Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Forward (+)

43385901 .. 43386854

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCACTGTCCCCTAATAACGTAGAGAATTCTCATACCCAGATTGCACATTGCTTTTCTCTTCTCTTCAAGTTGAAAGCTAGACAGAGATTGTTCTTCAGCAAAGTCACCCACAGTAATGGGAATGAGCCCCCGATACCGGTCACAGAAGATCCAGCAACACCAACACCATCATATGCACCCACATATACACCAACATATTCACCATTATATGGACCAACATATGCACCAGCACCAGCACCAGAATTAACAGTAGCAGAGTCACCAGAAGGAGGAGCACCACTTGTACCAGCACCGGCACCGTTTGATTTTGAACCAGAGTTCGGCTATGAGCTATATGGTTCTGCCGATCAGGAGACACCAACCACCAATGATGTCCAAAATGAAGTTGCAACTCAAGAAAATGGTCATTATGAAAATACCAACTTGTACAACGACAACAGTAAGTACGCGACCAATTACAACAGCGACGGATACAACACCAACTACATCAATGGCAGAGAAGGCTTTACCAACAGCTATTACAGTAATGGCAATGGAAACAGCGTTGATGGGTTTGAACAGCAAGGGATGAGTGACACAAGGTTTCTGGAAAATGGAAGCTACCATCAGGACAATGACGTGAAGAATGAGAATAATGACAAGTTGAATGGGTACCAGTCCGGGAGAGGAAGCACTACAAATGAAGCGTATTTTGGTAACAGTGAGAAGCTCAATGAGTTCAACACCATGGAGGAGTATGAGAAGTACCAGGAGAACCAAGGATATGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.72

Weight (kDa)

4.35

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	654
AccB1I	GGYRCC	2 cut(s)	298, 654
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	1 cut(s)	452
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	5 cut(s)	288, 431, 449, 656, 749
AfiI	CCNNNNNNNGG	4 cut(s)	139, 212, 272, 323
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	6 cut(s)	70, 76, 314, 560, 649, 724
AjiI	CACGTC	1 cut(s)	622
AjnI	CCWGG	1 cut(s)	750
AjuI	GAANNNNNNNTTGG	2 cut(s)	678, 710
AluBI	AGCT	5 cut(s)	80, 334, 519, 603, 712
AluI	AGCT	5 cut(s)	80, 334, 519, 603, 712
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	28
AsiGI	ACCGGT	1 cut(s)	139
Asp718I	GGTACC	1 cut(s)	654
AspS9I	GGNCC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	664
AsuHPI	GGTGA	3 cut(s)	100, 195, 255
AvaII	GGWCC	1 cut(s)	215
BanI	GGYRCC	2 cut(s)	298, 654
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	280
BccI	CCATC	3 cut(s)	178, 545, 615
BciT130I	CCWGG	1 cut(s)	752
BciVI	GTATCC	1 cut(s)	467
BcnI	CCSGG	1 cut(s)	664
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	467
Bme1390I	CCNGG	2 cut(s)	664, 752
Bme18I	GGWCC	1 cut(s)	215
BmgBI	CACGTC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	300, 656
BmrFI	CCNGG	2 cut(s)	664, 752
BpuEI	CTTGAG	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	664
BsaJI	CCNNGG	2 cut(s)	729, 760
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 212, 272, 323
Bse118I	RCCGGY	2 cut(s)	139, 295
Bse1I	ACTGG	1 cut(s)	658
Bse3DI	GCAATG	2 cut(s)	49, 541
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	2 cut(s)	729, 760
BseGI	GGATG	1 cut(s)	576
BseLI	CCNNNNNNNGG	4 cut(s)	139, 212, 272, 323
BseMI	GCAATG	2 cut(s)	49, 541
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	2 cut(s)	288, 749
Bsh1236I	CGCG	1 cut(s)	452
BshNI	GGYRCC	2 cut(s)	298, 654
BshTI	ACCGGT	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	3 cut(s)	140, 296, 663
BslI	CCNNNNNNNGG	4 cut(s)	139, 212, 272, 323
BsmAI	GTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	132, 280
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	151, 349
Bsp19I	CCATGG	1 cut(s)	729
BspFNI	CGCG	1 cut(s)	452
BspLI	GGNNCC	2 cut(s)	300, 656
BspPI	GGATC	1 cut(s)	146
BspT107I	GGYRCC	2 cut(s)	298, 654
BsrDI	GCAATG	2 cut(s)	49, 541
BsrFI	RCCGGY	2 cut(s)	139, 295
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	658
BssAI	RCCGGY	2 cut(s)	139, 295
BssECI	CCNNGG	2 cut(s)	729, 760
BssMI	GATC	2 cut(s)	151, 349
BssT1I	CCWWGG	2 cut(s)	729, 760
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	7 cut(s)	9, 116, 253, 303, 443, 527, 704
Bst6I	CTCTTC	2 cut(s)	66, 71
BstAUI	TGTACA	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	729
BstF5I	GGATG	1 cut(s)	576
BstFNI	CGCG	1 cut(s)	452
BstKTI	GATC	2 cut(s)	154, 352
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	2 cut(s)	151, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	504
BstNI	CCWGG	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	662, 750
BstUI	CGCG	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	729
BtrI	CACGTC	1 cut(s)	622
BtsCI	GGATG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	5, 709
Cfr10I	RCCGGY	2 cut(s)	139, 295
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	5 cut(s)	287, 430, 448, 655, 748
CspAI	ACCGGT	1 cut(s)	139
CviAII	CATG	1 cut(s)	730
CviJI	RGCY	8 cut(s)	80, 130, 327, 334, 507, 519, 603, 712
CviKI_1	RGCY	8 cut(s)	80, 130, 327, 334, 507, 519, 603, 712
CviQI	GTAC	5 cut(s)	287, 430, 448, 655, 748
DpnI	GATC	2 cut(s)	153, 351
DpnII	GATC	2 cut(s)	151, 349
Eam1104I	CTCTTC	2 cut(s)	66, 71
EarI	CTCTTC	2 cut(s)	66, 71
Eco130I	CCWWGG	2 cut(s)	729, 760
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	750
EcoT14I	CCWWGG	2 cut(s)	729, 760
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	2 cut(s)	729, 760
FaeI	CATG	1 cut(s)	733
FatI	CATG	1 cut(s)	729
FauNDI	CATATG	2 cut(s)	175, 223
FokI	GGATG	1 cut(s)	583
FriOI	GRGCYC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	81
HapII	CCGG	3 cut(s)	140, 296, 663
Hin1II	CATG	1 cut(s)	733
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	3 cut(s)	140, 296, 663
HphI	GGTGA	3 cut(s)	100, 195, 255
Hpy188III	TCNNGA	4 cut(s)	353, 398, 590, 611
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	2 cut(s)	263, 497
HpyCH4III	ACNGT	7 cut(s)	9, 116, 253, 303, 443, 527, 704
HpyCH4IV	ACGT	2 cut(s)	21, 621
HpyCH4V	TGCA	4 cut(s)	47, 179, 227, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	504
HpySE526I	ACGT	2 cut(s)	21, 621
Hsp92II	CATG	1 cut(s)	733
KpnI	GGTACC	1 cut(s)	658
Kzo9I	GATC	2 cut(s)	151, 349
LmnI	GCTCC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	2 cut(s)	21, 621
MaeIII	GTNAC	5 cut(s)	106, 142, 261, 575, 698
MalI	GATC	2 cut(s)	153, 351
MboI	GATC	2 cut(s)	151, 349
MboII	GAAGA	5 cut(s)	53, 58, 88, 161, 637
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	132, 280
MluCI	AATT	3 cut(s)	28, 245, 457
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	3 cut(s)	266, 662, 727
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	3 cut(s)	140, 296, 663
MspR9I	CCNGG	2 cut(s)	664, 752
MvaI	CCWGG	1 cut(s)	752
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	1 cut(s)	504
NciI	CCSGG	1 cut(s)	664
NcoI	CCATGG	1 cut(s)	729
NdeI	CATATG	2 cut(s)	175, 223
NdeII	GATC	2 cut(s)	151, 349
NlaIII	CATG	1 cut(s)	733
NlaIV	GGNNCC	2 cut(s)	300, 656
NmuCI	GTSAC	4 cut(s)	106, 142, 261, 575
PflMI	CCANNNNNTGG	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	662
PinAI	ACCGGT	1 cut(s)	139
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	2 cut(s)	300, 656
PspPI	GGNCC	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	5 cut(s)	288, 431, 449, 656, 749
RsaNI	GTAC	5 cut(s)	287, 430, 448, 655, 748
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	248
Sau3AI	GATC	2 cut(s)	151, 349
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	664, 752
SduI	GDGCHC	2 cut(s)	132, 280
SetI	ASST	8 cut(s)	24, 82, 336, 521, 587, 605, 624, 714
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	3 cut(s)	28, 245, 457
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	662, 750
StyI	CCWWGG	2 cut(s)	729, 760
TaaI	ACNGT	7 cut(s)	9, 116, 253, 303, 443, 527, 704
TaiI	ACGT	2 cut(s)	24, 624
TasI	AATT	3 cut(s)	28, 245, 457
TatI	WGTACW	1 cut(s)	429
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	2 cut(s)	12, 709
TseFI	GTSAC	4 cut(s)	106, 142, 261, 575
Tsp45I	GTSAC	4 cut(s)	106, 142, 261, 575
TspDTI	ATGAA	3 cut(s)	399, 429, 699
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	2 cut(s)	12, 709
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	28
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.