AT2G46140

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003820
Physical Location & Seq
Forward (+)
18958999 .. 18960645
1647 bp
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UTR
Exon/CDS
Intron
AT2G46140.1

Sequence Viewer

Length: 501 bp
ATGGCATCAGCGGATGAAAAGGTGGTGGAAGAGAAGGCTTCGGTGATTTCAAGCTTGTTGGACAAAGCCAAAGGTTTCTTTGCGGAGAAGCTGGCGAATATTCCGACGCCGGAAGCAACCGTGGACGACGTTGATTTCAAAGGCGTGACACGTGATGGAGTAGATTATCACGCCAAGGTCTCCGTCAAGAATCCTTACTCTCAATCCATCCCTATCTGCCAGATCTCTTACATCCTCAAGAGTGCCACAAGGACGATCGCGTCAGGCACGATACCGGACCCGGGTTCGTTGGTTGGGAGCGGCACGACGGTTCTGGACGTACCGGTTAAGGTGGCTTATAGCATAGCGGTTAGTCTGATGAAGGATATGTGTACGGACTGGGACATTGACTATCAACTAGACATTGGGCTAACCTTCGACATTCCTGTTGTTGGTGATATCACCATTCCTGTCTCTACTCAGGGAGAGATCAAGCTCCCTTCCCTTCGCGACTTCTTTTAA

Protein Analysis

166

Amino Acids

17.85

Weight (kDa)

4.53

Isoelectric Point (pI)

20.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 59 - 155 1.8e-23 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 300
AccII CGCG 2 cut(s) 260, 489
AciI CCGC 4 cut(s) 11, 83, 300, 347
AcvI CACGTG 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 321, 373
AfiI CCNNNNNNNGG 2 cut(s) 281, 431
AflIII ACRYGT 1 cut(s) 149
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 51, 139
AluBI AGCT 3 cut(s) 54, 91, 475
AluI AGCT 3 cut(s) 54, 91, 475
Alw26I GTCTC 2 cut(s) 184, 457
Ama87I CYCGRG 1 cut(s) 280
AsiGI ACCGGT 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 2 cut(s) 281, 282
AsuHPI GGTGA 3 cut(s) 55, 433, 446
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 1 cut(s) 277
BbrPI CACGTG 1 cut(s) 152
BccI CCATC 2 cut(s) 149, 215
BcnI CCSGG 2 cut(s) 281, 282
BcoDI GTCTC 2 cut(s) 184, 457
BfaI CTAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 222
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 281, 282
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 2 cut(s) 281, 282
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 2 cut(s) 281, 282
BsaAI YACGTR 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 3 cut(s) 120, 174, 280
BsaWI WCCGGW 2 cut(s) 274, 322
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 431
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 383
BseDI CCNNGG 3 cut(s) 120, 174, 280
BseGI GGATG 3 cut(s) 19, 207, 231
BseLI CCNNNNNNNGG 2 cut(s) 281, 431
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 383
Bsh1236I CGCG 2 cut(s) 260, 489
Bsh1285I CGRYCG 1 cut(s) 258
BshTI ACCGGT 1 cut(s) 322
BsiEI CGRYCG 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 4 cut(s) 110, 275, 281, 323
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 281, 431
BsmAI GTCTC 2 cut(s) 184, 457
BsmFI GGGAC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 280
Bsp143I GATC 3 cut(s) 222, 255, 468
Bsp68I TCGCGA 1 cut(s) 489
BspACI CCGC 4 cut(s) 11, 83, 300, 347
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 2 cut(s) 260, 489
BspLI GGNNCC 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 3 cut(s) 120, 174, 280
BssMI GATC 3 cut(s) 222, 255, 468
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 121, 310
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 459
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 3 cut(s) 19, 207, 231
BstFNI CGCG 2 cut(s) 260, 489
BstKTI GATC 3 cut(s) 225, 258, 471
BstMAI GTCTC 2 cut(s) 184, 457
BstMBI GATC 3 cut(s) 222, 255, 468
BstMCI CGRYCG 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 279, 280
BstUI CGCG 2 cut(s) 260, 489
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 3 cut(s) 19, 207, 231
BtuMI TCGCGA 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 277
Cfr9I CCCGGG 1 cut(s) 280
CseI GACGC 2 cut(s) 115, 249
Csp6I GTAC 2 cut(s) 320, 372
CspAI ACCGGT 1 cut(s) 322
CviJI RGCY 7 cut(s) 38, 54, 68, 91, 335, 409, 475
CviKI_1 RGCY 7 cut(s) 38, 54, 68, 91, 335, 409, 475
CviQI GTAC 2 cut(s) 320, 372
DdeI CTNAG 1 cut(s) 459
DpnI GATC 3 cut(s) 224, 257, 470
DpnII GATC 3 cut(s) 222, 255, 468
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 184
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 277
Eco72I CACGTG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaiI YATR 3 cut(s) 339, 344, 368
FaqI GGGAC 1 cut(s) 395
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 3 cut(s) 26, 194, 218
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 1 cut(s) 398
GluI GCNGC 1 cut(s) 301
HapII CCGG 4 cut(s) 110, 275, 281, 323
HgaI GACGC 2 cut(s) 115, 249
Hin1I GRCGYC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 1 cut(s) 190
HpaII CCGG 4 cut(s) 110, 275, 281, 323
HphI GGTGA 3 cut(s) 55, 433, 446
Hpy166II GTNNAC 2 cut(s) 124, 372
Hpy188I TCNGA 2 cut(s) 105, 357
Hpy188III TCNNGA 4 cut(s) 187, 238, 314, 488
Hpy8I GTNNAC 2 cut(s) 124, 372
Hpy99I CGWCG 3 cut(s) 109, 131, 310
HpyAV CCTTC 5 cut(s) 28, 355, 424, 489, 494
HpyCH4III ACNGT 2 cut(s) 121, 310
HpyCH4IV ACGT 3 cut(s) 129, 151, 318
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 3 cut(s) 129, 151, 318
Hsp92I GRCGYC 1 cut(s) 107
Kzo9I GATC 3 cut(s) 222, 255, 468
LmnI GCTCC 2 cut(s) 297, 480
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 398
MaeII ACGT 3 cut(s) 129, 151, 318
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 224, 257, 470
MbiI CCGCTC 1 cut(s) 300
MboI GATC 3 cut(s) 222, 255, 468
MboII GAAGA 1 cut(s) 41
MflI RGATCY 1 cut(s) 222
MmeI TCCRAC 2 cut(s) 39, 128
MnlI CCTC 1 cut(s) 245
MseI TTAA 2 cut(s) 327, 499
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 4 cut(s) 110, 275, 281, 323
MspR9I CCNGG 2 cut(s) 281, 282
MvnI CGCG 2 cut(s) 260, 489
NciI CCSGG 2 cut(s) 281, 282
NdeII GATC 3 cut(s) 222, 255, 468
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 145
NruI TCGCGA 1 cut(s) 489
PfeI GAWTC 1 cut(s) 190
PinAI ACCGGT 1 cut(s) 322
PkrI GCNGC 1 cut(s) 302
Ple19I CGATCG 1 cut(s) 258
PmaCI CACGTG 1 cut(s) 152
PmlI CACGTG 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 152
PspCI CACGTG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 277
PsuI RGATCY 1 cut(s) 222
PvuI CGATCG 1 cut(s) 258
RruI TCGCGA 1 cut(s) 489
RsaI GTAC 2 cut(s) 321, 373
RsaNI GTAC 2 cut(s) 320, 372
SaqAI TTAA 2 cut(s) 327, 499
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 3 cut(s) 222, 255, 468
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 2 cut(s) 281, 282
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 1 cut(s) 277
SmaI CCCGGG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SsiI CCGC 4 cut(s) 11, 83, 300, 347
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 2 cut(s) 279, 280
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 121, 310
TaiI ACGT 3 cut(s) 132, 154, 321
TaqI TCGA 1 cut(s) 417
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 2 cut(s) 327, 499
Tru9I TTAA 2 cut(s) 327, 499
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 30, 374
TspGWI ACGGA 2 cut(s) 172, 389
TspMI CCCGGG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 277
XmaI CCCGGG 1 cut(s) 280
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.