Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Reverse (-)

959790 .. 960916

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTTCTTTTGCTCTGAAACCCATTTTTTGTTTCATTGCTGTTTTTTGCTTCATCGTCCACAATGTTGAAGCTAGAGAGGGTAAGCTCTTCTTTAGCAAGTTCACTCACATAGATCGTCCTAACAACAAAGATGTCGCTCTATCTCCAGCTCCAGCTCCCGGACTAGCCCAAGCTAATGGAAGACTCGGAAATGGGTCTTTCGGGCCTGGTTCCGGTATGATTCCTCAAACCAAAGAGTCATGGCCAAGTTCATCCACTACAACAGACGAAGAGTTTGAGAAATTGATGGCTACATTTGACGAAGAAAAGAATACCAAGTTACCCGAGGCATTCGAGGAAGAAGAAGAATCTGAAGATTCGGAAGATCTCAATGAGCCAAAGGATAAGTACAACAACAACAACAACAATAATGGATACACTTACACTACTAACAATTATAATGACAATGGGAGAGGTTACGGTAATGAAGAAGAGAAGCAGGGGATGAGTGACACAAGGGTTATGGAGAACGGTAAGTATTTCTACGACACAAGAGGTAGGAATTCAGAAAACACCCCTAGTCGCGGGTATGAGAATGCTCGAGGAAATGATCATACCAACGAGTTTGAAACTATGGAGGAATACTACAAGAGCTTGGAGGGTAGTCAAGAAGAGTATGAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

25.2

Weight (kDa)

4.52

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccII	CGCG	1 cut(s)	567
AciI	CCGC	1 cut(s)	567
AcoI	YGGCCR	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	161, 215, 566
AgsI	TTSAA	2 cut(s)	71, 611
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	6 cut(s)	74, 88, 152, 158, 176, 636
AluI	AGCT	6 cut(s)	74, 88, 152, 158, 176, 636
Ama87I	CYCGRG	2 cut(s)	326, 582
AoxI	GGCC	2 cut(s)	206, 245
ApoI	RAATTY	1 cut(s)	544
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	162
AvaI	CYCGRG	2 cut(s)	326, 582
BalI	TGGCCA	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	190
BccI	CCATC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	210
BciVI	GTATCC	1 cut(s)	410
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	162
BfaI	CTAG	3 cut(s)	75, 167, 561
BfuI	GTATCC	1 cut(s)	410
BglII	AGATCT	1 cut(s)	367
Bme1390I	CCNGG	2 cut(s)	162, 210
BmeT110I	CYCGRG	2 cut(s)	326, 582
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	2 cut(s)	162, 210
BpiI	GAAGAC	1 cut(s)	190
BpmI	CTGGAG	2 cut(s)	132, 138
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 215, 566
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	2 cut(s)	254, 492
BseLI	CCNNNNNNNGG	3 cut(s)	161, 215, 566
BseMI	GCAATG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	208, 247
BsiHKCI	CYCGRG	2 cut(s)	326, 582
BsiSI	CCGG	2 cut(s)	162, 216
BslI	CCNNNNNNNGG	3 cut(s)	161, 215, 566
BsmI	GAATGC	2 cut(s)	332, 583
BsnI	GGCC	2 cut(s)	208, 247
BsoBI	CYCGRG	2 cut(s)	326, 582
Bsp143I	GATC	3 cut(s)	115, 367, 592
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	2 cut(s)	208, 247
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	3 cut(s)	115, 367, 592
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	464, 515
Bst6I	CTCTTC	4 cut(s)	95, 267, 468, 648
BstDEI	CTNAG	1 cut(s)	666
BstF5I	GGATG	2 cut(s)	254, 492
BstFNI	CGCG	1 cut(s)	567
BstKTI	GATC	3 cut(s)	118, 370, 595
BstMBI	GATC	3 cut(s)	115, 367, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	2 cut(s)	160, 208
BstUI	CGCG	1 cut(s)	567
BstV2I	GAAGAC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	208, 247
BtsCI	GGATG	2 cut(s)	254, 492
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	1 cut(s)	243
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	666
DpnI	GATC	3 cut(s)	117, 369, 594
DpnII	GATC	3 cut(s)	115, 367, 592
EaeI	YGGCCR	1 cut(s)	245
Eam1104I	CTCTTC	4 cut(s)	95, 267, 468, 648
EarI	CTCTTC	4 cut(s)	95, 267, 468, 648
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	2 cut(s)	326, 582
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	208
FaeI	CATG	1 cut(s)	246
FaiI	YATR	9 cut(s)	113, 221, 244, 441, 506, 573, 597, 617, 660
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	1 cut(s)	242
FauI	CCCGC	1 cut(s)	560
FbaI	TGATCA	1 cut(s)	592
FokI	GGATG	2 cut(s)	241, 499
FspBI	CTAG	3 cut(s)	75, 167, 561
GsuI	CTGGAG	2 cut(s)	132, 138
HaeIII	GGCC	2 cut(s)	208, 247
HapII	CCGG	2 cut(s)	162, 216
Hin1II	CATG	1 cut(s)	246
HinfI	GANTC	5 cut(s)	186, 223, 239, 350, 359
HpaII	CCGG	2 cut(s)	162, 216
Hpy166II	GTNNAC	2 cut(s)	61, 105
Hpy188I	TCNGA	5 cut(s)	18, 191, 355, 364, 550
Hpy188III	TCNNGA	1 cut(s)	650
Hpy8I	GTNNAC	2 cut(s)	61, 105
HpyCH4III	ACNGT	2 cut(s)	464, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	666
Hsp92II	CATG	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	115, 367, 592
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	157, 163
LpnPI	CCDG	7 cut(s)	162, 168, 175, 195, 222, 229, 467
MaeI	CTAG	3 cut(s)	75, 167, 561
MaeIII	GTNAC	3 cut(s)	321, 458, 491
MalI	GATC	3 cut(s)	117, 369, 594
MboI	GATC	3 cut(s)	115, 367, 592
MflI	RGATCY	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	247
MluCI	AATT	3 cut(s)	284, 436, 544
MluNI	TGGCCA	1 cut(s)	247
MlyI	GAGTC	2 cut(s)	180, 248
MnlI	CCTC	9 cut(s)	73, 237, 322, 331, 449, 530, 578, 613, 634
Mox20I	TGGCCA	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	247
Msp20I	TGGCCA	1 cut(s)	247
MspI	CCGG	2 cut(s)	162, 216
MspR9I	CCNGG	2 cut(s)	162, 210
Mva1269I	GAATGC	2 cut(s)	332, 583
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	3 cut(s)	115, 367, 592
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	491
PaeR7I	CTCGAG	1 cut(s)	582
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	2 cut(s)	332, 583
PfeI	GAWTC	3 cut(s)	223, 350, 359
PfoI	TCCNGGA	1 cut(s)	160
PleI	GAGTC	2 cut(s)	180, 247
PpsI	GAGTC	2 cut(s)	180, 247
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	206
PspXI	VCTCGAGB	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SapI	GCTCTTC	1 cut(s)	95
Sau3AI	GATC	3 cut(s)	115, 367, 592
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	2 cut(s)	180, 248
ScrFI	CCNGG	2 cut(s)	162, 210
SetI	ASST	8 cut(s)	76, 90, 154, 160, 178, 460, 541, 638
Sfr274I	CTCGAG	1 cut(s)	582
SlaI	CTCGAG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	3 cut(s)	284, 436, 544
SsiI	CCGC	1 cut(s)	567
SspMI	CTAG	3 cut(s)	75, 167, 561
StyD4I	CCNGG	2 cut(s)	160, 208
TaaI	ACNGT	2 cut(s)	464, 515
TaqI	TCGA	2 cut(s)	336, 583
TasI	AATT	3 cut(s)	284, 436, 544
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	3 cut(s)	223, 350, 359
TseFI	GTSAC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	4 cut(s)	25, 43, 243, 483
XapI	RAATTY	1 cut(s)	544
XhoI	CTCGAG	1 cut(s)	582
XspI	CTAG	3 cut(s)	75, 167, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.