Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Forward (+)

30934103 .. 30934990

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1241900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCTTCTTTTGCAAAACCACTGCCATTTTTCTTCCTTCTGGTGCTAGTTTGCTCTTCTTTTATACGCATCATTCATGCTAGACAGAGCGTGTCTTTCAGCAAGGTCACCCACGACGACAACAACAACAACGACAAAAACGATAATTATGTTATGGAGGCGGAGGCCGAAGCACCAACGCCAGCACTACAAGTAGTAGCAGAGGCACCGGAACTAGTACCAACACCGGCACCGACACCAAGTTACACCGAAAGAGACCATGGCAGCAACAGCGGCCTTTATGGTCTTGGCTCGACCAATTCCCCTTCCACGAAGGAGACTCCAACCACAATTACCGATGTTGAAGATCAAATTTTGAGTGAAGAACTTAGCGGTGAAAGTTTTGATCATCCAAAAGGTAATTACGAAAGCACCAACTTGTACAACAAGGACAACATTAATCAGGACACTGGCTACACCGGCAACAGCTACTATGTCAAAAACTACGATAGCAGAGGAGGCTACAACCGCAATCCCCCGAGTGGAGGCAATGGGATTAGTGAACAGCAAGGGATTAGTAAACAGGACATTGGCTACACCGTCAACAGTTACTACGTCAAAAATTTCGATGGCAGAGGAGGCTACAACCGCAATCCCCCCGGTGGAGGGAATGAGATTAGTGAACAGCAAGGGATGAGTGATACAAGGTTTCTGGAAAATGGTAAATACTATCATGATGTGAAGAATGAGATCAAAAATAATAATTTCAATGGTAACTACGAATCAGATGGGAGAGGAAGTACCAGAAATGATGTTGAGGGCTATTATGGCAACAGTCACAGCTCCAATGAATTCAACACCATGGAGGAGTATGATAGGTACCAGAAGACCCAAGGATATGTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

32.81

Weight (kDa)

4.75

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	858
AccB1I	GGYRCC	3 cut(s)	205, 229, 858
AciI	CCGC	5 cut(s)	161, 273, 372, 508, 628
AcsI	RAATTY	3 cut(s)	351, 601, 830
AfaI	GTAC	4 cut(s)	219, 422, 781, 860
AfiI	CCNNNNNNNGG	5 cut(s)	521, 524, 641, 644, 645
AgsI	TTSAA	3 cut(s)	344, 748, 835
AhlI	ACTAGT	1 cut(s)	214
AluBI	AGCT	2 cut(s)	468, 822
AluI	AGCT	2 cut(s)	468, 822
Alw26I	GTCTC	2 cut(s)	249, 311
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	2 cut(s)	165, 274
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	3 cut(s)	351, 601, 830
AseI	ATTAAT	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	858
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	2 cut(s)	100, 386
AvaI	CYCGRG	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	885
BanI	GGYRCC	3 cut(s)	205, 229, 858
BbsI	GAAGAC	1 cut(s)	872
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	602, 761
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	249, 311
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	3 cut(s)	47, 81, 215
BisI	GCNGC	2 cut(s)	265, 274
BlsI	GCNGC	2 cut(s)	266, 275
Bme1390I	CCNGG	1 cut(s)	639
BmeT110I	CYCGRG	1 cut(s)	517
BmiI	GGNNCC	3 cut(s)	207, 231, 860
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	872
BpuMI	CCSGG	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	249
BsaJI	CCNNGG	4 cut(s)	259, 637, 840, 871
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	763, 793
Bsc4I	CCNNNNNNNGG	5 cut(s)	521, 524, 641, 644, 645
Bse118I	RCCGGY	2 cut(s)	226, 458
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	535
BseDI	CCNNGG	4 cut(s)	259, 637, 840, 871
BseGI	GGATG	2 cut(s)	388, 678
BseLI	CCNNNNNNNGG	5 cut(s)	521, 524, 641, 644, 645
BseMI	GCAATG	1 cut(s)	535
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	3 cut(s)	510, 630, 860
BseSI	GKGCMC	1 cut(s)	885
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	2 cut(s)	167, 276
BshNI	GGYRCC	3 cut(s)	205, 229, 858
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	4 cut(s)	209, 227, 459, 639
BslI	CCNNNNNNNGG	5 cut(s)	521, 524, 641, 644, 645
BsmAI	GTCTC	2 cut(s)	249, 311
BsnI	GGCC	2 cut(s)	167, 276
Bso31I	GGTCTC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	885
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	346, 385, 729
Bsp19I	CCATGG	2 cut(s)	259, 840
BspACI	CCGC	5 cut(s)	161, 273, 372, 508, 628
BspANI	GGCC	2 cut(s)	167, 276
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	207, 231, 860
BspQI	GCTCTTC	1 cut(s)	61
BspT107I	GGYRCC	3 cut(s)	205, 229, 858
BspTNI	GGTCTC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	535
BsrFI	RCCGGY	2 cut(s)	226, 458
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	454
BssAI	RCCGGY	2 cut(s)	226, 458
BssECI	CCNNGG	4 cut(s)	259, 637, 840, 871
BssMI	GATC	3 cut(s)	346, 385, 729
BssT1I	CCWWGG	3 cut(s)	259, 840, 871
Bst4CI	ACNGT	3 cut(s)	580, 587, 815
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	368
BstDSI	CCRYGG	2 cut(s)	259, 840
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	388, 678
BstKTI	GATC	3 cut(s)	349, 388, 732
BstMAI	GTCTC	2 cut(s)	249, 311
BstMBI	GATC	3 cut(s)	346, 385, 729
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 270, 273, 459, 498, 507, 618, 627, 807
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	885
BstV1I	GCAGC	1 cut(s)	276
BstV2I	GAAGAC	1 cut(s)	872
BsuRI	GGCC	2 cut(s)	167, 276
BtgI	CCRYGG	2 cut(s)	259, 840
BtsCI	GGATG	2 cut(s)	388, 678
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	2 cut(s)	20, 447
Cac8I	GCNNGC	1 cut(s)	183
CciI	TCATGA	1 cut(s)	712
Cfr10I	RCCGGY	2 cut(s)	226, 458
Csp6I	GTAC	4 cut(s)	218, 421, 780, 859
CviAII	CATG	4 cut(s)	77, 260, 713, 841
CviQI	GTAC	4 cut(s)	218, 421, 780, 859
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	3 cut(s)	348, 387, 731
DpnII	GATC	3 cut(s)	346, 385, 729
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	3 cut(s)	259, 840, 871
Eco31I	GGTCTC	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	830
EcoT14I	CCWWGG	3 cut(s)	259, 840, 871
ErhI	CCWWGG	3 cut(s)	259, 840, 871
FaeI	CATG	4 cut(s)	80, 263, 716, 844
FatI	CATG	4 cut(s)	76, 259, 712, 840
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	265, 274
FokI	GGATG	2 cut(s)	375, 685
Fsp4HI	GCNGC	2 cut(s)	265, 274
FspBI	CTAG	3 cut(s)	47, 81, 215
GluI	GCNGC	2 cut(s)	265, 274
HaeIII	GGCC	2 cut(s)	167, 276
HapII	CCGG	4 cut(s)	209, 227, 459, 639
Hin1II	CATG	4 cut(s)	80, 263, 716, 844
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	2 cut(s)	319, 761
HpaII	CCGG	4 cut(s)	209, 227, 459, 639
HphI	GGTGA	2 cut(s)	100, 386
Hpy166II	GTNNAC	4 cut(s)	542, 560, 583, 662
Hpy188I	TCNGA	1 cut(s)	766
Hpy188III	TCNNGA	3 cut(s)	443, 692, 713
Hpy8I	GTNNAC	4 cut(s)	542, 560, 583, 662
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	47, 307, 315
HpyCH4III	ACNGT	3 cut(s)	580, 587, 815
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 270, 273, 459, 498, 507, 618, 627, 807
HpyF3I	CTNAG	1 cut(s)	368
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	4 cut(s)	80, 263, 716, 844
KpnI	GGTACC	1 cut(s)	862
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	346, 385, 729
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	827
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	3 cut(s)	47, 81, 215
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	5 cut(s)	106, 242, 587, 752, 815
MalI	GATC	3 cut(s)	348, 387, 731
MboI	GATC	3 cut(s)	346, 385, 729
MboII	GAAGA	6 cut(s)	25, 48, 356, 374, 733, 877
MhlI	GDGCHC	1 cut(s)	885
MluCI	AATT	8 cut(s)	145, 298, 330, 351, 400, 601, 742, 830
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	347
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	4 cut(s)	209, 227, 459, 639
MspR9I	CCNGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	9 cut(s)	11, 270, 273, 459, 498, 507, 618, 627, 807
NciI	CCSGG	1 cut(s)	639
NcoI	CCATGG	2 cut(s)	259, 840
NdeII	GATC	3 cut(s)	346, 385, 729
NlaIII	CATG	4 cut(s)	80, 263, 716, 844
NlaIV	GGNNCC	3 cut(s)	207, 231, 860
NmuCI	GTSAC	2 cut(s)	106, 815
PagI	TCATGA	1 cut(s)	712
PciSI	GCTCTTC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	761
PkrI	GCNGC	2 cut(s)	266, 275
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PshBI	ATTAAT	1 cut(s)	438
PspEI	GGTNACC	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	207, 231, 860
RsaI	GTAC	4 cut(s)	219, 422, 781, 860
RsaNI	GTAC	4 cut(s)	218, 421, 780, 859
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	2 cut(s)	265, 274
Sau3AI	GATC	3 cut(s)	346, 385, 729
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	1 cut(s)	885
SetI	ASST	7 cut(s)	108, 400, 470, 597, 689, 824, 860
SfaNI	GCATC	1 cut(s)	78
SpeI	ACTAGT	1 cut(s)	214
Sse9I	AATT	8 cut(s)	145, 298, 330, 351, 400, 601, 742, 830
SsiI	CCGC	5 cut(s)	161, 273, 372, 508, 628
SspMI	CTAG	3 cut(s)	47, 81, 215
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	3 cut(s)	259, 840, 871
TaaI	ACNGT	3 cut(s)	580, 587, 815
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	293, 606
TasI	AATT	8 cut(s)	145, 298, 330, 351, 400, 601, 742, 830
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	27, 454
TseFI	GTSAC	2 cut(s)	106, 815
TseI	GCWGC	1 cut(s)	264
Tsp45I	GTSAC	2 cut(s)	106, 815
TspDTI	ATGAA	2 cut(s)	65, 843
TspRI	CASTG	2 cut(s)	27, 454
VspI	ATTAAT	1 cut(s)	438
XapI	RAATTY	3 cut(s)	351, 601, 830
XspI	CTAG	3 cut(s)	47, 81, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.