Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Reverse (-)

41049786 .. 41050556

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGACTTCCTCTGCAAAAGCTCTCCCATTTTTCTTTCTTCTAGTGCTTTTCTCTTCTCTTCAAGTTGAAGCTAGACAGAGATTGTTCTTCAGCAAAGTCACCCACAGTAATGGGAATGAGCCCCAGATACCGGTCACAGAAGATCCAGCAATACCAACACCATCATATGCACCCACATATACACCAACATATTCACCATTATATGGACCAACACATGCACCAGCACCAGCACCAGAATTAACAGTAGCAGAGTCACCAGAAGGAGGAGCACCAGTACTTGTACCAGCACCGGCACCGTTTGATTCTGAACCAGAGTTCGGCTATGAGCTATATGGTTCTGCCGATCAGGAGACACCAACCACCATTGATGTCCAAAATGAAGTTGCAACTCAAGAAAATGGTCATTATGAAAATACCAACTTGTACAACGACAACAGTAAGTATGCGACCAATTACAACAACGATGGATACACCACCAACTACATCAATGGCAGAGAAGGCTTTACCAACAGCTATTACAGTAATGGCAATGGAAACAGTGTTGATGGGTTTGAACAGCAAGGGATGAGTGACACAAGGTTTATGGAAAATGGAAGCTACTATCAGGACAATGACGTGAAGAATGAGAATAATGACAAGTTGAATGGGTACCAGTCCGGGAGAGGAAGCACTACAAATGAAGCGTATTTTGGTAACAGTGAGAAGCCCAATGAGTTCAACACCATGGAGGAGTATGAGAAGTACCAGGAGAACCAAGGATATGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.45

Weight (kDa)

4.2

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	648
AccB1I	GGYRCC	2 cut(s)	292, 648
AccB7I	CCANNNNNTGG	1 cut(s)	203
AclWI	GGATC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	5 cut(s)	276, 282, 425, 650, 743
AfiI	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 317
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	5 cut(s)	62, 68, 554, 643, 718
AjiI	CACGTC	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	744
AjuI	GAANNNNNNNTTGG	2 cut(s)	672, 704
AluBI	AGCT	5 cut(s)	20, 71, 328, 513, 597
AluI	AGCT	5 cut(s)	20, 71, 328, 513, 597
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	137
AsiGI	ACCGGT	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	658
AsuHPI	GGTGA	3 cut(s)	91, 186, 246
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	2 cut(s)	292, 648
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	271
BccI	CCATC	3 cut(s)	169, 458, 539
BciT130I	CCWGG	1 cut(s)	746
BciVI	GTATCC	1 cut(s)	461
BcnI	CCSGG	1 cut(s)	658
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	2 cut(s)	41, 72
BfuI	GTATCC	1 cut(s)	461
BmcAI	AGTACT	1 cut(s)	276
Bme1390I	CCNGG	2 cut(s)	658, 746
Bme18I	GGWCC	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	294, 650
BmrFI	CCNGG	2 cut(s)	658, 746
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	723, 754
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 317
Bse118I	RCCGGY	2 cut(s)	130, 289
Bse1I	ACTGG	2 cut(s)	272, 652
Bse3DI	GCAATG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	746
BseDI	CCNNGG	2 cut(s)	723, 754
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 317
BseMI	GCAATG	1 cut(s)	535
BseNI	ACTGG	2 cut(s)	272, 652
BseRI	GAGGAG	2 cut(s)	279, 743
BshNI	GGYRCC	2 cut(s)	292, 648
BshTI	ACCGGT	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	3 cut(s)	131, 290, 657
BslI	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 317
BsmAI	GTCTC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	123, 271
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	142, 343
Bsp19I	CCATGG	1 cut(s)	723
BspLI	GGNNCC	2 cut(s)	294, 650
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	2 cut(s)	292, 648
BsrDI	GCAATG	1 cut(s)	535
BsrFI	RCCGGY	2 cut(s)	130, 289
BsrGI	TGTACA	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	272, 652
BssAI	RCCGGY	2 cut(s)	130, 289
BssECI	CCNNGG	2 cut(s)	723, 754
BssMI	GATC	2 cut(s)	142, 343
BssT1I	CCWWGG	2 cut(s)	723, 754
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	7 cut(s)	107, 244, 297, 437, 521, 539, 698
Bst6I	CTCTTC	2 cut(s)	58, 63
BstAUI	TGTACA	1 cut(s)	423
BstDSI	CCRYGG	1 cut(s)	723
BstF5I	GGATG	1 cut(s)	570
BstKTI	GATC	2 cut(s)	145, 346
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	2 cut(s)	142, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	746
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	656, 744
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	461
BtgI	CCRYGG	1 cut(s)	723
BtrI	CACGTC	1 cut(s)	616
BtsCI	GGATG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	544, 703
Cfr10I	RCCGGY	2 cut(s)	130, 289
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	5 cut(s)	275, 281, 424, 649, 742
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	2 cut(s)	215, 724
CviJI	RGCY	9 cut(s)	20, 71, 121, 321, 328, 501, 513, 597, 706
CviKI_1	RGCY	9 cut(s)	20, 71, 121, 321, 328, 501, 513, 597, 706
CviQI	GTAC	5 cut(s)	275, 281, 424, 649, 742
DpnI	GATC	2 cut(s)	144, 345
DpnII	GATC	2 cut(s)	142, 343
Eam1104I	CTCTTC	2 cut(s)	58, 63
EarI	CTCTTC	2 cut(s)	58, 63
Eco130I	CCWWGG	2 cut(s)	723, 754
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	744
EcoT14I	CCWWGG	2 cut(s)	723, 754
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	2 cut(s)	723, 754
FaeI	CATG	2 cut(s)	218, 727
FatI	CATG	2 cut(s)	214, 723
FauNDI	CATATG	1 cut(s)	166
FokI	GGATG	1 cut(s)	577
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	41, 72
HapII	CCGG	3 cut(s)	131, 290, 657
Hin1II	CATG	2 cut(s)	218, 727
HinfI	GANTC	2 cut(s)	251, 302
HpaII	CCGG	3 cut(s)	131, 290, 657
HphI	GGTGA	3 cut(s)	91, 186, 246
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	3 cut(s)	347, 392, 605
HpyAV	CCTTC	2 cut(s)	254, 491
HpyCH4III	ACNGT	7 cut(s)	107, 244, 297, 437, 521, 539, 698
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	4 cut(s)	14, 170, 218, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	2 cut(s)	218, 727
KpnI	GGTACC	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	142, 343
LmnI	GCTCC	1 cut(s)	266
MaeI	CTAG	2 cut(s)	41, 72
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	5 cut(s)	97, 133, 252, 569, 692
MalI	GATC	2 cut(s)	144, 345
MboI	GATC	2 cut(s)	142, 343
MboII	GAAGA	6 cut(s)	29, 45, 50, 79, 152, 631
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	123, 271
MluCI	AATT	2 cut(s)	236, 451
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	19, 257, 656, 721
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	3 cut(s)	131, 290, 657
MspR9I	CCNGG	2 cut(s)	658, 746
MvaI	CCWGG	1 cut(s)	746
MwoI	GCNNNNNNNGC	1 cut(s)	498
NciI	CCSGG	1 cut(s)	658
NcoI	CCATGG	1 cut(s)	723
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	142, 343
NlaIII	CATG	2 cut(s)	218, 727
NlaIV	GGNNCC	2 cut(s)	294, 650
NmuCI	GTSAC	4 cut(s)	97, 133, 252, 569
NspI	RCATGY	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	656
PinAI	ACCGGT	1 cut(s)	130
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	2 cut(s)	294, 650
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	5 cut(s)	276, 282, 425, 650, 743
RsaNI	GTAC	5 cut(s)	275, 281, 424, 649, 742
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	142, 343
Sau96I	GGNCC	1 cut(s)	206
ScaI	AGTACT	1 cut(s)	276
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	2 cut(s)	658, 746
SduI	GDGCHC	2 cut(s)	123, 271
SetI	ASST	7 cut(s)	22, 73, 330, 515, 581, 599, 618
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	2 cut(s)	236, 451
SspMI	CTAG	2 cut(s)	41, 72
StyD4I	CCNGG	2 cut(s)	656, 744
StyI	CCWWGG	2 cut(s)	723, 754
TaaI	ACNGT	7 cut(s)	107, 244, 297, 437, 521, 539, 698
TaiI	ACGT	1 cut(s)	618
TasI	AATT	2 cut(s)	236, 451
TatI	WGTACW	2 cut(s)	274, 423
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	544, 703
TseFI	GTSAC	4 cut(s)	97, 133, 252, 569
Tsp45I	GTSAC	4 cut(s)	97, 133, 252, 569
TspDTI	ATGAA	3 cut(s)	393, 423, 693
TspRI	CASTG	2 cut(s)	544, 703
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	206
XceI	RCATGY	1 cut(s)	218
XspI	CTAG	2 cut(s)	41, 72
ZrmI	AGTACT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.