Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Reverse (-)

46963699 .. 46964922

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG327000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACTTCCTCTGCAAAAGCTCTCCCATTTTTCTTTCTTCTAGTGCTTTTCTCTTCTCTTCAAGTTGAAGCTAGACAGAGATTGTTCTTCAGCAAAGTCACCCACAGTAATGGGAATGAGCCCCAGATACCGGTCACAGAAGATCCAGCAACACCAACACCAACACCATCATATGCAACCACATATACACCAACATATTCACCATTATATGGACCAACATATGCACCAGCACCAGCACCAGAATTAACAGTAGCAGAGTCACCAGAAGGAGGAGCACCACTTGTACCAGCACCGGCACCGTTTGATTCTGAACCAGAGTTCGGCTATGAGCTATATGGTTCTGCCGATCAGGAGACACCAACCACCATTGATGTCCAAAATGAAGTTGCAACTCAAGAAAATGGTCATTATGAAAATACCAACTTGTACAACGACAACAGTAAGTACGCGACCAATTACAACAGCGATGGATACACCACCAACTACATCAATGGCAGAGAAGGCTTTACCAACAGCTATTACAGTAATGGCAATGGAAACAGCGTTGATGGGTTTGAACAGCAAGGGATGAGTGACACAAGGTTTATGGAAAATGGAAGCTACTATCAGGACAATGACGTGAAGAATGAGAATAATGACAAGTTGAATGGGTACCAGTCCGGGAGAGGAAGCACTACAAATGAAGCGTATTTAGGTAACAGTGAGAAGCCCAATGAGTTCAACACCATGGAGGAGTATGAGAAGTACCAGGAGAACCAAGGATATGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.51

Weight (kDa)

4.15

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	651
AccB1I	GGYRCC	2 cut(s)	295, 651
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccII	CGCG	1 cut(s)	449
AclWI	GGATC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	5 cut(s)	285, 428, 446, 653, 746
AfiI	CCNNNNNNNGG	4 cut(s)	130, 209, 269, 320
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	5 cut(s)	62, 68, 557, 646, 721
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	1 cut(s)	747
AluBI	AGCT	5 cut(s)	20, 71, 331, 516, 600
AluI	AGCT	5 cut(s)	20, 71, 331, 516, 600
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	137
AsiGI	ACCGGT	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	3 cut(s)	91, 192, 252
AvaII	GGWCC	1 cut(s)	212
BanI	GGYRCC	2 cut(s)	295, 651
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	277
BccI	CCATC	3 cut(s)	175, 461, 542
BciT130I	CCWGG	1 cut(s)	749
BciVI	GTATCC	1 cut(s)	464
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	41, 72
BfuI	GTATCC	1 cut(s)	464
Bme1390I	CCNGG	2 cut(s)	661, 749
Bme18I	GGWCC	1 cut(s)	212
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	297, 653
BmrFI	CCNGG	2 cut(s)	661, 749
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	661
BsaJI	CCNNGG	2 cut(s)	726, 757
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 209, 269, 320
Bse118I	RCCGGY	2 cut(s)	130, 292
Bse1I	ACTGG	1 cut(s)	655
Bse3DI	GCAATG	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	749
BseDI	CCNNGG	2 cut(s)	726, 757
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	4 cut(s)	130, 209, 269, 320
BseMI	GCAATG	1 cut(s)	538
BseNI	ACTGG	1 cut(s)	655
BseRI	GAGGAG	2 cut(s)	285, 746
Bsh1236I	CGCG	1 cut(s)	449
BshNI	GGYRCC	2 cut(s)	295, 651
BshTI	ACCGGT	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	131, 293, 660
BslI	CCNNNNNNNGG	4 cut(s)	130, 209, 269, 320
BsmAI	GTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	123, 277
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	142, 346
Bsp19I	CCATGG	1 cut(s)	726
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	297, 653
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	2 cut(s)	295, 651
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	2 cut(s)	130, 292
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	655
BssAI	RCCGGY	2 cut(s)	130, 292
BssECI	CCNNGG	2 cut(s)	726, 757
BssMI	GATC	2 cut(s)	142, 346
BssT1I	CCWWGG	2 cut(s)	726, 757
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	6 cut(s)	107, 250, 300, 440, 524, 701
Bst6I	CTCTTC	2 cut(s)	58, 63
BstAUI	TGTACA	1 cut(s)	426
BstDSI	CCRYGG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	573
BstFNI	CGCG	1 cut(s)	449
BstKTI	GATC	2 cut(s)	145, 349
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	142, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstNI	CCWGG	1 cut(s)	749
BstSCI	CCNGG	2 cut(s)	659, 747
BstUI	CGCG	1 cut(s)	449
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	464
BtgI	CCRYGG	1 cut(s)	726
BtgZI	GCGATG	1 cut(s)	480
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	706
Cfr10I	RCCGGY	2 cut(s)	130, 292
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	5 cut(s)	284, 427, 445, 652, 745
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	1 cut(s)	727
CviJI	RGCY	9 cut(s)	20, 71, 121, 324, 331, 504, 516, 600, 709
CviKI_1	RGCY	9 cut(s)	20, 71, 121, 324, 331, 504, 516, 600, 709
CviQI	GTAC	5 cut(s)	284, 427, 445, 652, 745
DpnI	GATC	2 cut(s)	144, 348
DpnII	GATC	2 cut(s)	142, 346
Eam1104I	CTCTTC	2 cut(s)	58, 63
EarI	CTCTTC	2 cut(s)	58, 63
Eco130I	CCWWGG	2 cut(s)	726, 757
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	747
EcoT14I	CCWWGG	2 cut(s)	726, 757
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	2 cut(s)	726, 757
FaeI	CATG	1 cut(s)	730
FatI	CATG	1 cut(s)	726
FauNDI	CATATG	2 cut(s)	172, 220
FokI	GGATG	1 cut(s)	580
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	41, 72
HapII	CCGG	3 cut(s)	131, 293, 660
Hin1II	CATG	1 cut(s)	730
HinfI	GANTC	2 cut(s)	257, 305
HpaII	CCGG	3 cut(s)	131, 293, 660
HphI	GGTGA	3 cut(s)	91, 192, 252
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	3 cut(s)	350, 395, 608
HpyAV	CCTTC	2 cut(s)	260, 494
HpyCH4III	ACNGT	6 cut(s)	107, 250, 300, 440, 524, 701
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	4 cut(s)	14, 176, 224, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	1 cut(s)	730
KpnI	GGTACC	1 cut(s)	655
Kzo9I	GATC	2 cut(s)	142, 346
LmnI	GCTCC	1 cut(s)	272
MaeI	CTAG	2 cut(s)	41, 72
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	5 cut(s)	97, 133, 258, 572, 695
MalI	GATC	2 cut(s)	144, 348
MboI	GATC	2 cut(s)	142, 346
MboII	GAAGA	6 cut(s)	29, 45, 50, 79, 152, 634
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	123, 277
MluCI	AATT	2 cut(s)	242, 454
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	4 cut(s)	19, 263, 659, 724
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	3 cut(s)	131, 293, 660
MspR9I	CCNGG	2 cut(s)	661, 749
MvaI	CCWGG	1 cut(s)	749
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	501
NciI	CCSGG	1 cut(s)	661
NcoI	CCATGG	1 cut(s)	726
NdeI	CATATG	2 cut(s)	172, 220
NdeII	GATC	2 cut(s)	142, 346
NlaIII	CATG	1 cut(s)	730
NlaIV	GGNNCC	2 cut(s)	297, 653
NmuCI	GTSAC	4 cut(s)	97, 133, 258, 572
PfeI	GAWTC	1 cut(s)	305
PflMI	CCANNNNNTGG	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	659
PinAI	ACCGGT	1 cut(s)	130
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	747
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	2 cut(s)	297, 653
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	5 cut(s)	285, 428, 446, 653, 746
RsaNI	GTAC	5 cut(s)	284, 427, 445, 652, 745
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	245
Sau3AI	GATC	2 cut(s)	142, 346
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	661, 749
SduI	GDGCHC	2 cut(s)	123, 277
SetI	ASST	8 cut(s)	22, 73, 333, 518, 584, 602, 621, 697
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	2 cut(s)	242, 454
SspMI	CTAG	2 cut(s)	41, 72
StyD4I	CCNGG	2 cut(s)	659, 747
StyI	CCWWGG	2 cut(s)	726, 757
TaaI	ACNGT	6 cut(s)	107, 250, 300, 440, 524, 701
TaiI	ACGT	1 cut(s)	621
TasI	AATT	2 cut(s)	242, 454
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	4 cut(s)	97, 133, 258, 572
Tsp45I	GTSAC	4 cut(s)	97, 133, 258, 572
TspDTI	ATGAA	3 cut(s)	396, 426, 696
TspRI	CASTG	1 cut(s)	706
Van91I	CCANNNNNTGG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	212
XspI	CTAG	2 cut(s)	41, 72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.