Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Reverse (-)

49619998 .. 49621104

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG354400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACTTCCTCTGCAAAAGCTCTCCCATTTTTCTTTCTTCTAGTGCTTTTCTCTTCTCTTCAAGTTGAAGCTAGACAGAGATTTTTCTTCAGCAAAGTCACCCACAGTAATGGGAATGAGCCCCAGATACCGGTCACAGAAGATCCAGCAACACCAACACCATCATATGCACCCACATATACACCAACATATTCACCATTATATGGACCAACATATGCACCAGCACCAGAATTAACAGTAGCAGAGTCACCAGAAGGAGGAGCACCAGTACTTGTACCAGCACCGGCACCGTTTGATTCTGAACCAGAGTTCGGCTATGAGCTATATGGTTCTGCCGATCAGGAGACACCAACCACCATTGATGTCCAAAATGAAGTTGCAACTCAAGAAAATGGTCATTATGAAAATACCAACTTGTACAACGACAACAGTAAGTACGCGACCAATTACAACAGCGATGGATACACCACCAACTACATCAATGGCAGAGAAGGCTTTACCAACAGCTATTACAGTAATGGCAATGGAAACAGCGTTGATGGGTTTGAACAGCAAGGGATGAGTGACACAAGGTTTATGGAAAATGGAAGCTACTATCAGGACAATGACGTGAAGAATGAGAATAATGACAAGTTGAATGGGTACCAGTCCGGGAGAGGAAGCACTACAAATGAAGCGTATTTTGGTAACAGTGAGAAGCCTAATGAGTTCAACACCATGGAGGAGTATGAGAAGTACCAGGAGAACCAAGGATATGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.3

Weight (kDa)

4.15

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	642
AccB1I	GGYRCC	2 cut(s)	286, 642
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccII	CGCG	1 cut(s)	440
AclWI	GGATC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	6 cut(s)	270, 276, 419, 437, 644, 737
AfiI	CCNNNNNNNGG	4 cut(s)	130, 203, 257, 311
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	5 cut(s)	62, 68, 548, 637, 712
AjiI	CACGTC	1 cut(s)	610
AjnI	CCWGG	1 cut(s)	738
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	5 cut(s)	20, 71, 322, 507, 591
AluI	AGCT	5 cut(s)	20, 71, 322, 507, 591
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	137
AsiGI	ACCGGT	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	3 cut(s)	91, 186, 240
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	2 cut(s)	286, 642
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	265
BccI	CCATC	3 cut(s)	169, 452, 533
BciT130I	CCWGG	1 cut(s)	740
BciVI	GTATCC	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	2 cut(s)	41, 72
BfuI	GTATCC	1 cut(s)	455
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	652, 740
Bme18I	GGWCC	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	610
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	288, 644
BmrFI	CCNGG	2 cut(s)	652, 740
BpuEI	CTTGAG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	652
BsaJI	CCNNGG	2 cut(s)	717, 748
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 203, 257, 311
Bse118I	RCCGGY	2 cut(s)	130, 283
Bse1I	ACTGG	2 cut(s)	266, 646
Bse3DI	GCAATG	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	2 cut(s)	717, 748
BseGI	GGATG	1 cut(s)	564
BseLI	CCNNNNNNNGG	4 cut(s)	130, 203, 257, 311
BseMI	GCAATG	1 cut(s)	529
BseNI	ACTGG	2 cut(s)	266, 646
BseRI	GAGGAG	2 cut(s)	273, 737
Bsh1236I	CGCG	1 cut(s)	440
BshNI	GGYRCC	2 cut(s)	286, 642
BshTI	ACCGGT	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	3 cut(s)	131, 284, 651
BslI	CCNNNNNNNGG	4 cut(s)	130, 203, 257, 311
BsmAI	GTCTC	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	123, 265
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	142, 337
Bsp19I	CCATGG	1 cut(s)	717
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	2 cut(s)	288, 644
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	2 cut(s)	286, 642
BsrDI	GCAATG	1 cut(s)	529
BsrFI	RCCGGY	2 cut(s)	130, 283
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	266, 646
BssAI	RCCGGY	2 cut(s)	130, 283
BssECI	CCNNGG	2 cut(s)	717, 748
BssMI	GATC	2 cut(s)	142, 337
BssT1I	CCWWGG	2 cut(s)	717, 748
Bst2UI	CCWGG	1 cut(s)	740
Bst4CI	ACNGT	6 cut(s)	107, 238, 291, 431, 515, 692
Bst6I	CTCTTC	2 cut(s)	58, 63
BstAUI	TGTACA	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	717
BstF5I	GGATG	1 cut(s)	564
BstFNI	CGCG	1 cut(s)	440
BstKTI	GATC	2 cut(s)	145, 340
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	2 cut(s)	142, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	492
BstNI	CCWGG	1 cut(s)	740
BstSCI	CCNGG	2 cut(s)	650, 738
BstUI	CGCG	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	455
BtgI	CCRYGG	1 cut(s)	717
BtgZI	GCGATG	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	610
BtsCI	GGATG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	697
Cfr10I	RCCGGY	2 cut(s)	130, 283
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	6 cut(s)	269, 275, 418, 436, 643, 736
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	1 cut(s)	718
CviJI	RGCY	9 cut(s)	20, 71, 121, 315, 322, 495, 507, 591, 700
CviKI_1	RGCY	9 cut(s)	20, 71, 121, 315, 322, 495, 507, 591, 700
CviQI	GTAC	6 cut(s)	269, 275, 418, 436, 643, 736
DpnI	GATC	2 cut(s)	144, 339
DpnII	GATC	2 cut(s)	142, 337
Eam1104I	CTCTTC	2 cut(s)	58, 63
EarI	CTCTTC	2 cut(s)	58, 63
Eco130I	CCWWGG	2 cut(s)	717, 748
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	738
EcoT14I	CCWWGG	2 cut(s)	717, 748
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	2 cut(s)	717, 748
FaeI	CATG	1 cut(s)	721
FatI	CATG	1 cut(s)	717
FauNDI	CATATG	2 cut(s)	166, 214
FokI	GGATG	1 cut(s)	571
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	41, 72
HapII	CCGG	3 cut(s)	131, 284, 651
Hin1II	CATG	1 cut(s)	721
HinfI	GANTC	2 cut(s)	245, 296
HpaII	CCGG	3 cut(s)	131, 284, 651
HphI	GGTGA	3 cut(s)	91, 186, 240
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	3 cut(s)	341, 386, 599
HpyAV	CCTTC	2 cut(s)	248, 485
HpyCH4III	ACNGT	6 cut(s)	107, 238, 291, 431, 515, 692
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	4 cut(s)	14, 170, 218, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	1 cut(s)	721
KpnI	GGTACC	1 cut(s)	646
Kzo9I	GATC	2 cut(s)	142, 337
LmnI	GCTCC	1 cut(s)	260
MaeI	CTAG	2 cut(s)	41, 72
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	5 cut(s)	97, 133, 246, 563, 686
MalI	GATC	2 cut(s)	144, 339
MboI	GATC	2 cut(s)	142, 337
MboII	GAAGA	6 cut(s)	29, 45, 50, 79, 152, 625
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	123, 265
MluCI	AATT	2 cut(s)	230, 445
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	4 cut(s)	19, 251, 650, 715
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	3 cut(s)	131, 284, 651
MspR9I	CCNGG	2 cut(s)	652, 740
MvaI	CCWGG	1 cut(s)	740
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	492
NciI	CCSGG	1 cut(s)	652
NcoI	CCATGG	1 cut(s)	717
NdeI	CATATG	2 cut(s)	166, 214
NdeII	GATC	2 cut(s)	142, 337
NlaIII	CATG	1 cut(s)	721
NlaIV	GGNNCC	2 cut(s)	288, 644
NmuCI	GTSAC	4 cut(s)	97, 133, 246, 563
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	650
PinAI	ACCGGT	1 cut(s)	130
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	738
PspGI	CCWGG	1 cut(s)	738
PspN4I	GGNNCC	2 cut(s)	288, 644
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	6 cut(s)	270, 276, 419, 437, 644, 737
RsaNI	GTAC	6 cut(s)	269, 275, 418, 436, 643, 736
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	142, 337
Sau96I	GGNCC	1 cut(s)	206
ScaI	AGTACT	1 cut(s)	270
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	652, 740
SduI	GDGCHC	2 cut(s)	123, 265
SetI	ASST	7 cut(s)	22, 73, 324, 509, 575, 593, 612
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	2 cut(s)	230, 445
SspMI	CTAG	2 cut(s)	41, 72
StyD4I	CCNGG	2 cut(s)	650, 738
StyI	CCWWGG	2 cut(s)	717, 748
TaaI	ACNGT	6 cut(s)	107, 238, 291, 431, 515, 692
TaiI	ACGT	1 cut(s)	612
TasI	AATT	2 cut(s)	230, 445
TatI	WGTACW	2 cut(s)	268, 417
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	697
TseFI	GTSAC	4 cut(s)	97, 133, 246, 563
Tsp45I	GTSAC	4 cut(s)	97, 133, 246, 563
TspDTI	ATGAA	3 cut(s)	387, 417, 687
TspRI	CASTG	1 cut(s)	697
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	206
XspI	CTAG	2 cut(s)	41, 72
ZrmI	AGTACT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.