RLG00000024057

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006365
Physical Location & Seq
Forward (+)
31300631 .. 31301948
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024057

Sequence Viewer

Length: 630 bp
ATGGCTTCCTTCGTGAAAACACTCTCATTTTTCATCCTTCTGGTGCTTTTCACCTCTCTGCAAATTGAAGCCAGCGACAGATTGTTCTTCAGCAAAGTTAGCGGTTCCAACAACAATTACAATGCCAAGGATCCCAAGATCCCCCTTAGTTACCAACAAGAGGCTAAACCTTCACCAGAAGTTGCAGCACTAACAACCCAGGCACAAAAAGTGGCTGTTGATCCACCAAAGAAACCAATGTTCTCTCGCAACCAATATGAAAGCTTATTCGGTTCTACAGATGACACATCGGCTGCCATTGGTACCAGCTCAAACAGCGACAATGGCAAGAAAAACAACAGAAATGGGGATAACTTCATTTACAATATGGAAAGTGACTTCAATGGCAATGGCAATGGCAATGGCGATGACAACATCTCGGATGAGATTAAACAGCAAGGGCTCAGTGATACAAGGTTTTTGGAACATGGTCGTTACGTTGTTGATAAAAATAGGTTCAATGGTAAAGATACTGCACGGAGAGGAAGCACTGGTAATGAGGGTTTTGATGGCAAGAGGGGGAAGCAGAACGAGTTCGACTCCTTGGAGGAATATGAGAAGTACCTGCAAAGGACCGGATATCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.29

Weight (kDa)

5.57

Isoelectric Point (pI)

21.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 612
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AciI CCGC 1 cut(s) 102
AclWI GGATC 4 cut(s) 125, 133, 138, 215
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 2 cut(s) 304, 602
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 3 cut(s) 68, 382, 499
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 2 cut(s) 264, 309
AluI AGCT 2 cut(s) 264, 309
AlwI GGATC 4 cut(s) 125, 133, 138, 215
ApeKI GCWGC 2 cut(s) 185, 293
Asp700I GAANNNNTTC 1 cut(s) 572
Asp718I GGTACC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 612
AsuHPI GGTGA 2 cut(s) 43, 165
AvaII GGWCC 1 cut(s) 612
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 444
BbvI GCAGC 2 cut(s) 197, 280
BccI CCATC 1 cut(s) 542
BciT130I CCWGG 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 612
BisI GCNGC 2 cut(s) 186, 294
BlsI GCNGC 2 cut(s) 187, 295
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 612
BmgT120I GGNCC 1 cut(s) 612
BmiI GGNNCC 3 cut(s) 106, 132, 304
BmrFI CCNGG 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 563, 595
BsaJI CCNNGG 3 cut(s) 126, 198, 582
BsaWI WCCGGW 1 cut(s) 614
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 535
Bse3DI GCAATG 3 cut(s) 394, 400, 406
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 126, 198, 582
BseGI GGATG 2 cut(s) 33, 427
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 3 cut(s) 394, 400, 406
BseMII CTCAG 1 cut(s) 457
BseNI ACTGG 1 cut(s) 535
BseXI GCAGC 2 cut(s) 197, 280
BsgI GTGCAG 1 cut(s) 498
BshNI GGYRCC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 615
BslI CCNNNNNNNGG 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 3 cut(s) 130, 138, 220
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 456
BspLI GGNNCC 3 cut(s) 106, 132, 304
BspMI ACCTGC 1 cut(s) 612
BspPI GGATC 4 cut(s) 125, 133, 138, 215
BspT107I GGYRCC 1 cut(s) 302
BsrDI GCAATG 3 cut(s) 394, 400, 406
BsrI ACTGG 1 cut(s) 535
BssECI CCNNGG 3 cut(s) 126, 198, 582
BssMI GATC 3 cut(s) 130, 138, 220
BssT1I CCWWGG 2 cut(s) 126, 582
Bst2UI CCWGG 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 146, 443
BstF5I GGATG 2 cut(s) 33, 427
BstKTI GATC 3 cut(s) 133, 141, 223
BstMBI GATC 3 cut(s) 130, 138, 220
BstMWI GCNNNNNNNGC 3 cut(s) 99, 315, 324
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 197, 280
BstX2I RGATCY 2 cut(s) 130, 138
BstYI RGATCY 2 cut(s) 130, 138
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 2 cut(s) 33, 427
BtsIMutI CAGTG 2 cut(s) 451, 528
BveI ACCTGC 1 cut(s) 612
Cac8I GCNNGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 612
Csp6I GTAC 2 cut(s) 303, 601
CviAII CATG 1 cut(s) 467
CviJI RGCY 8 cut(s) 5, 71, 164, 215, 264, 293, 309, 442
CviKI_1 RGCY 8 cut(s) 5, 71, 164, 215, 264, 293, 309, 442
CviQI GTAC 2 cut(s) 303, 601
DdeI CTNAG 2 cut(s) 146, 443
DpnI GATC 3 cut(s) 132, 140, 222
DpnII GATC 3 cut(s) 130, 138, 220
Eco130I CCWWGG 2 cut(s) 126, 582
Eco24I GRGCYC 1 cut(s) 444
Eco32I GATATC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 612
Eco57I CTGAAG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 620
EcoT14I CCWWGG 2 cut(s) 126, 582
EcoT38I GRGCYC 1 cut(s) 444
ErhI CCWWGG 2 cut(s) 126, 582
FaeI CATG 1 cut(s) 470
FaiI YATR 4 cut(s) 258, 368, 468, 594
FatI CATG 1 cut(s) 466
Fnu4HI GCNGC 2 cut(s) 186, 294
FokI GGATG 2 cut(s) 20, 434
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 2 cut(s) 186, 294
GluI GCNGC 2 cut(s) 186, 294
HapII CCGG 1 cut(s) 615
Hin1II CATG 1 cut(s) 470
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 1 cut(s) 578
HpaII CCGG 1 cut(s) 615
HphI GGTGA 2 cut(s) 43, 165
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 3 cut(s) 19, 47, 180
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 4 cut(s) 61, 185, 515, 607
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 315, 324
HpyF3I CTNAG 2 cut(s) 146, 443
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 1 cut(s) 470
KpnI GGTACC 1 cut(s) 306
Kzo9I GATC 3 cut(s) 130, 138, 220
LpnPI CCDG 8 cut(s) 26, 85, 185, 189, 212, 319, 516, 617
Lsp1109I GCAGC 2 cut(s) 197, 280
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 3 cut(s) 149, 374, 473
MalI GATC 3 cut(s) 132, 140, 222
MboI GATC 3 cut(s) 130, 138, 220
MboII GAAGA 2 cut(s) 79, 614
MflI RGATCY 2 cut(s) 130, 138
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 2 cut(s) 63, 115
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 6 cut(s) 64, 154, 515, 532, 549, 580
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 1 cut(s) 429
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 99, 315, 324
NdeII GATC 3 cut(s) 130, 138, 220
NlaIII CATG 1 cut(s) 470
NlaIV GGNNCC 3 cut(s) 106, 132, 304
NmuCI GTSAC 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 572
PkrI GCNGC 2 cut(s) 187, 295
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 106, 132, 304
PspPI GGNCC 1 cut(s) 612
PsuI RGATCY 2 cut(s) 130, 138
RsaI GTAC 2 cut(s) 304, 602
RsaNI GTAC 2 cut(s) 303, 601
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 2 cut(s) 186, 294
Sau3AI GATC 3 cut(s) 130, 138, 220
Sau96I GGNCC 1 cut(s) 612
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 444
SetI ASST 8 cut(s) 56, 172, 266, 311, 458, 480, 497, 606
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 612
Sse9I AATT 2 cut(s) 63, 115
SsiI CCGC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 126, 582
TaiI ACGT 1 cut(s) 480
TaqI TCGA 1 cut(s) 576
TasI AATT 2 cut(s) 63, 115
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 2 cut(s) 451, 535
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 2 cut(s) 185, 293
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 3 cut(s) 22, 273, 346
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 2 cut(s) 451, 535
VpaK11BI GGWCC 1 cut(s) 612
XmnI GAANNNNTTC 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.