Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Reverse (-)

44597865 .. 44598239

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG337400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGACTTCCTCTGCAAAAGCTCTCCCATTTTTCTTTCTTCTAGTGCTTTTCTCTTCTCTTCAAGTTGAAGCTAGACAGAGATTGTTCTTCAGCAAAGTCACCCACAGTAATGGGAATGAGCCCCAGATACCGGTCACAGAAGATCCAGCAACACCAACACCATCATATGCACCCACATATACACCAACATATTCACCATTATATGGACCAACATATGCACCAGCACCAGCACCAGAATTAACAGTAGCAGAGTCACCAGAAGGAGGAGCACCAGTACTTGTACCAGCACCGGCACCCAGGGACGGAGCTACTCAAGGGCCTGAGGGGGCCATGGCACCCCTTAACTTTTTACCTGCATATGTATTTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.08

Weight (kDa)

4.68

Isoelectric Point (pI)

63.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	361
AccB1I	GGYRCC	2 cut(s)	292, 334
AccB7I	CCANNNNNTGG	1 cut(s)	203
AclWI	GGATC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	2 cut(s)	276, 282
AfiI	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 302
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	62, 68
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	3 cut(s)	20, 71, 308
AluI	AGCT	3 cut(s)	20, 71, 308
Alw21I	GWGCWC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	317, 327
AsiGI	ACCGGT	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	206, 317, 327
AsuHPI	GGTGA	3 cut(s)	91, 186, 246
AvaII	GGWCC	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	321
BanI	GGYRCC	2 cut(s)	292, 334
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	271
BccI	CCATC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	298
BfaI	CTAG	2 cut(s)	41, 72
BfuAI	ACCTGC	1 cut(s)	361
BmcAI	AGTACT	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	3 cut(s)	206, 317, 327
BmiI	GGNNCC	3 cut(s)	294, 328, 336
BmrFI	CCNGG	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	297
BsaJI	CCNNGG	3 cut(s)	296, 297, 330
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 302
Bse118I	RCCGGY	2 cut(s)	130, 289
Bse1I	ACTGG	1 cut(s)	272
Bse21I	CCTNAGG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	3 cut(s)	296, 297, 330
BseLI	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 302
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	319, 329
BshNI	GGYRCC	2 cut(s)	292, 334
BshTI	ACCGGT	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	131, 290
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	4 cut(s)	130, 203, 263, 302
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	319, 329
Bsp1286I	GDGCHC	2 cut(s)	123, 271
Bsp143I	GATC	1 cut(s)	142
Bsp19I	CCATGG	1 cut(s)	330
BspANI	GGCC	2 cut(s)	319, 329
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	3 cut(s)	294, 328, 336
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	2 cut(s)	292, 334
BsrFI	RCCGGY	2 cut(s)	130, 289
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	2 cut(s)	130, 289
BssECI	CCNNGG	3 cut(s)	296, 297, 330
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	2 cut(s)	107, 244
Bst6I	CTCTTC	2 cut(s)	58, 63
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	142
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	319, 329
BtgI	CCRYGG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	361
Cfr10I	RCCGGY	2 cut(s)	130, 289
Cfr13I	GGNCC	3 cut(s)	206, 317, 327
Csp6I	GTAC	2 cut(s)	275, 281
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	6 cut(s)	20, 71, 121, 308, 319, 329
CviKI_1	RGCY	6 cut(s)	20, 71, 121, 308, 319, 329
CviQI	GTAC	2 cut(s)	275, 281
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	58, 63
EarI	CTCTTC	2 cut(s)	58, 63
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	73
Eco81I	CCTNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	1 cut(s)	334
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	1 cut(s)	330
FauNDI	CATATG	3 cut(s)	166, 214, 358
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	41, 72
HaeIII	GGCC	2 cut(s)	319, 329
HapII	CCGG	2 cut(s)	131, 290
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	2 cut(s)	131, 290
HphI	GGTGA	3 cut(s)	91, 186, 246
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	107, 244
HpyCH4V	TGCA	4 cut(s)	14, 170, 218, 356
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	266, 305
MaeI	CTAG	2 cut(s)	41, 72
MaeIII	GTNAC	3 cut(s)	97, 133, 252
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	5 cut(s)	29, 45, 50, 79, 152
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	123, 271
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	3 cut(s)	19, 257, 316
MseI	TTAA	2 cut(s)	239, 342
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	2 cut(s)	131, 290
MspR9I	CCNGG	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	298
NcoI	CCATGG	1 cut(s)	330
NdeI	CATATG	3 cut(s)	166, 214, 358
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	3 cut(s)	294, 328, 336
NmuCI	GTSAC	3 cut(s)	97, 133, 252
PasI	CCCWGGG	1 cut(s)	297
PflMI	CCANNNNNTGG	1 cut(s)	203
PinAI	ACCGGT	1 cut(s)	130
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	3 cut(s)	294, 328, 336
PspPI	GGNCC	3 cut(s)	206, 317, 327
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	2 cut(s)	276, 282
RsaNI	GTAC	2 cut(s)	275, 281
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	239, 342
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	3 cut(s)	206, 317, 327
ScaI	AGTACT	1 cut(s)	276
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	2 cut(s)	123, 271
SetI	ASST	4 cut(s)	22, 73, 310, 355
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	1 cut(s)	236
SspMI	CTAG	2 cut(s)	41, 72
StyD4I	CCNGG	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	107, 244
TasI	AATT	1 cut(s)	236
TatI	WGTACW	1 cut(s)	274
Tru1I	TTAA	2 cut(s)	239, 342
Tru9I	TTAA	2 cut(s)	239, 342
TseFI	GTSAC	3 cut(s)	97, 133, 252
Tsp45I	GTSAC	3 cut(s)	97, 133, 252
TspGWI	ACGGA	1 cut(s)	318
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	206
XspI	CTAG	2 cut(s)	41, 72
ZrmI	AGTACT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.