Rmu_sc0005608.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005608.1
OG0006365
Physical Location & Seq
Forward (+)
110724 .. 111347
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005608.1_g000022.1.cds

Sequence Viewer

Length: 624 bp
atggcttccttcgtgaaaacaatctcatttttcatccttctggtgcttttcacctctctgcaaattgaagccagcgacagattgttcttcagcaaagttagcggttccaataacaacaattacaatgccaaggatcccaagatcccccttagttaccaacaagaggctaaaccttcaccagaagttgcagcactaacaacccaggcacaaaaagtggctgttgatccaccaaagaaaccaatattctctcgcaacgaatatgaaagcttattcggtcctacagatgacacatcggctgccattggtaccagctcaaacagcgacaatggcaagcaaaacaacaaaaatggggataacttcatttacaatacggaaagtgacttcaatggcaatggcaatggcgatgacaacataggggatgagattaagcagcaagggctcagtgatacaaggtttttggaacatggtcgctacattaatgttgataaaaataggttcgatgatactgcacggagaggaagcgctggtaatgagggttttgatggcaagatcgggaagcagaacgagttcgactccttggaggaatatgagaagtacctacagaggaacggatatcttccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.02

Weight (kDa)

4.85

Isoelectric Point (pI)

26.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 305
AciI CCGC 1 cut(s) 102
AclWI GGATC 4 cut(s) 128, 136, 141, 218
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 2 cut(s) 307, 596
AfeI AGCGCT 1 cut(s) 523
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 2 cut(s) 68, 385
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 2 cut(s) 267, 312
AluI AGCT 2 cut(s) 267, 312
AlwI GGATC 4 cut(s) 128, 136, 141, 218
Aor51HI AGCGCT 1 cut(s) 523
ApeKI GCWGC 3 cut(s) 188, 296, 430
AseI ATTAAT 1 cut(s) 477
Asp700I GAANNNNTTC 1 cut(s) 566
Asp718I GGTACC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 43, 168
AvaII GGWCC 1 cut(s) 275
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 200, 283, 442
BccI CCATC 1 cut(s) 536
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 1 cut(s) 203
BfmI CTRYAG 2 cut(s) 279, 599
BfoI RGCGCY 1 cut(s) 525
BisI GCNGC 3 cut(s) 189, 297, 431
BlsI GCNGC 3 cut(s) 190, 298, 432
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 106, 135, 307
BmrFI CCNGG 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BsaJI CCNNGG 3 cut(s) 129, 201, 576
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse3DI GCAATG 2 cut(s) 397, 403
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 3 cut(s) 129, 201, 576
BseGI GGATG 2 cut(s) 33, 424
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 2 cut(s) 397, 403
BseMII CTCAG 1 cut(s) 454
BseXI GCAGC 3 cut(s) 200, 283, 442
BsgI GTGCAG 1 cut(s) 492
BshNI GGYRCC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 4 cut(s) 133, 141, 223, 549
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 453
BspLI GGNNCC 3 cut(s) 106, 135, 307
BspPI GGATC 4 cut(s) 128, 136, 141, 218
BspT107I GGYRCC 1 cut(s) 305
BsrDI GCAATG 2 cut(s) 397, 403
BssECI CCNNGG 3 cut(s) 129, 201, 576
BssMI GATC 4 cut(s) 133, 141, 223, 549
BssT1I CCWWGG 2 cut(s) 129, 576
Bst2UI CCWGG 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 73, 332
BstDEI CTNAG 2 cut(s) 149, 440
BstF5I GGATG 2 cut(s) 33, 424
BstH2I RGCGCY 1 cut(s) 525
BstHHI GCGC 1 cut(s) 524
BstKTI GATC 4 cut(s) 136, 144, 226, 552
BstMBI GATC 4 cut(s) 133, 141, 223, 549
BstMWI GCNNNNNNNGC 4 cut(s) 99, 318, 327, 436
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 2 cut(s) 279, 599
BstV1I GCAGC 3 cut(s) 200, 283, 442
BstX2I RGATCY 2 cut(s) 133, 141
BstYI RGATCY 2 cut(s) 133, 141
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 33, 424
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 2 cut(s) 73, 332
CfoI GCGC 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 306, 595
CviAII CATG 1 cut(s) 464
CviJI RGCY 8 cut(s) 5, 71, 167, 218, 267, 296, 312, 439
CviKI_1 RGCY 8 cut(s) 5, 71, 167, 218, 267, 296, 312, 439
CviQI GTAC 2 cut(s) 306, 595
DdeI CTNAG 2 cut(s) 149, 440
DpnI GATC 4 cut(s) 135, 143, 225, 551
DpnII GATC 4 cut(s) 133, 141, 223, 549
Eco130I CCWWGG 2 cut(s) 129, 576
Eco24I GRGCYC 1 cut(s) 441
Eco32I GATATC 1 cut(s) 614
Eco47I GGWCC 1 cut(s) 275
Eco47III AGCGCT 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 201
EcoRV GATATC 1 cut(s) 614
EcoT14I CCWWGG 2 cut(s) 129, 576
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 2 cut(s) 129, 576
FaeI CATG 1 cut(s) 467
FaiI YATR 4 cut(s) 261, 413, 465, 588
FatI CATG 1 cut(s) 463
Fnu4HI GCNGC 3 cut(s) 189, 297, 431
FokI GGATG 2 cut(s) 20, 431
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 3 cut(s) 189, 297, 431
GlaI GCGC 1 cut(s) 523
GluI GCNGC 3 cut(s) 189, 297, 431
HaeII RGCGCY 1 cut(s) 525
HhaI GCGC 1 cut(s) 524
Hin1II CATG 1 cut(s) 467
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 1 cut(s) 572
HphI GGTGA 2 cut(s) 43, 168
Hpy188III TCNNGA 2 cut(s) 13, 553
HpyAV CCTTC 3 cut(s) 19, 47, 183
HpyCH4V TGCA 3 cut(s) 61, 188, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 318, 327, 436
HpyF3I CTNAG 2 cut(s) 149, 440
Hsp92II CATG 1 cut(s) 467
HspAI GCGC 1 cut(s) 522
KpnI GGTACC 1 cut(s) 309
Kzo9I GATC 4 cut(s) 133, 141, 223, 549
LpnPI CCDG 7 cut(s) 26, 85, 188, 192, 215, 322, 510
Lsp1109I GCAGC 3 cut(s) 200, 283, 442
MaeIII GTNAC 2 cut(s) 152, 377
MalI GATC 4 cut(s) 135, 143, 225, 551
MboI GATC 4 cut(s) 133, 141, 223, 549
MboII GAAGA 2 cut(s) 79, 608
MflI RGATCY 2 cut(s) 133, 141
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 2 cut(s) 63, 118
MlyI GAGTC 1 cut(s) 566
MnlI CCTC 6 cut(s) 64, 157, 509, 526, 574, 597
MroXI GAANNNNTTC 1 cut(s) 566
MseI TTAA 2 cut(s) 426, 477
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 4 cut(s) 99, 318, 327, 436
NdeII GATC 4 cut(s) 133, 141, 223, 549
NlaIII CATG 1 cut(s) 467
NlaIV GGNNCC 3 cut(s) 106, 135, 307
NmuCI GTSAC 1 cut(s) 377
PdmI GAANNNNTTC 1 cut(s) 566
PkrI GCNGC 3 cut(s) 190, 298, 432
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PshBI ATTAAT 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 106, 135, 307
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 2 cut(s) 133, 141
RsaI GTAC 2 cut(s) 307, 596
RsaNI GTAC 2 cut(s) 306, 595
SaqAI TTAA 2 cut(s) 426, 477
SatI GCNGC 3 cut(s) 189, 297, 431
Sau3AI GATC 4 cut(s) 133, 141, 223, 549
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 441
SetI ASST 7 cut(s) 56, 175, 269, 314, 455, 497, 600
SfcI CTRYAG 2 cut(s) 279, 599
SinI GGWCC 1 cut(s) 275
Sse9I AATT 2 cut(s) 63, 118
SsiI CCGC 1 cut(s) 102
SspI AATATT 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 2 cut(s) 129, 576
TaqI TCGA 2 cut(s) 498, 570
TaqII GACCGA 1 cut(s) 263
TasI AATT 2 cut(s) 63, 118
Tru1I TTAA 2 cut(s) 426, 477
Tru9I TTAA 2 cut(s) 426, 477
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 3 cut(s) 188, 296, 430
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 22, 276, 349
TspGWI ACGGA 3 cut(s) 386, 526, 624
TspRI CASTG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.