Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Reverse (-)

20335860 .. 20336843

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTTCATTTGCAAAAGCTCTCCCATGTTTCTTCCTTCTAGTGCTTTTCTCTTCTCTTCAAGTTGAAGCTAGACAGAGATTGTTCTTCAGCAAAATCACCCACAATAATGGGAATGAGCCCGATATCCCAGTCACAGAAGATCCAGAAACACCTACACCTACACCATCATATACACCAACATATTCACCTTTATATGGACCAACGTATGCACCAGCACCAGAATTAACAGTGGCAGATGCACCTTTATATGGACCAACATATGCACCAGCACCAGAATTAACAGTGGCAGATGCACCAGAAGAAGGAGCACCACTTGCACCGGCACCGGCACCGGCACCGTCTGATTCTGAACCAGAGTTGGGCTATGAGCTATATGGTTCTGCGGATCAGGAGACACCAACCACCATGGATGTCCAAAATGAAGTTACGACTCAAGAAAATGGTCGTTATGAAAATACCAACTTGTACAACGACAACAGTAACTACGCGACCAATTACAACACCGACAGATACACCACAAACTACATCAATGGCAGAGAAGGCTCTACCAACAGCTATTACAGTAATGACAATGGAAACAGCGTTGATGGGTTTGAACAGCAAGGCATGAGTGACACAAGGATTCTGGAAAATGGAAGCTACTATCAGGATGATGTTGTGAAGAATAAGAATAATGATGAGTTTAATGGGTACCAGTCCGGGAGAGGAAGCACTACAAATGAAGTGTATTTTGGTAACAATGAGAAGCCCAATGAGTTCAACACCATGGAGGAGTATGAGAAGTACCAGGAGAACCAAGGATATGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.11

Weight (kDa)

4.05

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	693
AccB1I	GGYRCC	4 cut(s)	325, 331, 337, 693
AccII	CGCG	1 cut(s)	491
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	2 cut(s)	137, 396
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	3 cut(s)	470, 695, 788
AfiI	CCNNNNNNNGG	4 cut(s)	197, 251, 305, 362
AgsI	TTSAA	4 cut(s)	62, 68, 599, 763
AjnI	CCWGG	1 cut(s)	789
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AluBI	AGCT	5 cut(s)	20, 71, 373, 558, 642
AluI	AGCT	5 cut(s)	20, 71, 373, 558, 642
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	2 cut(s)	137, 396
Asp718I	GGTACC	1 cut(s)	693
AspS9I	GGNCC	2 cut(s)	200, 254
AsuC2I	CCSGG	1 cut(s)	703
AsuHPI	GGTGA	2 cut(s)	91, 180
AvaII	GGWCC	2 cut(s)	200, 254
BanI	GGYRCC	4 cut(s)	325, 331, 337, 693
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	313
BccI	CCATC	2 cut(s)	175, 584
BciT130I	CCWGG	1 cut(s)	791
BcnI	CCSGG	1 cut(s)	703
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	2 cut(s)	41, 72
Bme1390I	CCNGG	2 cut(s)	703, 791
Bme18I	GGWCC	2 cut(s)	200, 254
BmgT120I	GGNCC	2 cut(s)	200, 254
BmiI	GGNNCC	4 cut(s)	327, 333, 339, 695
BmrFI	CCNGG	2 cut(s)	703, 791
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	229, 283
BmuI	ACTGGG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	703
BsaJI	CCNNGG	3 cut(s)	408, 768, 799
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 251, 305, 362
Bse118I	RCCGGY	3 cut(s)	322, 328, 334
Bse1I	ACTGG	2 cut(s)	131, 697
BseBI	CCWGG	1 cut(s)	791
BseDI	CCNNGG	3 cut(s)	408, 768, 799
BseGI	GGATG	2 cut(s)	418, 658
BseLI	CCNNNNNNNGG	4 cut(s)	197, 251, 305, 362
BseNI	ACTGG	2 cut(s)	131, 697
BseRI	GAGGAG	1 cut(s)	788
Bsh1236I	CGCG	1 cut(s)	491
BshNI	GGYRCC	4 cut(s)	325, 331, 337, 693
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	4 cut(s)	323, 329, 335, 702
BslI	CCNNNNNNNGG	4 cut(s)	197, 251, 305, 362
BsmAI	GTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	123, 313
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	2 cut(s)	142, 388
Bsp19I	CCATGG	2 cut(s)	408, 768
BspACI	CCGC	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	4 cut(s)	327, 333, 339, 695
BspPI	GGATC	2 cut(s)	137, 396
BspT107I	GGYRCC	4 cut(s)	325, 331, 337, 693
BsrFI	RCCGGY	3 cut(s)	322, 328, 334
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	131, 697
BssAI	RCCGGY	3 cut(s)	322, 328, 334
BssECI	CCNNGG	3 cut(s)	408, 768, 799
BssMI	GATC	2 cut(s)	142, 388
BssT1I	CCWWGG	3 cut(s)	408, 768, 799
Bst2UI	CCWGG	1 cut(s)	791
Bst4CI	ACNGT	5 cut(s)	232, 286, 342, 482, 566
Bst6I	CTCTTC	2 cut(s)	58, 63
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	468
BstDSI	CCRYGG	2 cut(s)	408, 768
BstF5I	GGATG	2 cut(s)	418, 658
BstFNI	CGCG	1 cut(s)	491
BstKTI	GATC	2 cut(s)	145, 391
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	142, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 317, 543
BstNI	CCWGG	1 cut(s)	791
BstSCI	CCNGG	2 cut(s)	701, 789
BstUI	CGCG	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	142
BtgI	CCRYGG	2 cut(s)	408, 768
BtsCI	GGATG	2 cut(s)	418, 658
BtsIMutI	CAGTG	2 cut(s)	237, 291
Cfr10I	RCCGGY	3 cut(s)	322, 328, 334
Cfr13I	GGNCC	2 cut(s)	200, 254
Csp6I	GTAC	3 cut(s)	469, 694, 787
CviAII	CATG	4 cut(s)	27, 409, 610, 769
CviQI	GTAC	3 cut(s)	469, 694, 787
DpnI	GATC	2 cut(s)	144, 390
DpnII	GATC	2 cut(s)	142, 388
Eam1104I	CTCTTC	2 cut(s)	58, 63
EarI	CTCTTC	2 cut(s)	58, 63
Eco130I	CCWWGG	3 cut(s)	408, 768, 799
Eco24I	GRGCYC	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	200, 254
Eco57I	CTGAAG	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	789
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	3 cut(s)	408, 768, 799
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	3 cut(s)	408, 768, 799
FaeI	CATG	4 cut(s)	30, 412, 613, 772
FatI	CATG	4 cut(s)	26, 408, 609, 768
FauNDI	CATATG	1 cut(s)	262
FokI	GGATG	2 cut(s)	425, 665
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	41, 72
HapII	CCGG	4 cut(s)	323, 329, 335, 702
Hin1II	CATG	4 cut(s)	30, 412, 613, 772
HinfI	GANTC	3 cut(s)	347, 433, 625
HpaII	CCGG	4 cut(s)	323, 329, 335, 702
HphI	GGTGA	2 cut(s)	91, 180
Hpy188I	TCNGA	2 cut(s)	346, 352
Hpy188III	TCNNGA	5 cut(s)	146, 392, 437, 629, 650
HpyAV	CCTTC	3 cut(s)	47, 299, 536
HpyCH4III	ACNGT	5 cut(s)	232, 286, 342, 482, 566
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	6 cut(s)	14, 212, 242, 266, 296, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 317, 543
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	4 cut(s)	30, 412, 613, 772
KpnI	GGTACC	1 cut(s)	697
Kzo9I	GATC	2 cut(s)	142, 388
LmnI	GCTCC	1 cut(s)	308
LweI	GCATC	2 cut(s)	229, 283
MaeI	CTAG	2 cut(s)	41, 72
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	5 cut(s)	133, 427, 482, 614, 737
MalI	GATC	2 cut(s)	144, 390
MboI	GATC	2 cut(s)	142, 388
MboII	GAAGA	7 cut(s)	25, 45, 50, 79, 152, 314, 676
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	123, 313
MluCI	AATT	3 cut(s)	224, 278, 496
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	2 cut(s)	701, 766
MseI	TTAA	3 cut(s)	227, 281, 687
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	4 cut(s)	323, 329, 335, 702
MspR9I	CCNGG	2 cut(s)	703, 791
MvaI	CCWGG	1 cut(s)	791
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	3 cut(s)	11, 317, 543
NciI	CCSGG	1 cut(s)	703
NcoI	CCATGG	2 cut(s)	408, 768
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	2 cut(s)	142, 388
NlaIII	CATG	4 cut(s)	30, 412, 613, 772
NlaIV	GGNNCC	4 cut(s)	327, 333, 339, 695
NmuCI	GTSAC	2 cut(s)	133, 614
PfeI	GAWTC	2 cut(s)	347, 625
PfoI	TCCNGGA	1 cut(s)	701
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	789
PspGI	CCWGG	1 cut(s)	789
PspN4I	GGNNCC	4 cut(s)	327, 333, 339, 695
PspPI	GGNCC	2 cut(s)	200, 254
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	3 cut(s)	470, 695, 788
RsaNI	GTAC	3 cut(s)	469, 694, 787
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	227, 281, 687
Sau3AI	GATC	2 cut(s)	142, 388
Sau96I	GGNCC	2 cut(s)	200, 254
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	703, 791
SduI	GDGCHC	2 cut(s)	123, 313
SfaNI	GCATC	2 cut(s)	229, 283
SinI	GGWCC	2 cut(s)	200, 254
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	3 cut(s)	224, 278, 496
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	2 cut(s)	41, 72
StyD4I	CCNGG	2 cut(s)	701, 789
StyI	CCWWGG	3 cut(s)	408, 768, 799
TaaI	ACNGT	5 cut(s)	232, 286, 342, 482, 566
TaiI	ACGT	1 cut(s)	209
TasI	AATT	3 cut(s)	224, 278, 496
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	2 cut(s)	347, 625
Tru1I	TTAA	3 cut(s)	227, 281, 687
Tru9I	TTAA	3 cut(s)	227, 281, 687
TscAI	CASTG	2 cut(s)	237, 291
TseFI	GTSAC	2 cut(s)	133, 614
Tsp45I	GTSAC	2 cut(s)	133, 614
TspDTI	ATGAA	3 cut(s)	438, 468, 738
TspRI	CASTG	2 cut(s)	237, 291
VpaK11BI	GGWCC	2 cut(s)	200, 254
XspI	CTAG	2 cut(s)	41, 72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.