATTGCCAAATTCTATTGGCAATCTCAAAATGTTGTCCACCATAAATGTTGTATATTGCAATTTCACCGGACCGATCCCCAAGTCAATGACAAACCTTACACAATTGGTTTCTTTGTCGATGTCTGAAAACAAGTTGGAAGGTTCAATTCCGTCATTCAGTGGGGCCAATAATGTGAACTTCATAGACCTTTCCTACAATGGTCTAACAGGTACTATTAATTCCACCTACTGGGGAAACCTTACTAAGCTATCCTTTCTTGATTTGAGATCCAATAAGCTCGATGGGAATATCCCAGCATCTCTTTTTTCACTTCCCCTTTTGGATTATTTGTGGATGTCTGAAAACAAGTTTGAAGGTTCAATTCCATCATTCAGTGGGGCCAAGAATGTGAACTTCATAGACCTTTCCTACAATGGTCTAACAGGTACTATTAACTCCACCCACTGGGGAAACCTTACTAAGCTATCTGAACTCAATTTGAGATCCAATAAGCTCGATGGGAATATCCCAGCATCTCTGTTTTCTCTTCCCCTGTTGCGTAGTCTAGATCTTTCCAGCAATCAATTCTCTGGTCCATTCCCTGAAATTTCAAATGTGTCTTCCTACTTGCTGAATGGTCCTGATCTTGAACTTTATTTGAGAAATCAATCGAACTTAAATACTTTGGACCTTTCAGAGAACCAGATAAATGGCAAGATACCCGACTGGATTTGGAGTTTAAATAATCTCATTCTCCTAAATCTTTCTTGCAACTCCCTAGATTCTCTAGAAGTTCATTCAATTAATCTCACTAATCTAGGTTACCTTGACCTTCATTCCAACCAGCTTCATGGGCAACTCCCAATTTTTCCATCAACTGTCCGTCTCCATTATCTAGATTTCTCCAGGAATTATTTCAGCTCTATCGTACCGGGTACCTTTGGAGAAATGTTTCAAGATCCTCACGACACAGGCTTTTTCTCGCTTTCGAGCAATAACCTCACTGGGATCATTCCAGAATCATTATGCAATATACAATATCTTGAGTTTCTTGATCTGTCCAATAATTCTTTGAGTGGCACGGTTCCCCAATGCCTAACTACAATGACGAGGCTTTCGGTACTCAACTTAAGGAGGAATAATCTTACAAATGTTGATGACTTCTCTCAGAATTGCCAGTTAATAAGTCTAGACATCAGTGAAAATCACCTTCAAGGCCGGTTTCTAAAATCTCTTGTCAACTGCACCCAGTTAGCGATTTTAAACCTTAGAAACAATTTGATAACAGAACCATTTCCCTGCTTTTTAAGGAACACATCCAGCTTGCGTGTCCTTGTCTTGCGATCCAATAAATTTTATGGGCGCATTGGATGTCGCAAGACTAATGGCACTTGGCCAATACTTCAAATCATAGACTTAGCTCACAACAATTTTAGTGGTGAAGTACCTGGAACAGCTCTGGCAACTTGGCAGGCCATGAGGACAAAAGATGATGCCCCAGGGAAGATCAATAGCCTTCAATTGAAGACCGGAGTTTTATATCAAGAAGATACAATCACAGTCACCAACAAAGGTTTAGAGATGGAGCTGGAGAATGTTTTATCTATCTTCATCTCCATTGACTTCTCGTGCAACAAGTTCAATGGATCAATACCCGAGGAAATTGGAGAACTCCAATCATTGTATGCCCTCAACTTGTCCAACAATGCTTTCACAGGTGCAGTTCCATCATCACTAAGTAACTTGAGTCAGCTAGAGTCCTTGGACCTCTCGAAAAACAAACTGAGCGGTCAAATCCCACCGGAGCTTACAAAACTCACTTTCCTTGCATTCTTGAATCTCTCATATAATCAATTGGTCGGGAGGATACCAAGCGGTGCTCAATTTTCAACATTTGATGCAGCTTCCTTCGAAGGTAATAAAGGATTATGGGGGCCTCCTTTAACTGCAGGGTTCTCACCAAAGTCGGAAGGAAACCATTCAAATCCTGGACATGAGATTGATTGGGATATTATCTGTCCTGAAATTGGGTTTACATGTGGGTTTGGGATTGCCATCGGGTCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTTTTACAGAGCTATGTATAACATGCTTCTAAAGATATTCCCTCAGCTGGAACAAAGATTTGGTCATCACAGGAGACATGTTTATGTACATCAAAGATACTGGAGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

1040

Amino Acids

115.96

Weight (kDa)

6.5

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 68	4.8e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	68 - 282	1.4e-11	Leucine-rich repeat region
LRR_14	PF23598	299 - 356	4.5e-07	Leucine-rich repeat region
LRR_14	PF23598	391 - 599	1.8e-06	Leucine-rich repeat region
LRR_8	PF13855	446 - 502	8e-06	Leucine rich repeat
LRR_8	PF13855	530 - 589	6.5e-06	Leucine rich repeat
LRR_8	PF13855	634 - 688	2.7e-06	Leucine rich repeat
LRR_14	PF23598	856 - 920	8.9e-06	Leucine-rich repeat region
LRR_8	PF13855	866 - 925	2.6e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01470 AT2G46140
fragaria_vesca	FvH4_4g03320 FvH4_7g15440 FvH4_7g15460
malus_domestica	MD01G1071800.v1.1 MD01G1071900.v1.1 MD07G1130800.v1.1 MD07G1130900.v1.1
prunus_persica	Prupe.2G178000_v2.0.a1 Prupe.2G178100_v2.0.a1 Prupe.2G178200_v2.0.a1
pyrus_communis	pycom01g10090 pycom01g10110 pycom07g12790 pycom07g12800
rosa_chinensis	RchiOBHm_Chr1g0357761 RchiOBHm_Chr1g0357771
rosa_laevigata	RLG00000027998 RLG00000027999
rosa_multiflora	Rmu_ssc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_4G00298530
rosa_rugosa	Rorug01G0258400 Rorug01G0258500
rosa_samantha	Rh1AG272300 Rh1AG272400 Rh1BG239500 Rh1BG239600 Rh1CG256200 Rh1CG256300 Rh1DG267800 Rh1DG267900
rosa_wichuraiana	Rw1G024300 Rw1G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1853
AccB1I	GGYRCC	2 cut(s)	585, 1853
AccB7I	CCANNNNNTGG	3 cut(s)	890, 1167, 1383
AccBSI	CCGCTC	1 cut(s)	2706
AciI	CCGC	6 cut(s)	314, 354, 780, 918, 2706, 2793
AclWI	GGATC	9 cut(s)	901, 918, 1006, 1200, 1416, 1871, 1934, 2256, 2572
AcoI	YGGCCR	1 cut(s)	2312
AcsI	RAATTY	8 cut(s)	388, 417, 499, 878, 926, 946, 1524, 2270
AcuI	CTGAAG	3 cut(s)	281, 665, 884
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	9 cut(s)	169, 905, 1150, 1366, 1848, 1855, 2040, 2364, 3099
AfiI	CCNNNNNNNGG	8 cut(s)	310, 618, 779, 890, 1167, 1383, 2945, 3058
AflII	CTTAAG	2 cut(s)	232, 2047
AflIII	ACRYGT	3 cut(s)	507, 2954, 3088
AjnI	CCWGG	6 cut(s)	727, 906, 1823, 2365, 2416, 2905
AjuI	GAANNNNNNNTTGG	4 cut(s)	2612, 2644, 3054, 3086
Alw21I	GWGCWC	1 cut(s)	2800
Alw26I	GTCTC	6 cut(s)	281, 690, 773, 1808, 3079, 3109
AlwI	GGATC	9 cut(s)	901, 918, 1006, 1200, 1416, 1871, 1934, 2256, 2572
AlwNI	CAGNNNCTG	1 cut(s)	907
Ama87I	CYCGRG	1 cut(s)	2573
AoxI	GGCC	7 cut(s)	652, 1101, 1317, 2134, 2312, 2391, 2852
ApeKI	GCWGC	3 cut(s)	201, 237, 2819
ApoI	RAATTY	8 cut(s)	388, 417, 499, 878, 926, 946, 1524, 2270
ArsI	GACNNNNNNTTYG	4 cut(s)	2017, 2049, 3058, 3090
AseI	ATTAAT	2 cut(s)	1155, 1722
Asp700I	GAANNNNTTC	4 cut(s)	1832, 1869, 2211, 2896
Asp718I	GGTACC	1 cut(s)	1853
AspLEI	GCGC	2 cut(s)	727, 2283
AspS9I	GGNCC	9 cut(s)	653, 1007, 1101, 1317, 1511, 1556, 1606, 2683, 2852
AsuC2I	CCSGG	1 cut(s)	1851
AsuHPI	GGTGA	5 cut(s)	994, 2117, 2369, 2473, 2868
AsuII	TTCGAA	1 cut(s)	2829
AvaI	CYCGRG	1 cut(s)	2573
AvaII	GGWCC	5 cut(s)	1007, 1511, 1556, 1606, 2683
AxyI	CCTNAGG	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	2314
BanI	GGYRCC	2 cut(s)	585, 1853
BauI	CACGAG	2 cut(s)	368, 2545
BbsI	GAAGAC	3 cut(s)	93, 1530, 2450
Bbv12I	GWGCWC	1 cut(s)	2800
BbvCI	CCTCAGC	1 cut(s)	3054
BbvI	GCAGC	3 cut(s)	213, 249, 2831
BceAI	ACGGC	1 cut(s)	189
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	6 cut(s)	729, 908, 1825, 2367, 2418, 2907
BciVI	GTATCC	1 cut(s)	2778
BclI	TGATCA	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	1851
BcoDI	GTCTC	6 cut(s)	281, 690, 773, 1808, 3079, 3109
BfaI	CTAG	7 cut(s)	1484, 1697, 1706, 1736, 1814, 2108, 2672
BfmI	CTRYAG	1 cut(s)	2865
BfrI	CTTAAG	2 cut(s)	232, 2047
BfuI	GTATCC	1 cut(s)	2778
BglII	AGATCT	2 cut(s)	807, 1486
BisI	GCNGC	3 cut(s)	202, 238, 2820
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	3 cut(s)	203, 239, 2821
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	7 cut(s)	729, 908, 1825, 1851, 2367, 2418, 2907
Bme18I	GGWCC	5 cut(s)	1007, 1511, 1556, 1606, 2683
BmeT110I	CYCGRG	1 cut(s)	2573
BmgT120I	GGNCC	9 cut(s)	653, 1007, 1101, 1317, 1511, 1556, 1606, 2683, 2852
BmiI	GGNNCC	7 cut(s)	587, 868, 1102, 1318, 1855, 2004, 2853
BmrFI	CCNGG	7 cut(s)	729, 908, 1825, 1851, 2367, 2418, 2907
BmrI	ACTGGG	5 cut(s)	52, 1177, 1393, 1932, 2161
BmsI	GCATC	5 cut(s)	132, 1244, 1460, 2401, 2806
BmuI	ACTGGG	5 cut(s)	52, 1177, 1393, 1932, 2161
BpiI	GAAGAC	3 cut(s)	93, 1530, 2450
BpmI	CTGGAG	2 cut(s)	1807, 2528
Bpu10I	CCTNAGC	1 cut(s)	3054
Bpu1102I	GCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	2829
BpuEI	CTTGAG	6 cut(s)	397, 460, 646, 784, 1982, 2683
BpuMI	CCSGG	1 cut(s)	1851
BsaBI	GATNNNNATC	1 cut(s)	2972
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	6 cut(s)	487, 884, 2416, 2417, 2574, 2679
BsaWI	WCCGGW	3 cut(s)	1004, 2447, 2719
Bsc4I	CCNNNNNNNGG	8 cut(s)	310, 618, 779, 890, 1167, 1383, 2945, 3058
Bse118I	RCCGGY	1 cut(s)	2136
Bse1I	ACTGG	9 cut(s)	47, 76, 1172, 1388, 1649, 1927, 2095, 2167, 3116
Bse21I	CCTNAGG	1 cut(s)	617
Bse3DI	GCAATG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	2972
BseBI	CCWGG	6 cut(s)	729, 908, 1825, 2367, 2418, 2907
BseDI	CCNNGG	6 cut(s)	487, 884, 2416, 2417, 2574, 2679
BseGI	GGATG	5 cut(s)	57, 350, 1278, 2234, 2294
BseJI	GATNNNNATC	1 cut(s)	2972
BseLI	CCNNNNNNNGG	8 cut(s)	310, 618, 779, 890, 1167, 1383, 2945, 3058
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	5 cut(s)	264, 631, 2099, 2693, 3068
BseNI	ACTGG	9 cut(s)	47, 76, 1172, 1388, 1649, 1927, 2095, 2167, 3116
BseRI	GAGGAG	1 cut(s)	457
BseXI	GCAGC	3 cut(s)	213, 249, 2831
BseYI	CCCAGC	3 cut(s)	61, 1231, 1447
BsgI	GTGCAG	2 cut(s)	2146, 2658
BshFI	GGCC	7 cut(s)	654, 1103, 1319, 2136, 2314, 2393, 2854
BshNI	GGYRCC	2 cut(s)	585, 1853
BsiHKAI	GWGCWC	1 cut(s)	2800
BsiHKCI	CYCGRG	1 cut(s)	2573
BsiSI	CCGG	6 cut(s)	255, 1005, 1850, 2137, 2448, 2720
BslFI	GGGAC	2 cut(s)	619, 934
BslI	CCNNNNNNNGG	8 cut(s)	310, 618, 779, 890, 1167, 1383, 2945, 3058
BsmAI	GTCTC	6 cut(s)	281, 690, 773, 1808, 3079, 3109
BsmBI	CGTCTC	2 cut(s)	1808, 3109
BsmFI	GGGAC	2 cut(s)	619, 934
BsmI	GAATGC	2 cut(s)	166, 2747
BsnI	GGCC	7 cut(s)	654, 1103, 1319, 2136, 2314, 2393, 2854
BsoBI	CYCGRG	1 cut(s)	2573
Bsp119I	TTCGAA	1 cut(s)	2829
Bsp1286I	GDGCHC	1 cut(s)	2800
Bsp1407I	TGTACA	1 cut(s)	3097
Bsp1720I	GCTNAGC	1 cut(s)	675
BspACI	CCGC	6 cut(s)	314, 354, 780, 918, 2706, 2793
BspANI	GGCC	7 cut(s)	654, 1103, 1319, 2136, 2314, 2393, 2854
BspCNI	CTCAG	5 cut(s)	263, 630, 2098, 2694, 3067
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	7 cut(s)	587, 868, 1102, 1318, 1855, 2004, 2853
BspMAI	CTGCAG	1 cut(s)	2869
BspPI	GGATC	9 cut(s)	901, 918, 1006, 1200, 1416, 1871, 1934, 2256, 2572
BspT104I	TTCGAA	1 cut(s)	2829
BspT107I	GGYRCC	2 cut(s)	585, 1853
BspTI	CTTAAG	2 cut(s)	232, 2047
BsrBI	CCGCTC	1 cut(s)	2706
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	2136
BsrGI	TGTACA	1 cut(s)	3097
BsrI	ACTGG	9 cut(s)	47, 76, 1172, 1388, 1649, 1927, 2095, 2167, 3116
BssAI	RCCGGY	1 cut(s)	2136
BssECI	CCNNGG	6 cut(s)	487, 884, 2416, 2417, 2574, 2679
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	2 cut(s)	368, 2545
BssT1I	CCWWGG	3 cut(s)	487, 884, 2679
Bst2BI	CACGAG	2 cut(s)	368, 2545
Bst2UI	CCWGG	6 cut(s)	729, 908, 1825, 2367, 2418, 2907
Bst4CI	ACNGT	6 cut(s)	473, 716, 760, 1798, 2002, 2479
Bst6I	CTCTTC	4 cut(s)	284, 663, 903, 1470
BstACI	GRCGYC	1 cut(s)	192
BstAFI	CTTAAG	2 cut(s)	232, 2047
BstAUI	TGTACA	1 cut(s)	3097
BstBI	TTCGAA	1 cut(s)	2829
BstC8I	GCNNGC	2 cut(s)	2243, 2391
BstEII	GGTNACC	1 cut(s)	1739
BstF5I	GGATG	5 cut(s)	57, 350, 1278, 2234, 2294
BstHHI	GCGC	2 cut(s)	727, 2283
BstMAI	GTCTC	6 cut(s)	281, 690, 773, 1808, 3079, 3109
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 1771
BstNI	CCWGG	6 cut(s)	729, 908, 1825, 2367, 2418, 2907
BstNSI	RCATGY	5 cut(s)	511, 634, 2958, 3037, 3092
BstPI	GGTNACC	1 cut(s)	1739
BstSCI	CCNGG	7 cut(s)	727, 906, 1823, 1849, 2365, 2416, 2905
BstSFI	CTRYAG	1 cut(s)	2865
BstV1I	GCAGC	3 cut(s)	213, 249, 2831
BstV2I	GAAGAC	3 cut(s)	93, 1530, 2450
BstX2I	RGATCY	7 cut(s)	807, 893, 910, 1205, 1421, 1486, 1876
BstXI	CCANNNNNNTGG	3 cut(s)	863, 1628, 1769
BstYI	RGATCY	7 cut(s)	807, 893, 910, 1205, 1421, 1486, 1876
Bsu36I	CCTNAGG	1 cut(s)	617
BsuI	GTATCC	1 cut(s)	2778
BsuRI	GGCC	7 cut(s)	654, 1103, 1319, 2136, 2314, 2393, 2854
BtsCI	GGATG	5 cut(s)	57, 350, 1278, 2234, 2294
BtsIMutI	CAGTG	8 cut(s)	40, 83, 587, 1102, 1318, 1381, 1920, 2122
Cac8I	GCNNGC	2 cut(s)	2243, 2391
CaiI	CAGNNNCTG	1 cut(s)	907
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	2 cut(s)	727, 2283
Cfr10I	RCCGGY	1 cut(s)	2136
Cfr13I	GGNCC	9 cut(s)	653, 1007, 1101, 1317, 1511, 1556, 1606, 2683, 2852
CpoI	CGGWCCG	1 cut(s)	1007
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	9 cut(s)	168, 904, 1149, 1365, 1847, 1854, 2039, 2363, 3098
CspCI	CAANNNNNGTGG	2 cut(s)	2335, 2370
CspI	CGGWCCG	1 cut(s)	1007
CviAII	CATG	9 cut(s)	508, 631, 662, 1769, 2395, 2912, 2955, 3034, 3089
CviQI	GTAC	9 cut(s)	168, 904, 1149, 1365, 1847, 1854, 2039, 2363, 3098
DraI	TTTAAA	2 cut(s)	1659, 2181
EaeI	YGGCCR	1 cut(s)	2312
Eam1104I	CTCTTC	4 cut(s)	284, 663, 903, 1470
EarI	CTCTTC	4 cut(s)	284, 663, 903, 1470
EciI	GGCGGA	2 cut(s)	329, 343
Eco130I	CCWWGG	3 cut(s)	487, 884, 2679
Eco47I	GGWCC	5 cut(s)	1007, 1511, 1556, 1606, 2683
Eco57I	CTGAAG	3 cut(s)	281, 665, 884
Eco81I	CCTNAGG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	2573
Eco91I	GGTNACC	1 cut(s)	1739
EcoO109I	RGGNCCY	2 cut(s)	653, 2852
EcoO65I	GGTNACC	1 cut(s)	1739
EcoRI	GAATTC	1 cut(s)	878
EcoRII	CCWGG	6 cut(s)	727, 906, 1823, 2365, 2416, 2905
EcoT14I	CCWWGG	3 cut(s)	487, 884, 2679
ErhI	CCWWGG	3 cut(s)	487, 884, 2679
Esp3I	CGTCTC	2 cut(s)	1808, 3109
FaeI	CATG	9 cut(s)	511, 634, 665, 1772, 2398, 2915, 2958, 3037, 3092
FalI	AAGNNNNNCTT	2 cut(s)	1175, 1207
FaqI	GGGAC	2 cut(s)	619, 934
FatI	CATG	9 cut(s)	507, 630, 661, 1768, 2394, 2911, 2954, 3033, 3088
FauI	CCCGC	2 cut(s)	773, 911
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	202, 238, 2820
FokI	GGATG	5 cut(s)	44, 337, 1285, 2221, 2301
Fsp4HI	GCNGC	3 cut(s)	202, 238, 2820
FspBI	CTAG	7 cut(s)	1484, 1697, 1706, 1736, 1814, 2108, 2672
GlaI	GCGC	2 cut(s)	726, 2282
GluI	GCNGC	3 cut(s)	202, 238, 2820
GsaI	CCCAGC	3 cut(s)	65, 1235, 1451
GsuI	CTGGAG	2 cut(s)	1807, 2528
HaeIII	GGCC	7 cut(s)	654, 1103, 1319, 2136, 2314, 2393, 2854
HapII	CCGG	6 cut(s)	255, 1005, 1850, 2137, 2448, 2720
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	2 cut(s)	727, 2283
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	9 cut(s)	511, 634, 665, 1772, 2398, 2915, 2958, 3037, 3092
Hin6I	GCGC	2 cut(s)	725, 2281
HinP1I	GCGC	2 cut(s)	725, 2281
HincII	GTYRAC	1 cut(s)	2158
HindII	GTYRAC	1 cut(s)	2158
HindIII	AAGCTT	2 cut(s)	146, 677
HinfI	GANTC	9 cut(s)	577, 665, 732, 766, 1700, 1937, 2665, 2675, 2755
HpaII	CCGG	6 cut(s)	255, 1005, 1850, 2137, 2448, 2720
HphI	GGTGA	5 cut(s)	994, 2117, 2369, 2473, 2868
Hpy166II	GTNNAC	8 cut(s)	70, 373, 517, 975, 1114, 1330, 2158, 2952
Hpy8I	GTNNAC	8 cut(s)	70, 373, 517, 975, 1114, 1330, 2158, 2952
HpyCH4III	ACNGT	6 cut(s)	473, 716, 760, 1798, 2002, 2479
HpyCH4IV	ACGT	1 cut(s)	3118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 1771
HpySE526I	ACGT	1 cut(s)	3118
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	9 cut(s)	511, 634, 665, 1772, 2398, 2915, 2958, 3037, 3092
HspAI	GCGC	2 cut(s)	725, 2281
KpnI	GGTACC	1 cut(s)	1857
Ksp22I	TGATCA	1 cut(s)	33
LmnI	GCTCC	3 cut(s)	111, 2503, 2722
Lsp1109I	GCAGC	3 cut(s)	213, 249, 2831
LweI	GCATC	5 cut(s)	132, 1244, 1460, 2401, 2806
MaeI	CTAG	7 cut(s)	1484, 1697, 1706, 1736, 1814, 2108, 2672
MaeII	ACGT	1 cut(s)	3118
MaeIII	GTNAC	6 cut(s)	193, 816, 1739, 2479, 2657, 2979
MbiI	CCGCTC	1 cut(s)	2706
MfeI	CAATTG	3 cut(s)	1040, 2438, 2771
MflI	RGATCY	7 cut(s)	807, 893, 910, 1205, 1421, 1486, 1876
MhlI	GDGCHC	1 cut(s)	2800
MlsI	TGGCCA	1 cut(s)	2314
MluNI	TGGCCA	1 cut(s)	2314
MlyI	GAGTC	5 cut(s)	586, 674, 775, 2674, 2684
MmeI	TCCRAC	5 cut(s)	684, 1053, 1782, 2643, 2865
Mox20I	TGGCCA	1 cut(s)	2314
MroXI	GAANNNNTTC	4 cut(s)	1832, 1869, 2211, 2896
MscI	TGGCCA	1 cut(s)	2314
MslI	CAYNNNNRTG	1 cut(s)	3093
Msp20I	TGGCCA	1 cut(s)	2314
MspA1I	CMGCKG	1 cut(s)	3058
MspCI	CTTAAG	2 cut(s)	232, 2047
MspI	CCGG	6 cut(s)	255, 1005, 1850, 2137, 2448, 2720
MspR9I	CCNGG	7 cut(s)	729, 908, 1825, 1851, 2367, 2418, 2907
MunI	CAATTG	3 cut(s)	1040, 2438, 2771
Mva1269I	GAATGC	2 cut(s)	166, 2747
MvaI	CCWGG	6 cut(s)	729, 908, 1825, 2367, 2418, 2907
MwoI	GCNNNNNNNGC	2 cut(s)	198, 1771
NciI	CCSGG	1 cut(s)	1851
NlaIII	CATG	9 cut(s)	511, 634, 665, 1772, 2398, 2915, 2958, 3037, 3092
NlaIV	GGNNCC	7 cut(s)	587, 868, 1102, 1318, 1855, 2004, 2853
NmuCI	GTSAC	3 cut(s)	193, 2479, 2979
NspI	RCATGY	5 cut(s)	511, 634, 2958, 3037, 3092
NspV	TTCGAA	1 cut(s)	2829
PagI	TCATGA	1 cut(s)	661
PasI	CCCWGGG	1 cut(s)	2417
PciI	ACATGT	3 cut(s)	507, 2954, 3088
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	2 cut(s)	166, 2747
PdmI	GAANNNNTTC	4 cut(s)	1832, 1869, 2211, 2896
PfeI	GAWTC	4 cut(s)	732, 1700, 1937, 2755
PflMI	CCANNNNNTGG	3 cut(s)	890, 1167, 1383
PfoI	TCCNGGA	2 cut(s)	1823, 2905
PkrI	GCNGC	3 cut(s)	203, 239, 2821
PleI	GAGTC	5 cut(s)	585, 673, 774, 2673, 2683
PpsI	GAGTC	5 cut(s)	585, 673, 774, 2673, 2683
PscI	ACATGT	3 cut(s)	507, 2954, 3088
PshBI	ATTAAT	2 cut(s)	1155, 1722
Psp6I	CCWGG	6 cut(s)	727, 906, 1823, 2365, 2416, 2905
PspEI	GGTNACC	1 cut(s)	1739
PspFI	CCCAGC	3 cut(s)	61, 1231, 1447
PspGI	CCWGG	6 cut(s)	727, 906, 1823, 2365, 2416, 2905
PspN4I	GGNNCC	7 cut(s)	587, 868, 1102, 1318, 1855, 2004, 2853
PspPI	GGNCC	9 cut(s)	653, 1007, 1101, 1317, 1511, 1556, 1606, 2683, 2852
PstI	CTGCAG	1 cut(s)	2869
PstNI	CAGNNNCTG	1 cut(s)	907
PsuI	RGATCY	7 cut(s)	807, 893, 910, 1205, 1421, 1486, 1876
PvuII	CAGCTG	1 cut(s)	3058
RsaI	GTAC	9 cut(s)	169, 905, 1150, 1366, 1848, 1855, 2040, 2364, 3099
RsaNI	GTAC	9 cut(s)	168, 904, 1149, 1365, 1847, 1854, 2039, 2363, 3098
RseI	CAYNNNNRTG	1 cut(s)	3093
Rsr2I	CGGWCCG	1 cut(s)	1007
RsrII	CGGWCCG	1 cut(s)	1007
SatI	GCNGC	3 cut(s)	202, 238, 2820
Sau96I	GGNCC	9 cut(s)	653, 1007, 1101, 1317, 1511, 1556, 1606, 2683, 2852
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	5 cut(s)	586, 674, 775, 2674, 2684
ScrFI	CCNGG	7 cut(s)	729, 908, 1825, 1851, 2367, 2418, 2907
SduI	GDGCHC	1 cut(s)	2800
SfaNI	GCATC	5 cut(s)	132, 1244, 1460, 2401, 2806
SfcI	CTRYAG	1 cut(s)	2865
SfuI	TTCGAA	1 cut(s)	2829
SinI	GGWCC	5 cut(s)	1007, 1511, 1556, 1606, 2683
SmiMI	CAYNNNNRTG	1 cut(s)	3093
SmlI	CTYRAG	8 cut(s)	232, 376, 439, 625, 763, 1961, 2047, 2662
SmoI	CTYRAG	8 cut(s)	232, 376, 439, 625, 763, 1961, 2047, 2662
SsiI	CCGC	6 cut(s)	314, 354, 780, 918, 2706, 2793
SspMI	CTAG	7 cut(s)	1484, 1697, 1706, 1736, 1814, 2108, 2672
StyD4I	CCNGG	7 cut(s)	727, 906, 1823, 1849, 2365, 2416, 2905
StyI	CCWWGG	3 cut(s)	487, 884, 2679
TaaI	ACNGT	6 cut(s)	473, 716, 760, 1798, 2002, 2479
TaiI	ACGT	1 cut(s)	3121
TaqI	TCGA	8 cut(s)	426, 1055, 1218, 1434, 1589, 1907, 2690, 2829
TaqII	GACCGA	1 cut(s)	1024
TatI	WGTACW	2 cut(s)	167, 3097
TfiI	GAWTC	4 cut(s)	732, 1700, 1937, 2755
TscAI	CASTG	8 cut(s)	47, 83, 587, 1102, 1318, 1388, 1927, 2122
TseFI	GTSAC	3 cut(s)	193, 2479, 2979
TseI	GCWGC	3 cut(s)	201, 237, 2819
Tsp45I	GTSAC	3 cut(s)	193, 2479, 2979
TspDTI	ATGAA	9 cut(s)	17, 278, 650, 1108, 1324, 1703, 1742, 1757, 2518
TspGWI	ACGGA	3 cut(s)	595, 1077, 1790
TspRI	CASTG	8 cut(s)	47, 83, 587, 1102, 1318, 1388, 1927, 2122
Van91I	CCANNNNNTGG	3 cut(s)	890, 1167, 1383
Vha464I	CTTAAG	2 cut(s)	232, 2047
VpaK11BI	GGWCC	5 cut(s)	1007, 1511, 1556, 1606, 2683
VspI	ATTAAT	2 cut(s)	1155, 1722
XapI	RAATTY	8 cut(s)	388, 417, 499, 878, 926, 946, 1524, 2270
XbaI	TCTAGA	4 cut(s)	1483, 1705, 1813, 2107
XceI	RCATGY	5 cut(s)	511, 634, 2958, 3037, 3092
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2903
XmnI	GAANNNNTTC	4 cut(s)	1832, 1869, 2211, 2896
XspI	CTAG	7 cut(s)	1484, 1697, 1706, 1736, 1814, 2108, 2672
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.