Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Reverse (-)

14187849 .. 14188736

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G134900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCTCCTTTTGCAAAATCACTCTCATTTTTCTTCCTTCTAGTGCTCATTTTCTCCTCCTTCGAAAATATTCAAGCTAGAGAGAGCGTGTTCTTCAGCAAAGTCACCCACTACAACAACAACAAGAATGTTAACGAGCCAACAATCAGTACCTCTATCGCAGAAGTGCCAACACCAGCACCGTCACCAGCAGCAGAGGCACCAGAACTAGCAGACGTGCAGGCACCAGCAGCAGAGGCACCAGAACTAGCAGATGTGCCGGCACCAGCACCAAGTTACTTGGAGAAAGAGCACCGCCACAATGGCGCCTTGTATGGCCTCGGCTCAGGCAAATCCCCTTCCACGGAGGAGACACCAACCACCATTGATGGTGAAGATGAAATTTTGGCCGAAGAACTAAGCGGTGAAAGCTTTGATCGCACAGGTAATTATGAAAGCACCAACTTGTACAACAACAATGGCTACAAGACCAACTATGTCAACAACAACAACTACGTTAATCGTAATGGCTACAAGACCAACTATGTCAACAACAACAACTACATTAATGGCAATGGCTACACAAAAACTAACAATTACAAGGGCAGCAATGGCTACACAAAAACGAACAATTACAAGGGCGGCAATGGCTACACAAAAACGAACAATTACAAGGGCGGCAATGGCTGGGAAAACCGTGAGGTTAATGTACAGCAAGGGATGAGTGACACAAGGTTTTTGGAAAACGGTAGGTACTTTCATGATGTGAAGAATGAGATTAACCAAAATTTCAATGAAAATTACGAAGGAGGGAGAGGAAGCACTAGAAACTATGTTGAGAACTCCAATGAGTTCAACACCATGGAAGAGTATGATAAGTACCAGGAGAGCCGAGGATATGTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

33.07

Weight (kDa)

4.92

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	199, 223, 238, 262, 305
AciI	CCGC	4 cut(s)	295, 402, 621, 657
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	2 cut(s)	381, 766
AcuI	CTGAAG	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	5 cut(s)	151, 449, 690, 734, 860
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	74, 772, 835
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	861
AluBI	AGCT	2 cut(s)	77, 411
AluI	AGCT	2 cut(s)	77, 411
Alw21I	GWGCWC	2 cut(s)	48, 294
Alw26I	GTCTC	1 cut(s)	344
AoxI	GGCC	2 cut(s)	316, 387
ApeKI	GCWGC	3 cut(s)	191, 230, 585
ApoI	RAATTY	2 cut(s)	381, 766
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	97, 177, 383, 416
AsuII	TTCGAA	1 cut(s)	63
BanI	GGYRCC	5 cut(s)	199, 223, 238, 262, 305
Bbv12I	GWGCWC	2 cut(s)	48, 294
BbvI	GCAGC	3 cut(s)	203, 242, 597
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	863
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	5 cut(s)	41, 78, 209, 248, 804
BfoI	RGCGCY	1 cut(s)	309
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	5 cut(s)	192, 231, 586, 622, 658
BlsI	GCNGC	5 cut(s)	193, 232, 587, 623, 659
Bme1390I	CCNGG	1 cut(s)	863
BmgBI	CACGTC	1 cut(s)	217
BmiI	GGNNCC	6 cut(s)	6, 201, 225, 240, 264, 307
BmrFI	CCNGG	1 cut(s)	863
Bpu10I	CCTNAGC	1 cut(s)	325
Bpu14I	TTCGAA	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	4 cut(s)	319, 342, 840, 871
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	259
Bse3DI	GCAATG	4 cut(s)	559, 595, 631, 667
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	4 cut(s)	319, 342, 840, 871
BseGI	GGATG	1 cut(s)	705
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	4 cut(s)	559, 595, 631, 667
BseMII	CTCAG	1 cut(s)	339
BseRI	GAGGAG	2 cut(s)	46, 362
BseXI	GCAGC	3 cut(s)	203, 242, 597
BseYI	CCCAGC	1 cut(s)	666
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	318, 389
BshNI	GGYRCC	5 cut(s)	199, 223, 238, 262, 305
BsiHKAI	GWGCWC	2 cut(s)	48, 294
BsiSI	CCGG	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	318, 389
Bsp119I	TTCGAA	1 cut(s)	63
Bsp1286I	GDGCHC	2 cut(s)	48, 294
Bsp1407I	TGTACA	2 cut(s)	447, 688
Bsp143I	GATC	1 cut(s)	415
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	4 cut(s)	295, 402, 621, 657
BspANI	GGCC	2 cut(s)	318, 389
BspCNI	CTCAG	1 cut(s)	338
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	6 cut(s)	6, 201, 225, 240, 264, 307
BspT104I	TTCGAA	1 cut(s)	63
BspT107I	GGYRCC	5 cut(s)	199, 223, 238, 262, 305
BsrDI	GCAATG	4 cut(s)	559, 595, 631, 667
BsrFI	RCCGGY	1 cut(s)	259
BsrGI	TGTACA	2 cut(s)	447, 688
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	319, 342, 840, 871
BssMI	GATC	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	840
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	3 cut(s)	183, 677, 728
Bst6I	CTCTTC	1 cut(s)	840
BstACI	GRCGYC	1 cut(s)	306
BstAUI	TGTACA	2 cut(s)	447, 688
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	222, 261
BstDEI	CTNAG	2 cut(s)	325, 398
BstDSI	CCRYGG	2 cut(s)	342, 840
BstF5I	GGATG	1 cut(s)	705
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	1 cut(s)	415
BstNI	CCWGG	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	861
BstV1I	GCAGC	3 cut(s)	203, 242, 597
BsuRI	GGCC	2 cut(s)	318, 389
BtgI	CCRYGG	2 cut(s)	342, 840
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	705
Cac8I	GCNNGC	2 cut(s)	222, 261
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	259
Csp6I	GTAC	5 cut(s)	150, 448, 689, 733, 859
CviAII	CATG	2 cut(s)	740, 841
CviQI	GTAC	5 cut(s)	150, 448, 689, 733, 859
DdeI	CTNAG	2 cut(s)	325, 398
DinI	GGCGCC	1 cut(s)	307
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
Eco130I	CCWWGG	1 cut(s)	840
Eco57I	CTGAAG	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	861
EcoT14I	CCWWGG	1 cut(s)	840
EgeI	GGCGCC	1 cut(s)	307
EheI	GGCGCC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	2 cut(s)	743, 844
FaiI	YATR	9 cut(s)	315, 432, 477, 525, 741, 813, 842, 852, 879
FatI	CATG	2 cut(s)	739, 840
Fnu4HI	GCNGC	5 cut(s)	192, 231, 586, 622, 658
FokI	GGATG	1 cut(s)	712
Fsp4HI	GCNGC	5 cut(s)	192, 231, 586, 622, 658
FspBI	CTAG	5 cut(s)	41, 78, 209, 248, 804
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	5 cut(s)	192, 231, 586, 622, 658
GsaI	CCCAGC	1 cut(s)	670
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	318, 389
HapII	CCGG	1 cut(s)	260
HhaI	GCGC	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	743, 844
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	3 cut(s)	133, 481, 529
HindII	GTYRAC	3 cut(s)	133, 481, 529
HindIII	AAGCTT	1 cut(s)	409
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	4 cut(s)	97, 177, 383, 416
Hpy166II	GTNNAC	3 cut(s)	133, 481, 529
Hpy188III	TCNNGA	1 cut(s)	740
Hpy8I	GTNNAC	3 cut(s)	133, 481, 529
HpyAV	CCTTC	4 cut(s)	47, 70, 348, 779
HpyCH4III	ACNGT	3 cut(s)	183, 677, 728
HpyCH4IV	ACGT	2 cut(s)	216, 495
HpyCH4V	TGCA	2 cut(s)	14, 220
HpyF3I	CTNAG	2 cut(s)	325, 398
HpySE526I	ACGT	2 cut(s)	216, 495
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	743, 844
HspAI	GCGC	1 cut(s)	306
KasI	GGCGCC	1 cut(s)	305
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	203, 242, 597
MaeI	CTAG	5 cut(s)	41, 78, 209, 248, 804
MaeII	ACGT	2 cut(s)	216, 495
MaeIII	GTNAC	4 cut(s)	103, 183, 275, 704
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	6 cut(s)	25, 85, 386, 404, 760, 857
MhlI	GDGCHC	2 cut(s)	48, 294
MluCI	AATT	7 cut(s)	381, 427, 574, 610, 646, 766, 778
Mly113I	GGCGCC	1 cut(s)	306
MroNI	GCCGGC	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	6 cut(s)	132, 498, 546, 684, 759, 886
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	863
MvaI	CCWGG	1 cut(s)	863
NaeI	GCCGGC	1 cut(s)	261
NarI	GGCGCC	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	840
NdeII	GATC	1 cut(s)	415
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	743, 844
NlaIV	GGNNCC	6 cut(s)	6, 201, 225, 240, 264, 307
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	3 cut(s)	103, 183, 704
NspV	TTCGAA	1 cut(s)	63
PagI	TCATGA	1 cut(s)	739
PdiI	GCCGGC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	69
PkrI	GCNGC	5 cut(s)	193, 232, 587, 623, 659
PluTI	GGCGCC	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	861
PspFI	CCCAGC	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	6 cut(s)	6, 201, 225, 240, 264, 307
RsaI	GTAC	5 cut(s)	151, 449, 690, 734, 860
RsaNI	GTAC	5 cut(s)	150, 448, 689, 733, 859
SaqAI	TTAA	6 cut(s)	132, 498, 546, 684, 759, 886
SatI	GCNGC	5 cut(s)	192, 231, 586, 622, 658
Sau3AI	GATC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	863
SduI	GDGCHC	2 cut(s)	48, 294
SetI	ASST	9 cut(s)	79, 155, 219, 413, 427, 498, 684, 716, 734
SfoI	GGCGCC	1 cut(s)	307
SfuI	TTCGAA	1 cut(s)	63
Sse9I	AATT	7 cut(s)	381, 427, 574, 610, 646, 766, 778
SsiI	CCGC	4 cut(s)	295, 402, 621, 657
SspDI	GGCGCC	1 cut(s)	305
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	5 cut(s)	41, 78, 209, 248, 804
StyD4I	CCNGG	1 cut(s)	861
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	3 cut(s)	183, 677, 728
TaiI	ACGT	2 cut(s)	219, 498
TaqI	TCGA	1 cut(s)	63
TasI	AATT	7 cut(s)	381, 427, 574, 610, 646, 766, 778
TatI	WGTACW	2 cut(s)	447, 688
TauI	GCSGC	2 cut(s)	624, 660
Tru1I	TTAA	6 cut(s)	132, 498, 546, 684, 759, 886
Tru9I	TTAA	6 cut(s)	132, 498, 546, 684, 759, 886
TseFI	GTSAC	3 cut(s)	103, 183, 704
TseI	GCWGC	3 cut(s)	191, 230, 585
Tsp45I	GTSAC	3 cut(s)	103, 183, 704
TspDTI	ATGAA	4 cut(s)	393, 447, 728, 789
TspGWI	ACGGA	1 cut(s)	359
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	381, 766
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	5 cut(s)	41, 78, 209, 248, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.