Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003820

Physical Location & Seq

Genomic Coordinates Forward (+)

13394053 .. 13395901

Gene Structure 1849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCTAACTCGATTGAGGAGGCCGGGGGGAAGAAGGAGATTATGGTGGAGGCGGAGGGGAAGAGGGATAGGTCATTGTTGGATGTGTTTAAGTCGAAAGAGGAGGTGAAGGAGGAGGTTGAGAAGGAGGCAAAGGAGACTAAGACGGAGGAGTCGTTGTTAGACAAGGCAAAGAACTATGTGGCAGAGAAGATAGCAAATGTGCCAACACCAGAGGCAAGTCTGATCGATGTTGATTTCTTGAAGGTGAGCTTTGATTCTGCAGATTACCTTGCCAAGGTTAACGTCAAGAATCCCTATTCACATTCCATCCCCATCTGCGAGATCGATTACACCCTCAAAAGCATTGGCAGTGTGATCGCTTCCGGGAGGATTCCAGACCCTGGATCGTTGAAGGCGAGCCGCGATACTCTCATCGATGTGCCGGTGAAGGTGCCACACAGTATAATAATTACTTTGGTTAAGGACATTGCTACAGATTGGGACATTGACTATGAGTTGGAACTGGGACTCATCATCGACATTCCTATAGTTGGGAACATTACCATACCACTATCCAGGAAAGGTGAGATCAAGCTTCCCACCTTAAAGGATGTAATATTTGGAACAAATGAGGAGCAGAAGGATTCGAAAGAGAAAGAGAAAGAGAAGGATTCCAAAGAAAAAGATAAGGATTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

228

Amino Acids

25.26

Weight (kDa)

4.83

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	93 - 189	5.7e-22	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01470 AT2G46140
fragaria_vesca	FvH4_4g03320 FvH4_7g15440 FvH4_7g15460
malus_domestica	MD01G1071800.v1.1 MD01G1071900.v1.1 MD07G1130800.v1.1 MD07G1130900.v1.1
prunus_persica	Prupe.2G178000_v2.0.a1 Prupe.2G178100_v2.0.a1 Prupe.2G178200_v2.0.a1
pyrus_communis	pycom01g10090 pycom01g10110 pycom07g12790 pycom07g12800
rosa_chinensis	RchiOBHm_Chr1g0357761 RchiOBHm_Chr1g0357771
rosa_laevigata	RLG00000027998 RLG00000027999
rosa_multiflora	Rmu_ssc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_4G00298530
rosa_rugosa	Rorug01G0258400 Rorug01G0258500
rosa_samantha	Rh1AG272300 Rh1AG272400 Rh1BG239500 Rh1BG239600 Rh1CG256200 Rh1CG256300 Rh1DG267800 Rh1DG267900
rosa_wichuraiana	Rw1G024300 Rw1G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	433
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccII	CGCG	1 cut(s)	405
AciI	CCGC	2 cut(s)	53, 403
AclWI	GGATC	1 cut(s)	394
AfiI	CCNNNNNNNGG	3 cut(s)	277, 383, 533
AgsI	TTSAA	2 cut(s)	244, 394
AjnI	CCWGG	2 cut(s)	382, 557
AluBI	AGCT	2 cut(s)	252, 577
AluI	AGCT	2 cut(s)	252, 577
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	1 cut(s)	21
AsuC2I	CCSGG	2 cut(s)	25, 367
AsuHPI	GGTGA	4 cut(s)	118, 259, 439, 578
AsuII	TTCGAA	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	433
BccI	CCATC	2 cut(s)	317, 323
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	2 cut(s)	384, 559
BcnI	CCSGG	2 cut(s)	25, 367
BcoDI	GTCTC	1 cut(s)	131
BfmI	CTRYAG	3 cut(s)	261, 474, 528
BisI	GCNGC	1 cut(s)	403
BlsI	GCNGC	1 cut(s)	404
Bme1390I	CCNGG	4 cut(s)	25, 367, 384, 559
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	4 cut(s)	25, 367, 384, 559
BmrI	ACTGGG	1 cut(s)	515
BmuI	ACTGGG	1 cut(s)	515
Bpu14I	TTCGAA	1 cut(s)	629
BpuMI	CCSGG	2 cut(s)	25, 367
Bsa29I	ATCGAT	3 cut(s)	228, 327, 417
BsaJI	CCNNGG	3 cut(s)	24, 276, 382
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 143, 170, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 383, 533
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	510
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	384, 559
BseCI	ATCGAT	3 cut(s)	228, 327, 417
BseDI	CCNNGG	3 cut(s)	24, 276, 382
BseGI	GGATG	3 cut(s)	88, 309, 598
BseLI	CCNNNNNNNGG	3 cut(s)	277, 383, 533
BseMI	GCAATG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	5 cut(s)	32, 116, 128, 164, 629
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	433
BshVI	ATCGAT	3 cut(s)	228, 327, 417
BsiSI	CCGG	3 cut(s)	24, 366, 425
BslFI	GGGAC	2 cut(s)	497, 522
BslI	CCNNNNNNNGG	3 cut(s)	277, 383, 533
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	497, 522
BsnI	GGCC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	629
Bsp143I	GATC	5 cut(s)	225, 324, 357, 386, 570
BspACI	CCGC	2 cut(s)	53, 403
BspANI	GGCC	1 cut(s)	23
BspDI	ATCGAT	3 cut(s)	228, 327, 417
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	394
BspT104I	TTCGAA	1 cut(s)	629
BspT107I	GGYRCC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	510
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	3 cut(s)	24, 276, 382
BssMI	GATC	5 cut(s)	225, 324, 357, 386, 570
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	384, 559
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	88, 309, 598
BstFNI	CGCG	1 cut(s)	405
BstKTI	GATC	5 cut(s)	228, 327, 360, 389, 573
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	5 cut(s)	225, 324, 357, 386, 570
BstNI	CCWGG	2 cut(s)	384, 559
BstSCI	CCNGG	4 cut(s)	23, 365, 382, 557
BstSFI	CTRYAG	3 cut(s)	261, 474, 528
BstUI	CGCG	1 cut(s)	405
Bsu15I	ATCGAT	3 cut(s)	228, 327, 417
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	3 cut(s)	228, 327, 417
BtsCI	GGATG	3 cut(s)	88, 309, 598
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	400
CaiI	CAGNNNCTG	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	424
ClaI	ATCGAT	3 cut(s)	228, 327, 417
CviJI	RGCY	4 cut(s)	23, 252, 402, 577
CviKI_1	RGCY	4 cut(s)	23, 252, 402, 577
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	5 cut(s)	227, 326, 359, 388, 572
DpnII	GATC	5 cut(s)	225, 324, 357, 386, 570
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	276
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	382, 557
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaiI	YATR	6 cut(s)	44, 180, 446, 495, 530, 548
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	2 cut(s)	497, 522
Fnu4HI	GCNGC	1 cut(s)	403
FokI	GGATG	3 cut(s)	95, 296, 605
Fsp4HI	GCNGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	403
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	3 cut(s)	24, 366, 425
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	8 cut(s)	152, 257, 292, 373, 510, 626, 653, 674
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	3 cut(s)	24, 366, 425
HphI	GGTGA	4 cut(s)	118, 259, 439, 578
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	225, 679
Hpy188III	TCNNGA	3 cut(s)	241, 289, 377
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	8 cut(s)	28, 103, 118, 238, 388, 424, 616, 643
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	225, 324, 357, 386, 570
LmnI	GCTCC	1 cut(s)	616
MaeII	ACGT	1 cut(s)	285
MalI	GATC	5 cut(s)	227, 326, 359, 388, 572
MboI	GATC	5 cut(s)	225, 324, 357, 386, 570
MboII	GAAGA	3 cut(s)	43, 73, 202
MluCI	AATT	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	161, 504
MmeI	TCCRAC	2 cut(s)	60, 480
MseI	TTAA	4 cut(s)	90, 282, 462, 587
MslI	CAYNNNNRTG	1 cut(s)	419
MspI	CCGG	3 cut(s)	24, 366, 425
MspR9I	CCNGG	4 cut(s)	25, 367, 384, 559
MvaI	CCWGG	2 cut(s)	384, 559
MvnI	CGCG	1 cut(s)	405
NciI	CCSGG	2 cut(s)	25, 367
NdeII	GATC	5 cut(s)	225, 324, 357, 386, 570
NlaIV	GGNNCC	1 cut(s)	435
NspV	TTCGAA	1 cut(s)	629
PcsI	WCGNNNNNNNCGW	2 cut(s)	152, 395
PfeI	GAWTC	6 cut(s)	257, 292, 373, 626, 653, 674
PflMI	CCANNNNNTGG	1 cut(s)	383
PfoI	TCCNGGA	2 cut(s)	365, 557
PkrI	GCNGC	1 cut(s)	404
PleI	GAGTC	2 cut(s)	160, 504
PpsI	GAGTC	2 cut(s)	160, 504
Psp6I	CCWGG	2 cut(s)	382, 557
PspGI	CCWGG	2 cut(s)	382, 557
PspN4I	GGNNCC	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	4 cut(s)	90, 282, 462, 587
SatI	GCNGC	1 cut(s)	403
Sau3AI	GATC	5 cut(s)	225, 324, 357, 386, 570
SchI	GAGTC	2 cut(s)	161, 504
ScrFI	CCNGG	4 cut(s)	25, 367, 384, 559
SfcI	CTRYAG	3 cut(s)	261, 474, 528
SfuI	TTCGAA	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	2 cut(s)	53, 403
SspI	AATATT	1 cut(s)	600
StyD4I	CCNGG	4 cut(s)	23, 365, 382, 557
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	7 cut(s)	11, 95, 228, 327, 417, 519, 629
TasI	AATT	1 cut(s)	450
TauI	GCSGC	1 cut(s)	405
TfiI	GAWTC	6 cut(s)	257, 292, 373, 626, 653, 674
Tru1I	TTAA	4 cut(s)	90, 282, 462, 587
Tru9I	TTAA	4 cut(s)	90, 282, 462, 587
TscAI	CASTG	1 cut(s)	358
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.