Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00191

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Reverse (-)

89082 .. 89702

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTTCCTTCGTGAAAACAATCTCATTTTTCATCCTTCTGGTGCTTTTCACCTCTCTGCAAATTGAAGCCAGCGACAGATTGTTCTTCAGCAAAGTTAGCGGTTCCAACAACAATTACAATGCCAAGGATCCCAAGATCCCCCTTAGTTACCAACAAGAGGCTAAACCTTCACCAGAAAAACCAATATTCTCTCGCAACGAATATGAAAGCTTATTCGGTCCTACAGATGACACATCGGCTGCCATTGGTACCAGCTCAAACAGCGAAAATGGCAAGCAAAACAACAAAAATGGGGATAACTTCATTTACAATACGGAAAGTGACTTCAATGGCAATGGCAATGGCGATGACAACATAGGGGATGAGATTAAGCAGCAAGGGCTCAGTGATACAAGGTTTTTGGAACATGGTCGCTACATTAATGTTGATAAAAATAGGTTCGATGATACTGCACGGAGAGGAAGCGCTGGTAATGAGGGTTTTGATGGCAAGATCGGGAAGCAGAACGAGTTCGACTCCTTGGAGGAATATGAGAAGTACCTGCAGAGGAACGGATATCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.2

Weight (kDa)

4.76

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	552
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	3 cut(s)	125, 133, 138
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	2 cut(s)	253, 542
AfeI	AGCGCT	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	68, 331
AluBI	AGCT	2 cut(s)	213, 258
AluI	AGCT	2 cut(s)	213, 258
AlwI	GGATC	3 cut(s)	125, 133, 138
Aor51HI	AGCGCT	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	242, 376
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	512
Asp718I	GGTACC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	43, 165
AvaII	GGWCC	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	229, 388
BccI	CCATC	1 cut(s)	482
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BfmI	CTRYAG	2 cut(s)	225, 545
BfoI	RGCGCY	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	552
BisI	GCNGC	2 cut(s)	243, 377
BlsI	GCNGC	2 cut(s)	244, 378
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	106, 132, 253
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BsaJI	CCNNGG	2 cut(s)	126, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse3DI	GCAATG	2 cut(s)	343, 349
BseDI	CCNNGG	2 cut(s)	126, 522
BseGI	GGATG	2 cut(s)	33, 370
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	2 cut(s)	343, 349
BseMII	CTCAG	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	229, 388
BsgI	GTGCAG	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	130, 138, 495
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	399
BspLI	GGNNCC	3 cut(s)	106, 132, 253
BspMAI	CTGCAG	1 cut(s)	549
BspMI	ACCTGC	1 cut(s)	552
BspPI	GGATC	3 cut(s)	125, 133, 138
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	2 cut(s)	343, 349
BssECI	CCNNGG	2 cut(s)	126, 522
BssMI	GATC	3 cut(s)	130, 138, 495
BssT1I	CCWWGG	2 cut(s)	126, 522
BstC8I	GCNNGC	2 cut(s)	73, 278
BstDEI	CTNAG	2 cut(s)	146, 386
BstF5I	GGATG	2 cut(s)	33, 370
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	3 cut(s)	133, 141, 498
BstMBI	GATC	3 cut(s)	130, 138, 495
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 264, 273, 382
BstSFI	CTRYAG	2 cut(s)	225, 545
BstV1I	GCAGC	2 cut(s)	229, 388
BstX2I	RGATCY	2 cut(s)	130, 138
BstYI	RGATCY	2 cut(s)	130, 138
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	33, 370
BtsIMutI	CAGTG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	552
Cac8I	GCNNGC	2 cut(s)	73, 278
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	252, 541
CviAII	CATG	1 cut(s)	410
CviJI	RGCY	7 cut(s)	5, 71, 164, 213, 242, 258, 385
CviKI_1	RGCY	7 cut(s)	5, 71, 164, 213, 242, 258, 385
CviQI	GTAC	2 cut(s)	252, 541
DdeI	CTNAG	2 cut(s)	146, 386
DpnI	GATC	3 cut(s)	132, 140, 497
DpnII	GATC	3 cut(s)	130, 138, 495
Eco130I	CCWWGG	2 cut(s)	126, 522
Eco24I	GRGCYC	1 cut(s)	387
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	221
Eco47III	AGCGCT	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	73
EcoRV	GATATC	1 cut(s)	560
EcoT14I	CCWWGG	2 cut(s)	126, 522
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	126, 522
FaeI	CATG	1 cut(s)	413
FaiI	YATR	4 cut(s)	207, 359, 411, 534
FatI	CATG	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	243, 377
FokI	GGATG	2 cut(s)	20, 377
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	243, 377
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	2 cut(s)	243, 377
HaeII	RGCGCY	1 cut(s)	471
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	1 cut(s)	413
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	211
HinfI	GANTC	1 cut(s)	518
HphI	GGTGA	2 cut(s)	43, 165
Hpy188III	TCNNGA	2 cut(s)	13, 499
HpyAV	CCTTC	3 cut(s)	19, 47, 180
HpyCH4V	TGCA	3 cut(s)	61, 455, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 264, 273, 382
HpyF3I	CTNAG	2 cut(s)	146, 386
Hsp92II	CATG	1 cut(s)	413
HspAI	GCGC	1 cut(s)	468
KpnI	GGTACC	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	130, 138, 495
LpnPI	CCDG	6 cut(s)	26, 85, 189, 268, 456, 557
Lsp1109I	GCAGC	2 cut(s)	229, 388
MaeIII	GTNAC	2 cut(s)	149, 323
MalI	GATC	3 cut(s)	132, 140, 497
MboI	GATC	3 cut(s)	130, 138, 495
MboII	GAAGA	2 cut(s)	79, 554
MflI	RGATCY	2 cut(s)	130, 138
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	2 cut(s)	63, 115
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	64, 154, 455, 472, 520, 543
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	2 cut(s)	372, 423
MwoI	GCNNNNNNNGC	4 cut(s)	99, 264, 273, 382
NdeII	GATC	3 cut(s)	130, 138, 495
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	3 cut(s)	106, 132, 253
NmuCI	GTSAC	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	244, 378
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PshBI	ATTAAT	1 cut(s)	423
PspN4I	GGNNCC	3 cut(s)	106, 132, 253
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	549
PsuI	RGATCY	2 cut(s)	130, 138
RsaI	GTAC	2 cut(s)	253, 542
RsaNI	GTAC	2 cut(s)	252, 541
SaqAI	TTAA	2 cut(s)	372, 423
SatI	GCNGC	2 cut(s)	243, 377
Sau3AI	GATC	3 cut(s)	130, 138, 495
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	7 cut(s)	56, 172, 215, 260, 401, 443, 546
SfcI	CTRYAG	2 cut(s)	225, 545
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	2 cut(s)	63, 115
SsiI	CCGC	1 cut(s)	102
SspI	AATATT	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	126, 522
TaqI	TCGA	2 cut(s)	444, 516
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	2 cut(s)	63, 115
Tru1I	TTAA	2 cut(s)	372, 423
Tru9I	TTAA	2 cut(s)	372, 423
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	242, 376
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	22, 222, 295
TspGWI	ACGGA	3 cut(s)	332, 472, 570
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	221
VspI	ATTAAT	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.