Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Reverse (-)

43826279 .. 43827225

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCACTGTCCCCTAATAACGTAGAGAATTCTTATACCGAGAATGCACATGTTGAAGCTAGACAGAGATTGTTCTTCAGCAAAGTCACCCACAGTAATGGGAATGAGCCCCAGATACCGGTCACAGAAGATCCAGCAACACCAACACCATCATATTCACCCACATATACACCAACATATTCACCATTATATGGACCAACATATGCACCAGCACCAGCACCAGAATTAACAGTAGCAGAGTCACCAGAAGGAGGAGAACCACCTGTACCATCACCGGCACCGTATGATTCTGAACCAGAGTTCGGCTATGAGCTATATGGTTCTGCCGATCAGGAGACACCAACCACCATTGATGTCCAAAATGAAGTTGCAACTCAAGAAAATGGTCATTATGAAAATACCAACTTGTACAACGACAACAGTAAGTACGCGACCAATTACAACAGCGACGGGTACACCACCAACTACATCAATGGCAGAGAAGGCTTTACCAACAGCTATTACAGTAATGGCAATGGAAACAGCATTGATGGGTTTGAACAGCAAGGGATGAGTGACACAAGGTTTCTGGAAAATGGAAGCTACTATCAGGACAATGACGTGAAGAATGAGAATAATGACAAGTTGAATGGGTACCAGTCCGGGAGAGGAAGCACTACAAATGAAGCGTATTTTGGTAACAGTGAGAAGCCCAATGAGTTCAACACCATGGAGGAGTATGAGAAGTACCAGGAGAACCAAGGATACGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

27.97

Weight (kDa)

4.1

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	633
AccB1I	GGYRCC	2 cut(s)	277, 633
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccII	CGCG	1 cut(s)	431
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	61
AfaI	GTAC	6 cut(s)	267, 410, 428, 455, 635, 728
AfiI	CCNNNNNNNGG	4 cut(s)	118, 191, 251, 302
AflIII	ACRYGT	1 cut(s)	49
AgeI	ACCGGT	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	56, 539, 628, 703
AjiI	CACGTC	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	729
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
AluBI	AGCT	4 cut(s)	59, 313, 498, 582
AluI	AGCT	4 cut(s)	59, 313, 498, 582
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	28
AsiGI	ACCGGT	1 cut(s)	118
Asp718I	GGTACC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	643
AsuHPI	GGTGA	5 cut(s)	79, 150, 174, 234, 264
AvaII	GGWCC	1 cut(s)	194
BanI	GGYRCC	2 cut(s)	277, 633
BanII	GRGCYC	1 cut(s)	111
BccI	CCATC	3 cut(s)	157, 277, 524
BciT130I	CCWGG	1 cut(s)	731
BciVI	GTATCC	1 cut(s)	737
BcnI	CCSGG	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	737
Bme1390I	CCNGG	2 cut(s)	643, 731
Bme18I	GGWCC	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	279, 635
BmrFI	CCNGG	2 cut(s)	643, 731
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	643
BsaAI	YACGTR	1 cut(s)	748
BsaJI	CCNNGG	2 cut(s)	708, 739
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 191, 251, 302
Bse118I	RCCGGY	2 cut(s)	118, 274
Bse1I	ACTGG	1 cut(s)	637
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	2 cut(s)	708, 739
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	4 cut(s)	118, 191, 251, 302
BseMI	GCAATG	1 cut(s)	520
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	2 cut(s)	267, 728
Bsh1236I	CGCG	1 cut(s)	431
BshNI	GGYRCC	2 cut(s)	277, 633
BshTI	ACCGGT	1 cut(s)	118
BsiSI	CCGG	3 cut(s)	119, 275, 642
BslI	CCNNNNNNNGG	4 cut(s)	118, 191, 251, 302
BsmAI	GTCTC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	130, 328
Bsp19I	CCATGG	1 cut(s)	708
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	279, 635
BspPI	GGATC	1 cut(s)	125
BspT107I	GGYRCC	2 cut(s)	277, 633
BsrDI	GCAATG	1 cut(s)	520
BsrFI	RCCGGY	2 cut(s)	118, 274
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	637
BssAI	RCCGGY	2 cut(s)	118, 274
BssECI	CCNNGG	2 cut(s)	708, 739
BssMI	GATC	2 cut(s)	130, 328
BssT1I	CCWWGG	2 cut(s)	708, 739
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	7 cut(s)	9, 95, 232, 282, 422, 506, 683
BstAUI	TGTACA	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	748
BstDSI	CCRYGG	1 cut(s)	708
BstF5I	GGATG	1 cut(s)	555
BstFNI	CGCG	1 cut(s)	431
BstKTI	GATC	2 cut(s)	133, 331
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	2 cut(s)	130, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	641, 729
BstUI	CGCG	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	737
BtgI	CCRYGG	1 cut(s)	708
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	5, 688
Cfr10I	RCCGGY	2 cut(s)	118, 274
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	6 cut(s)	266, 409, 427, 454, 634, 727
CspAI	ACCGGT	1 cut(s)	118
CviAII	CATG	2 cut(s)	50, 709
CviJI	RGCY	8 cut(s)	59, 109, 306, 313, 486, 498, 582, 691
CviKI_1	RGCY	8 cut(s)	59, 109, 306, 313, 486, 498, 582, 691
CviQI	GTAC	6 cut(s)	266, 409, 427, 454, 634, 727
DpnI	GATC	2 cut(s)	132, 330
DpnII	GATC	2 cut(s)	130, 328
Eco130I	CCWWGG	2 cut(s)	708, 739
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	2 cut(s)	708, 739
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	2 cut(s)	708, 739
FaeI	CATG	2 cut(s)	53, 712
FatI	CATG	2 cut(s)	49, 708
FauNDI	CATATG	1 cut(s)	202
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	60
HapII	CCGG	3 cut(s)	119, 275, 642
Hin1II	CATG	2 cut(s)	53, 712
HinfI	GANTC	2 cut(s)	239, 287
HpaII	CCGG	3 cut(s)	119, 275, 642
HphI	GGTGA	5 cut(s)	79, 150, 174, 234, 264
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	4 cut(s)	332, 377, 569, 590
Hpy8I	GTNNAC	1 cut(s)	456
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	242, 476
HpyCH4III	ACNGT	7 cut(s)	9, 95, 232, 282, 422, 506, 683
HpyCH4IV	ACGT	3 cut(s)	21, 600, 747
HpyCH4V	TGCA	3 cut(s)	47, 206, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpySE526I	ACGT	3 cut(s)	21, 600, 747
Hsp92II	CATG	2 cut(s)	53, 712
KpnI	GGTACC	1 cut(s)	637
Kzo9I	GATC	2 cut(s)	130, 328
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	3 cut(s)	21, 600, 747
MaeIII	GTNAC	5 cut(s)	85, 121, 240, 554, 677
MalI	GATC	2 cut(s)	132, 330
MboI	GATC	2 cut(s)	130, 328
MboII	GAAGA	3 cut(s)	67, 140, 616
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	3 cut(s)	28, 224, 436
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	3 cut(s)	245, 641, 706
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	3 cut(s)	119, 275, 642
MspR9I	CCNGG	2 cut(s)	643, 731
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	483
NciI	CCSGG	1 cut(s)	643
NcoI	CCATGG	1 cut(s)	708
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	2 cut(s)	130, 328
NlaIII	CATG	2 cut(s)	53, 712
NlaIV	GGNNCC	2 cut(s)	279, 635
NmuCI	GTSAC	4 cut(s)	85, 121, 240, 554
NspI	RCATGY	1 cut(s)	53
PciI	ACATGT	1 cut(s)	49
PctI	GAATGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	287
PflMI	CCANNNNNTGG	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	641
PinAI	ACCGGT	1 cut(s)	118
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	748
PscI	ACATGT	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	2 cut(s)	279, 635
PspPI	GGNCC	1 cut(s)	194
PsrI	GAACNNNNNNTAC	3 cut(s)	249, 281, 728
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	6 cut(s)	267, 410, 428, 455, 635, 728
RsaNI	GTAC	6 cut(s)	266, 409, 427, 454, 634, 727
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	227
Sau3AI	GATC	2 cut(s)	130, 328
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	643, 731
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	9 cut(s)	24, 61, 265, 315, 500, 566, 584, 603, 750
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	3 cut(s)	28, 224, 436
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	641, 729
StyI	CCWWGG	2 cut(s)	708, 739
TaaI	ACNGT	7 cut(s)	9, 95, 232, 282, 422, 506, 683
TaiI	ACGT	3 cut(s)	24, 603, 750
TasI	AATT	3 cut(s)	28, 224, 436
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	2 cut(s)	12, 688
TseFI	GTSAC	4 cut(s)	85, 121, 240, 554
Tsp45I	GTSAC	4 cut(s)	85, 121, 240, 554
TspDTI	ATGAA	3 cut(s)	378, 408, 678
TspRI	CASTG	2 cut(s)	12, 688
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	53
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.