Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Forward (+)

31109156 .. 31109779

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTTCCTTCGTGAAAACAATCTCATTTTTCATCCTTCTGGTGCTTTTCACCTCTCTGCAAATTGAAGCCAGCGACAGATTGTTCTTCAGCAAAGTTAGCGGTTCCAACAACAATTACAATGCCAAGGATCCCAAGATCCCCCTTAGTTACCAACAAGAGGCTAAACCTTCACCAGAAATTGCAGCACTAACAACCCAGGCACAAAAAGCGGCTGTTGATCCACCAAAGAAACCAATGTTCTCTCGCAACGAATATGAAAGCTTATTCGGTTCTACATATGACACATCGGCTGCCATTGGTACCAGCTCAAACAGCGACAATGGCAAGAAAAACAACAACAATGGGGATAACTTCATTTACAATATGGAAAGTGACTTCAATGGCAATGGCAATGGCAATGGCGATGAGAACATCGGGGATAAGATTAAGCAGCAAGGGCTCAGTGATACAAGGTTTTTGGAACATGGTCGTTACATTGTTGACAAAAATAGGTTCAATGATATTGCACGGAGAGGAAGCGCCGGTAATGAGGGTTTTGATGGCAAGAGCGGGAAGCAGAACGAGTTCGACTCCTTGGATGAATATGAGAAGTACCTGCAGAGGACCGGATATCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.99

Weight (kDa)

5.32

Isoelectric Point (pI)

21.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	606
Acc65I	GGTACC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	552
AciI	CCGC	3 cut(s)	102, 212, 552
AclWI	GGATC	4 cut(s)	125, 133, 138, 215
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	2 cut(s)	304, 596
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	68, 382, 499
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	264, 309
AluI	AGCT	2 cut(s)	264, 309
AlwI	GGATC	4 cut(s)	125, 133, 138, 215
ApeKI	GCWGC	3 cut(s)	185, 293, 433
Asp700I	GAANNNNTTC	1 cut(s)	566
Asp718I	GGTACC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	43, 165
AvaII	GGWCC	1 cut(s)	606
BamHI	GGATCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	197, 280, 445
BccI	CCATC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	599
BfoI	RGCGCY	1 cut(s)	525
BfuAI	ACCTGC	1 cut(s)	606
BisI	GCNGC	4 cut(s)	186, 213, 294, 434
BlsI	GCNGC	4 cut(s)	187, 214, 295, 435
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	3 cut(s)	106, 132, 304
BmrFI	CCNGG	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
BsaJI	CCNNGG	3 cut(s)	126, 198, 576
BsaWI	WCCGGW	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	524
Bse3DI	GCAATG	3 cut(s)	394, 400, 406
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	126, 198, 576
BseGI	GGATG	2 cut(s)	33, 586
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	3 cut(s)	394, 400, 406
BseMII	CTCAG	1 cut(s)	457
BseXI	GCAGC	3 cut(s)	197, 280, 445
BshNI	GGYRCC	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	525, 609
BslI	CCNNNNNNNGG	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	130, 138, 220
BspACI	CCGC	3 cut(s)	102, 212, 552
BspCNI	CTCAG	1 cut(s)	456
BspLI	GGNNCC	3 cut(s)	106, 132, 304
BspMAI	CTGCAG	1 cut(s)	603
BspMI	ACCTGC	1 cut(s)	606
BspPI	GGATC	4 cut(s)	125, 133, 138, 215
BspT107I	GGYRCC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	552
BsrDI	GCAATG	3 cut(s)	394, 400, 406
BsrFI	RCCGGY	1 cut(s)	524
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	3 cut(s)	126, 198, 576
BssMI	GATC	3 cut(s)	130, 138, 220
BssT1I	CCWWGG	2 cut(s)	126, 576
Bst2UI	CCWGG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	146, 443
BstF5I	GGATG	2 cut(s)	33, 586
BstH2I	RGCGCY	1 cut(s)	525
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	3 cut(s)	133, 141, 223
BstMBI	GATC	3 cut(s)	130, 138, 220
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 209, 315, 324, 439
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	599
BstV1I	GCAGC	3 cut(s)	197, 280, 445
BstX2I	RGATCY	2 cut(s)	130, 138
BstYI	RGATCY	2 cut(s)	130, 138
BtgZI	GCGATG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	33, 586
BtsIMutI	CAGTG	1 cut(s)	451
BveI	ACCTGC	1 cut(s)	606
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	524
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	303, 595
CviAII	CATG	1 cut(s)	467
CviJI	RGCY	8 cut(s)	5, 71, 164, 215, 264, 293, 309, 442
CviKI_1	RGCY	8 cut(s)	5, 71, 164, 215, 264, 293, 309, 442
CviQI	GTAC	2 cut(s)	303, 595
DdeI	CTNAG	2 cut(s)	146, 443
DpnI	GATC	3 cut(s)	132, 140, 222
DpnII	GATC	3 cut(s)	130, 138, 220
Eco130I	CCWWGG	2 cut(s)	126, 576
Eco24I	GRGCYC	1 cut(s)	444
Eco32I	GATATC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	614
EcoT14I	CCWWGG	2 cut(s)	126, 576
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	2 cut(s)	126, 576
FaeI	CATG	1 cut(s)	470
FaiI	YATR	6 cut(s)	258, 280, 282, 368, 468, 588
FatI	CATG	1 cut(s)	466
FauI	CCCGC	1 cut(s)	545
FauNDI	CATATG	1 cut(s)	280
Fnu4HI	GCNGC	4 cut(s)	186, 213, 294, 434
FokI	GGATG	2 cut(s)	20, 593
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	4 cut(s)	186, 213, 294, 434
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	4 cut(s)	186, 213, 294, 434
HaeII	RGCGCY	1 cut(s)	525
HapII	CCGG	2 cut(s)	525, 609
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	1 cut(s)	470
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	1 cut(s)	572
HpaII	CCGG	2 cut(s)	525, 609
HphI	GGTGA	2 cut(s)	43, 165
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	3 cut(s)	19, 47, 180
HpyCH4V	TGCA	4 cut(s)	61, 185, 509, 601
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 209, 315, 324, 439
HpyF3I	CTNAG	2 cut(s)	146, 443
Hsp92II	CATG	1 cut(s)	470
HspAI	GCGC	1 cut(s)	522
KpnI	GGTACC	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	130, 138, 220
LpnPI	CCDG	8 cut(s)	26, 85, 185, 189, 212, 319, 538, 611
Lsp1109I	GCAGC	3 cut(s)	197, 280, 445
MaeIII	GTNAC	3 cut(s)	149, 374, 473
MalI	GATC	3 cut(s)	132, 140, 222
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	3 cut(s)	130, 138, 220
MboII	GAAGA	2 cut(s)	79, 608
MflI	RGATCY	2 cut(s)	130, 138
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	3 cut(s)	63, 115, 180
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	5 cut(s)	64, 154, 509, 526, 597
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	1 cut(s)	429
MspI	CCGG	2 cut(s)	525, 609
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	5 cut(s)	99, 209, 315, 324, 439
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	3 cut(s)	130, 138, 220
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	3 cut(s)	106, 132, 304
NmuCI	GTSAC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	566
PkrI	GCNGC	4 cut(s)	187, 214, 295, 435
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	3 cut(s)	106, 132, 304
PspPI	GGNCC	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	603
PsuI	RGATCY	2 cut(s)	130, 138
RsaI	GTAC	2 cut(s)	304, 596
RsaNI	GTAC	2 cut(s)	303, 595
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	4 cut(s)	186, 213, 294, 434
Sau3AI	GATC	3 cut(s)	130, 138, 220
Sau96I	GGNCC	1 cut(s)	606
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	7 cut(s)	56, 172, 266, 311, 458, 497, 600
SfcI	CTRYAG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	606
Sse9I	AATT	3 cut(s)	63, 115, 180
SsiI	CCGC	3 cut(s)	102, 212, 552
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	2 cut(s)	126, 576
TaqI	TCGA	1 cut(s)	570
TasI	AATT	3 cut(s)	63, 115, 180
TauI	GCSGC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	3 cut(s)	185, 293, 433
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	4 cut(s)	22, 273, 346, 597
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.