Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Forward (+)

16393239 .. 16393984

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGTCCTCGGAGAAATCACTCTCTTTTTTCTTCTTTCTCATGCTTTTCTCCTCCCTGCAGATTGAAGCCAGCAGCAGATTTTTCTTCAGCAAAGCTAGCGGTTCCAAAAACAATTACAATGCCGAGGATGCCAACAATATCCCCCTAAGTTACGAACAACAGGCTAAACCTCTACCAGAAGTTGCAGCACCAACCAAGGCACCAAGAGTGGTTGTTGATCAACCAAAGGAACCAAGTTTCACTCGCAACCAGTACGGCGGCTACGGATTATTCGGTTCTACAGAGGGCACATCGGCTAACACTGATACCAGCTCAAACAACGAGAAAAACAACAACAATGAGGACAACTTCATTTACAATTTGGAGAATGATTTTAACGGCAATAGCAAGGACAACATTTGGGATGAGATTAAACAACAAGGTCTTACACAATCTTTGGAAGATGGTCGTTACAATGTTGATCTAGACAATGAAAATAAAAATAGGTTCAATGGTTACGATCCCGTGAGGAGAGGAAGCACTGGAAATGAGGATTATGATGGTGAGAGCGAGAAGCAGAACGAGTTCGACTCCTTGGAAGAGTTTGAGAAGTACCTGCAGAGGCTCGGATATCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.5

Weight (kDa)

4.46

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	202
AciI	CCGC	2 cut(s)	102, 261
AclWI	GGATC	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	257, 596
AgsI	TTSAA	2 cut(s)	68, 493
AluBI	AGCT	2 cut(s)	98, 315
AluI	AGCT	2 cut(s)	98, 315
AlwI	GGATC	1 cut(s)	497
ApeKI	GCWGC	2 cut(s)	75, 188
Asp700I	GAANNNNTTC	1 cut(s)	566
AsuHPI	GGTGA	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	87, 200
BccI	CCATC	2 cut(s)	440, 536
BceAI	ACGGC	2 cut(s)	274, 397
BclI	TGATCA	1 cut(s)	220
BfaI	CTAG	2 cut(s)	99, 467
BfmI	CTRYAG	3 cut(s)	59, 282, 599
BfuAI	ACCTGC	1 cut(s)	606
BisI	GCNGC	3 cut(s)	76, 189, 262
BlsI	GCNGC	3 cut(s)	77, 190, 263
BmiI	GGNNCC	3 cut(s)	106, 204, 234
BmsI	GCATC	1 cut(s)	121
BmtI	GCTAGC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	9, 126, 198, 576
Bse1I	ACTGG	2 cut(s)	253, 529
BseDI	CCNNGG	4 cut(s)	9, 126, 198, 576
BseGI	GGATG	2 cut(s)	136, 412
BseNI	ACTGG	2 cut(s)	253, 529
BseRI	GAGGAG	2 cut(s)	43, 526
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	87, 200
BshNI	GGYRCC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	3 cut(s)	220, 463, 502
BspACI	CCGC	2 cut(s)	102, 261
BspLI	GGNNCC	3 cut(s)	106, 204, 234
BspMAI	CTGCAG	2 cut(s)	63, 603
BspMI	ACCTGC	1 cut(s)	606
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	253, 529
BssECI	CCNNGG	4 cut(s)	9, 126, 198, 576
BssMI	GATC	3 cut(s)	220, 463, 502
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	198, 576
Bst6I	CTCTTC	1 cut(s)	576
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	73, 100
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	136, 412
BstKTI	GATC	3 cut(s)	223, 466, 505
BstMBI	GATC	3 cut(s)	220, 463, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 131
BstSFI	CTRYAG	3 cut(s)	59, 282, 599
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	2 cut(s)	87, 200
BtsCI	GGATG	2 cut(s)	136, 412
BtsIMutI	CAGTG	2 cut(s)	303, 522
BveI	ACCTGC	1 cut(s)	606
Cac8I	GCNNGC	2 cut(s)	73, 100
Csp6I	GTAC	2 cut(s)	256, 595
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	7 cut(s)	71, 98, 167, 264, 299, 315, 607
CviKI_1	RGCY	7 cut(s)	71, 98, 167, 264, 299, 315, 607
CviQI	GTAC	2 cut(s)	256, 595
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	3 cut(s)	222, 465, 504
DpnII	GATC	3 cut(s)	220, 463, 502
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	2 cut(s)	198, 576
Eco32I	GATATC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	73
EcoRV	GATATC	1 cut(s)	614
EcoT14I	CCWWGG	2 cut(s)	198, 576
ErhI	CCWWGG	2 cut(s)	198, 576
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 540
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	76, 189, 262
FokI	GGATG	2 cut(s)	143, 419
Fsp4HI	GCNGC	3 cut(s)	76, 189, 262
FspBI	CTAG	2 cut(s)	99, 467
GluI	GCNGC	3 cut(s)	76, 189, 262
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	572
HphI	GGTGA	1 cut(s)	557
Hpy188I	TCNGA	2 cut(s)	13, 611
Hpy188III	TCNNGA	1 cut(s)	467
HpyCH4V	TGCA	3 cut(s)	61, 188, 601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 131
HpyF3I	CTNAG	1 cut(s)	149
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	220, 463, 502
LpnPI	CCDG	8 cut(s)	71, 85, 149, 192, 266, 325, 510, 611
Lsp1109I	GCAGC	2 cut(s)	87, 200
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	2 cut(s)	99, 467
MaeIII	GTNAC	3 cut(s)	152, 452, 497
MalI	GATC	3 cut(s)	222, 465, 504
MboI	GATC	3 cut(s)	220, 463, 502
MboII	GAAGA	5 cut(s)	25, 79, 455, 593, 608
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	2 cut(s)	115, 361
MlyI	GAGTC	1 cut(s)	566
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	2 cut(s)	378, 414
MwoI	GCNNNNNNNGC	2 cut(s)	99, 131
NdeII	GATC	3 cut(s)	220, 463, 502
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	3 cut(s)	106, 204, 234
NmeAIII	GCCGAG	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	77, 190, 263
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
PspN4I	GGNNCC	3 cut(s)	106, 204, 234
PstI	CTGCAG	2 cut(s)	63, 603
RsaI	GTAC	2 cut(s)	257, 596
RsaNI	GTAC	2 cut(s)	256, 595
SaqAI	TTAA	2 cut(s)	378, 414
SatI	GCNGC	3 cut(s)	76, 189, 262
Sau3AI	GATC	3 cut(s)	220, 463, 502
SchI	GAGTC	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	6 cut(s)	100, 175, 317, 427, 491, 600
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	3 cut(s)	59, 282, 599
Sse9I	AATT	2 cut(s)	115, 361
SsiI	CCGC	2 cut(s)	102, 261
SspMI	CTAG	2 cut(s)	99, 467
StyI	CCWWGG	2 cut(s)	198, 576
TaqI	TCGA	1 cut(s)	570
TasI	AATT	2 cut(s)	115, 361
TauI	GCSGC	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	378, 414
Tru9I	TTAA	2 cut(s)	378, 414
TscAI	CASTG	2 cut(s)	310, 529
TseI	GCWGC	2 cut(s)	75, 188
TspDTI	ATGAA	2 cut(s)	343, 489
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	310, 529
XbaI	TCTAGA	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	2 cut(s)	99, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.