Rh3DG169400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0006365
Physical Location & Seq
Forward (+)
14802041 .. 14802661
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG169400.1

Sequence Viewer

Length: 621 bp
ATGGCTTCCTTCGTGAAAACAATCTCATTTTTCATCCTTCTGGTGCTTTTCACCTCTCTGCAAATTGAAGCCAGCGACAGATTGTTCTTCAGCAAAGTTAGCGGTTCCAACAACAATTACAATGCCAAGGATCCCAAGATCCCCCTTAGTTACCAACAAGAGGCTAAACCTTCACCAGAAGTTGCGGCACTAACAACCCAGGCACAAAAAGTGGCTGTTGATCCACCAAAGAAACCAATGTTCACTCGCAACCAATATGAAAGCTTATTCGGTCCTACAGATGACACATCGGCTGCCATTGGTACCAGCTCAAACAGCGACAATGGCAAGAAAAACAACAAAAATGGGGATAACTTCATTTACAATACGGAAAGTGACTTCAATGGAAATGGCAATGGCGATGACAACATCGGGGATGAGATTAAGCAGCAAGGGCTCAGTGATACAAGGTTTTTGGAACATGGTCGCTACAGTAATGTTGATAAAAATAGGTTCAATGATAATGCACGGAGAGGAAGCGCTGGTAATGAGGGTTTTGATGGCAAGATCGGGAAGCAGAACCAGTTCGACTCCTTGGAGGAATATGAGAAGTACCTGCAGAGGACCGGATATCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.91

Weight (kDa)

5.31

Isoelectric Point (pI)

22.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 603
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AciI CCGC 2 cut(s) 102, 185
AclWI GGATC 4 cut(s) 125, 133, 138, 215
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 2 cut(s) 304, 593
AfeI AGCGCT 1 cut(s) 520
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 3 cut(s) 68, 382, 496
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 2 cut(s) 264, 309
AluI AGCT 2 cut(s) 264, 309
AlwI GGATC 4 cut(s) 125, 133, 138, 215
Aor51HI AGCGCT 1 cut(s) 520
ApeKI GCWGC 2 cut(s) 293, 427
Asp700I GAANNNNTTC 1 cut(s) 563
Asp718I GGTACC 1 cut(s) 302
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 2 cut(s) 272, 603
AsuHPI GGTGA 2 cut(s) 43, 165
AvaII GGWCC 2 cut(s) 272, 603
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 280, 439
BccI CCATC 1 cut(s) 533
BciT130I CCWGG 1 cut(s) 200
BfmI CTRYAG 3 cut(s) 276, 469, 596
BfoI RGCGCY 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 603
BisI GCNGC 3 cut(s) 186, 294, 428
BlsI GCNGC 3 cut(s) 187, 295, 429
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 2 cut(s) 272, 603
BmgT120I GGNCC 2 cut(s) 272, 603
BmiI GGNNCC 3 cut(s) 106, 132, 304
BmrFI CCNGG 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 126, 198, 573
BsaWI WCCGGW 1 cut(s) 605
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 562
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 126, 198, 573
BseGI GGATG 2 cut(s) 33, 421
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 562
BseXI GCAGC 2 cut(s) 280, 439
BshNI GGYRCC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 4 cut(s) 130, 138, 220, 546
BspACI CCGC 2 cut(s) 102, 185
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 106, 132, 304
BspMAI CTGCAG 1 cut(s) 600
BspMI ACCTGC 1 cut(s) 603
BspPI GGATC 4 cut(s) 125, 133, 138, 215
BspT107I GGYRCC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 400
BsrI ACTGG 1 cut(s) 562
BssECI CCNNGG 3 cut(s) 126, 198, 573
BssMI GATC 4 cut(s) 130, 138, 220, 546
BssT1I CCWWGG 2 cut(s) 126, 573
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 473
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 146, 437
BstF5I GGATG 2 cut(s) 33, 421
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 4 cut(s) 133, 141, 223, 549
BstMBI GATC 4 cut(s) 130, 138, 220, 546
BstMWI GCNNNNNNNGC 4 cut(s) 99, 315, 324, 433
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 3 cut(s) 276, 469, 596
BstV1I GCAGC 2 cut(s) 280, 439
BstX2I RGATCY 2 cut(s) 130, 138
BstYI RGATCY 2 cut(s) 130, 138
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 33, 421
BtsIMutI CAGTG 1 cut(s) 445
BveI ACCTGC 1 cut(s) 603
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 272, 603
Csp6I GTAC 2 cut(s) 303, 592
CviAII CATG 1 cut(s) 461
CviJI RGCY 8 cut(s) 5, 71, 164, 215, 264, 293, 309, 436
CviKI_1 RGCY 8 cut(s) 5, 71, 164, 215, 264, 293, 309, 436
CviQI GTAC 2 cut(s) 303, 592
DdeI CTNAG 2 cut(s) 146, 437
DpnI GATC 4 cut(s) 132, 140, 222, 548
DpnII GATC 4 cut(s) 130, 138, 220, 546
Eco130I CCWWGG 2 cut(s) 126, 573
Eco24I GRGCYC 1 cut(s) 438
Eco32I GATATC 1 cut(s) 611
Eco47I GGWCC 2 cut(s) 272, 603
Eco47III AGCGCT 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 611
EcoT14I CCWWGG 2 cut(s) 126, 573
EcoT38I GRGCYC 1 cut(s) 438
ErhI CCWWGG 2 cut(s) 126, 573
FaeI CATG 1 cut(s) 464
FaiI YATR 3 cut(s) 258, 462, 585
FatI CATG 1 cut(s) 460
Fnu4HI GCNGC 3 cut(s) 186, 294, 428
FokI GGATG 2 cut(s) 20, 428
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 3 cut(s) 186, 294, 428
GlaI GCGC 1 cut(s) 520
GluI GCNGC 3 cut(s) 186, 294, 428
HaeII RGCGCY 1 cut(s) 522
HapII CCGG 1 cut(s) 606
HhaI GCGC 1 cut(s) 521
Hin1II CATG 1 cut(s) 464
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 1 cut(s) 569
HpaII CCGG 1 cut(s) 606
HphI GGTGA 2 cut(s) 43, 165
Hpy166II GTNNAC 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 13, 550
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 3 cut(s) 19, 47, 180
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4V TGCA 3 cut(s) 61, 506, 598
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 315, 324, 433
HpyF3I CTNAG 2 cut(s) 146, 437
Hsp92II CATG 1 cut(s) 464
HspAI GCGC 1 cut(s) 519
KpnI GGTACC 1 cut(s) 306
Kzo9I GATC 4 cut(s) 130, 138, 220, 546
LpnPI CCDG 9 cut(s) 26, 85, 185, 189, 212, 319, 507, 575, 608
Lsp1109I GCAGC 2 cut(s) 280, 439
MaeIII GTNAC 2 cut(s) 149, 374
MalI GATC 4 cut(s) 132, 140, 222, 548
MboI GATC 4 cut(s) 130, 138, 220, 546
MboII GAAGA 2 cut(s) 79, 605
MflI RGATCY 2 cut(s) 130, 138
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 2 cut(s) 63, 115
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 6 cut(s) 64, 154, 506, 523, 571, 594
MroXI GAANNNNTTC 1 cut(s) 563
MseI TTAA 1 cut(s) 423
MspI CCGG 1 cut(s) 606
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 4 cut(s) 99, 315, 324, 433
NdeII GATC 4 cut(s) 130, 138, 220, 546
NlaIII CATG 1 cut(s) 464
NlaIV GGNNCC 3 cut(s) 106, 132, 304
NmuCI GTSAC 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 563
PkrI GCNGC 3 cut(s) 187, 295, 429
PleI GAGTC 1 cut(s) 563
PpsI GAGTC 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 106, 132, 304
PspPI GGNCC 2 cut(s) 272, 603
PstI CTGCAG 1 cut(s) 600
PsuI RGATCY 2 cut(s) 130, 138
RsaI GTAC 2 cut(s) 304, 593
RsaNI GTAC 2 cut(s) 303, 592
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 3 cut(s) 186, 294, 428
Sau3AI GATC 4 cut(s) 130, 138, 220, 546
Sau96I GGNCC 2 cut(s) 272, 603
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 438
SetI ASST 7 cut(s) 56, 172, 266, 311, 452, 494, 597
SfcI CTRYAG 3 cut(s) 276, 469, 596
SinI GGWCC 2 cut(s) 272, 603
Sse9I AATT 2 cut(s) 63, 115
SsiI CCGC 2 cut(s) 102, 185
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 126, 573
TaaI ACNGT 1 cut(s) 473
TaqI TCGA 1 cut(s) 567
TaqII GACCGA 1 cut(s) 260
TasI AATT 2 cut(s) 63, 115
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 2 cut(s) 293, 427
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 3 cut(s) 22, 273, 346
TspGWI ACGGA 2 cut(s) 383, 523
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 2 cut(s) 272, 603
XmnI GAANNNNTTC 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.