Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Forward (+)

1564491 .. 1567508

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTTATGGAAATCGAGCTTCTTCTAAAACTCCTGCGATCTCAGGTTTGCGTGAAAAGCATCAACAGGATCTTGAAAAACTGACATTGACCTCACAACCATTCAAAACCTTGAGATTATTTGTTGTTGCTGTTTTTCTCTATGTTAGAAGATGGTCCTCTTACCTTCTTGCAAATGTTGGCTGGCTTATACTTTTTTGTAGCATTTTTGTTGCATTTGCAGCTCTTCTTGTGACCCTAGATGGGCCTCACGTCAAGCATGTTGAAGAACTGTCTGAGTACACCAGGTTTGGACTATGGTGGATATTCTTAGGTGTTGCATCATCAATTGGTCTTGGATCTGGTTTGCATACATTTGTTCTTTATTTGGGTCCCCATATTGCTTTATTTACCATAAAAGTAATGCAGTGCGGGCGAGTCGATTTAAAGAGTGCTATATATGATACAATTCAGTTGAAGAGAAGCCCTTCATGGCTTGATAAACCATGCCACGAGTTTGGCTCCCCAGTTTTTTCTTCTGGAGTTCCTCTTAGCAGTATACTACCACAGGTTCAGATAGAAGCCATCCTATGGGGTCTAGGAACAGCGTTGGGAGAACTTCCTCCTTACTTTATCTCCAGAGCAGCAAGTCTTTCCGGTGGCAAAATGAAAGAATTGGAGACATGTTCTGGTGACGATAACGGATTCATTGCTAAACGCGTAAATCAGATCAAAAGCTGGTTATTGTCGCATTCACAATATCTCAACTTCTTCACAATCCTGATTCTTGCTTCGGTTCCTAACCCATTATTCGACCTTGCTGGAATCATGTGTGGACAATTCGAGAAACCGTTTTGGGAGTTTTTCCTTGCAACCTTGATTGGAAAGGCAATCATCAAGACACATATACAGACGGTTTTCATCATATGCGTCTGTAATAATCAGCTTCTTGACTGGGTAGAGAATGAGCTGATATATATTCTGAGCTTTGTGCCCGGTTTTGCTTCTGCATTGCCTGAGCTCACAGCGAAACTCCGCTTAATGAAAGAGAAGTACTTGATTGCTTCGCCTCCAGTATCTTCTGATATCAATGTCAAGAAATGGGATCTTTCTTTTGCATCCGTGTGGAACGGAGTCGTGTGGCTGATGCTTTTGAATTTCTTCGGCCAGATTGTGACTTCAACTGCACAGAGATACCTAAAGAAGCAACAAGAAGAAGAACTAGATGCCTTGACCAACAAGTCGTCGCTGACCTCAAAGAAATCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006887 GO:0006996 GO:0007029 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031984 GO:0032940 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0071840 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

416

Amino Acids

46.62

Weight (kDa)

9.0

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1219
AccB7I	CCANNNNNTGG	1 cut(s)	570
AccI	GTMKAC	1 cut(s)	538
AccII	CGCG	1 cut(s)	699
AciI	CCGC	2 cut(s)	411, 1015
AclWI	GGATC	3 cut(s)	78, 346, 1092
AcoI	YGGCCR	1 cut(s)	1144
AcsI	RAATTY	1 cut(s)	1135
AfaI	GTAC	2 cut(s)	281, 1034
AfiI	CCNNNNNNNGG	2 cut(s)	243, 570
AflIII	ACRYGT	2 cut(s)	662, 697
AgsI	TTSAA	6 cut(s)	77, 106, 266, 457, 1135, 1161
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	7 cut(s)	20, 224, 717, 925, 949, 966, 1000
AluI	AGCT	7 cut(s)	20, 224, 717, 925, 949, 966, 1000
Alw21I	GWGCWC	1 cut(s)	1002
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	3 cut(s)	78, 346, 1092
AoxI	GGCC	2 cut(s)	245, 1144
ApeKI	GCWGC	2 cut(s)	221, 623
ApoI	RAATTY	1 cut(s)	1135
Asp700I	GAANNNNTTC	2 cut(s)	466, 1139
AspS9I	GGNCC	3 cut(s)	156, 245, 371
AsuC2I	CCSGG	1 cut(s)	975
AsuHPI	GGTGA	1 cut(s)	683
AvaII	GGWCC	2 cut(s)	156, 371
BaeGI	GKGCMC	1 cut(s)	975
BanII	GRGCYC	1 cut(s)	1002
BauI	CACGAG	1 cut(s)	491
Bbv12I	GWGCWC	1 cut(s)	1002
BbvI	GCAGC	2 cut(s)	233, 635
BccI	CCATC	3 cut(s)	147, 236, 572
BciT130I	CCWGG	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	975
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	3 cut(s)	239, 578, 1202
BisI	GCNGC	2 cut(s)	222, 624
BlsI	GCNGC	2 cut(s)	223, 625
BmcAI	AGTACT	1 cut(s)	1034
Bme1390I	CCNGG	2 cut(s)	286, 975
Bme18I	GGWCC	2 cut(s)	156, 371
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	156, 245, 371
BmiI	GGNNCC	4 cut(s)	372, 373, 502, 777
BmrFI	CCNGG	2 cut(s)	286, 975
BmrI	ACTGGG	2 cut(s)	500, 943
BmsI	GCATC	5 cut(s)	70, 329, 1106, 1116, 1195
BmuI	ACTGGG	2 cut(s)	500, 943
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	3 cut(s)	540, 601, 1035
Bpu10I	CCTNAGC	1 cut(s)	996
BpuEI	CTTGAG	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	975
BsaWI	WCCGGW	1 cut(s)	635
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 570
Bse1I	ACTGG	3 cut(s)	506, 938, 1052
Bse3DI	GCAATG	2 cut(s)	687, 989
BseBI	CCWGG	1 cut(s)	286
BseGI	GGATG	2 cut(s)	564, 1097
BseLI	CCNNNNNNNGG	2 cut(s)	243, 570
BseMI	GCAATG	2 cut(s)	687, 989
BseMII	CTCAG	4 cut(s)	57, 267, 953, 987
BseNI	ACTGG	3 cut(s)	506, 938, 1052
BseSI	GKGCMC	1 cut(s)	975
BseXI	GCAGC	2 cut(s)	233, 635
BsgI	GTGCAG	1 cut(s)	1149
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	2 cut(s)	247, 1146
BsiHKAI	GWGCWC	1 cut(s)	1002
BsiSI	CCGG	2 cut(s)	636, 975
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	243, 570
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	247, 1146
Bsp1286I	GDGCHC	2 cut(s)	975, 1002
Bsp143I	GATC	5 cut(s)	39, 70, 338, 708, 1084
BspACI	CCGC	2 cut(s)	411, 1015
BspANI	GGCC	2 cut(s)	247, 1146
BspCNI	CTCAG	4 cut(s)	56, 268, 954, 988
BspFNI	CGCG	1 cut(s)	699
BspLI	GGNNCC	4 cut(s)	372, 373, 502, 777
BspPI	GGATC	3 cut(s)	78, 346, 1092
BspQI	GCTCTTC	1 cut(s)	231
BsrDI	GCAATG	2 cut(s)	687, 989
BsrI	ACTGG	3 cut(s)	506, 938, 1052
BssMI	GATC	5 cut(s)	39, 70, 338, 708, 1084
BssNAI	GTATAC	1 cut(s)	539
BssSI	CACGAG	1 cut(s)	491
Bst1107I	GTATAC	1 cut(s)	539
Bst2BI	CACGAG	1 cut(s)	491
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	3 cut(s)	273, 831, 895
Bst6I	CTCTTC	2 cut(s)	231, 452
BstC8I	GCNNGC	2 cut(s)	185, 413
BstDEI	CTNAG	7 cut(s)	43, 276, 310, 530, 962, 996, 1245
BstF5I	GGATG	2 cut(s)	564, 1097
BstFNI	CGCG	1 cut(s)	699
BstKTI	GATC	5 cut(s)	42, 73, 341, 711, 1087
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	5 cut(s)	39, 70, 338, 708, 1084
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 221, 412
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	2 cut(s)	263, 666
BstSCI	CCNGG	2 cut(s)	284, 973
BstSLI	GKGCMC	1 cut(s)	975
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	2 cut(s)	233, 635
BstX2I	RGATCY	3 cut(s)	70, 338, 1084
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	3 cut(s)	70, 338, 1084
BstZ17I	GTATAC	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	247, 1146
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	564, 1097
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	185, 413
Cfr13I	GGNCC	3 cut(s)	156, 245, 371
CseI	GACGC	1 cut(s)	898
CsiI	ACCWGGT	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	280, 1033
CviAII	CATG	5 cut(s)	260, 471, 486, 663, 808
CviQI	GTAC	2 cut(s)	280, 1033
DdeI	CTNAG	7 cut(s)	43, 276, 310, 530, 962, 996, 1245
DpnI	GATC	5 cut(s)	41, 72, 340, 710, 1086
DpnII	GATC	5 cut(s)	39, 70, 338, 708, 1084
DraI	TTTAAA	1 cut(s)	426
DrdI	GACNNNNNNGTC	1 cut(s)	1219
DseDI	GACNNNNNNGTC	1 cut(s)	1219
EaeI	YGGCCR	1 cut(s)	1144
Eam1104I	CTCTTC	2 cut(s)	231, 452
EarI	CTCTTC	2 cut(s)	231, 452
Ecl136II	GAGCTC	1 cut(s)	1000
Eco24I	GRGCYC	1 cut(s)	1002
Eco32I	GATATC	1 cut(s)	1066
Eco47I	GGWCC	2 cut(s)	156, 371
Eco53kI	GAGCTC	1 cut(s)	1000
EcoICRI	GAGCTC	1 cut(s)	1000
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	1066
EcoT38I	GRGCYC	1 cut(s)	1002
FaeI	CATG	5 cut(s)	263, 474, 489, 666, 811
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	5 cut(s)	259, 470, 485, 662, 807
FauI	CCCGC	1 cut(s)	404
FauNDI	CATATG	1 cut(s)	905
FblI	GTMKAC	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	222, 624
FokI	GGATG	2 cut(s)	551, 1084
FriOI	GRGCYC	1 cut(s)	1002
Fsp4HI	GCNGC	2 cut(s)	222, 624
FspBI	CTAG	3 cut(s)	239, 578, 1202
GluI	GCNGC	2 cut(s)	222, 624
GsuI	CTGGAG	3 cut(s)	540, 601, 1035
HaeIII	GGCC	2 cut(s)	247, 1146
HapII	CCGG	2 cut(s)	636, 975
HgaI	GACGC	1 cut(s)	898
Hin1II	CATG	5 cut(s)	263, 474, 489, 666, 811
HinfI	GANTC	5 cut(s)	417, 684, 763, 804, 1113
HpaII	CCGG	2 cut(s)	636, 975
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	3 cut(s)	282, 539, 815
Hpy188I	TCNGA	5 cut(s)	277, 555, 708, 963, 1063
Hpy188III	TCNNGA	8 cut(s)	74, 519, 618, 760, 823, 877, 929, 1075
Hpy8I	GTNNAC	3 cut(s)	282, 539, 815
Hpy99I	CGWCG	1 cut(s)	1228
HpyAV	CCTTC	2 cut(s)	176, 477
HpyCH4III	ACNGT	3 cut(s)	273, 831, 895
HpyCH4IV	ACGT	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 221, 412
HpyF3I	CTNAG	7 cut(s)	43, 276, 310, 530, 962, 996, 1245
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	5 cut(s)	263, 474, 489, 666, 811
KflI	GGGWCCC	1 cut(s)	371
Kzo9I	GATC	5 cut(s)	39, 70, 338, 708, 1084
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	2 cut(s)	233, 635
LweI	GCATC	5 cut(s)	70, 329, 1106, 1116, 1195
MabI	ACCWGGT	1 cut(s)	284
MaeI	CTAG	3 cut(s)	239, 578, 1202
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	3 cut(s)	232, 671, 1153
MalI	GATC	5 cut(s)	41, 72, 340, 710, 1086
MboI	GATC	5 cut(s)	39, 70, 338, 708, 1084
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	3 cut(s)	70, 338, 1084
MhlI	GDGCHC	2 cut(s)	975, 1002
MluCI	AATT	5 cut(s)	327, 447, 653, 818, 1135
MluI	ACGCGT	1 cut(s)	697
MlyI	GAGTC	2 cut(s)	426, 1122
MnlI	CCTC	7 cut(s)	103, 169, 258, 537, 612, 1059, 1243
MroXI	GAANNNNTTC	2 cut(s)	466, 1139
MseI	TTAA	2 cut(s)	425, 1019
MslI	CAYNNNNRTG	1 cut(s)	1102
MspI	CCGG	2 cut(s)	636, 975
MspR9I	CCNGG	2 cut(s)	286, 975
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	3 cut(s)	58, 221, 412
NciI	CCSGG	1 cut(s)	975
NdeI	CATATG	1 cut(s)	905
NdeII	GATC	5 cut(s)	39, 70, 338, 708, 1084
NlaIII	CATG	5 cut(s)	263, 474, 489, 666, 811
NlaIV	GGNNCC	4 cut(s)	372, 373, 502, 777
NmuCI	GTSAC	3 cut(s)	232, 671, 1153
NspI	RCATGY	2 cut(s)	263, 666
PciI	ACATGT	1 cut(s)	662
PciSI	GCTCTTC	1 cut(s)	231
PctI	GAATGC	1 cut(s)	730
PdmI	GAANNNNTTC	2 cut(s)	466, 1139
PfeI	GAWTC	3 cut(s)	684, 763, 804
PflMI	CCANNNNNTGG	1 cut(s)	570
PkrI	GCNGC	2 cut(s)	223, 625
PleI	GAGTC	2 cut(s)	425, 1121
PpsI	GAGTC	2 cut(s)	425, 1121
PpuMI	RGGWCCY	1 cut(s)	371
PscI	ACATGT	1 cut(s)	662
Psp124BI	GAGCTC	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	4 cut(s)	372, 373, 502, 777
PspPI	GGNCC	3 cut(s)	156, 245, 371
PspPPI	RGGWCCY	1 cut(s)	371
PsuI	RGATCY	3 cut(s)	70, 338, 1084
RsaI	GTAC	2 cut(s)	281, 1034
RsaNI	GTAC	2 cut(s)	280, 1033
RseI	CAYNNNNRTG	1 cut(s)	1102
SacI	GAGCTC	1 cut(s)	1002
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	425, 1019
SatI	GCNGC	2 cut(s)	222, 624
Sau3AI	GATC	5 cut(s)	39, 70, 338, 708, 1084
Sau96I	GGNCC	3 cut(s)	156, 245, 371
ScaI	AGTACT	1 cut(s)	1034
SchI	GAGTC	2 cut(s)	426, 1122
ScrFI	CCNGG	2 cut(s)	286, 975
SduI	GDGCHC	2 cut(s)	975, 1002
SexAI	ACCWGGT	1 cut(s)	284
SfaNI	GCATC	5 cut(s)	70, 329, 1106, 1116, 1195
SinI	GGWCC	2 cut(s)	156, 371
SmiMI	CAYNNNNRTG	1 cut(s)	1102
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	5 cut(s)	327, 447, 653, 818, 1135
SsiI	CCGC	2 cut(s)	411, 1015
SspMI	CTAG	3 cut(s)	239, 578, 1202
SstI	GAGCTC	1 cut(s)	1002
StyD4I	CCNGG	2 cut(s)	284, 973
TaaI	ACNGT	3 cut(s)	273, 831, 895
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	4 cut(s)	16, 420, 792, 822
TasI	AATT	5 cut(s)	327, 447, 653, 818, 1135
TatI	WGTACW	2 cut(s)	279, 1032
TfiI	GAWTC	3 cut(s)	684, 763, 804
Tru1I	TTAA	2 cut(s)	425, 1019
Tru9I	TTAA	2 cut(s)	425, 1019
TscAI	CASTG	1 cut(s)	413
TseFI	GTSAC	3 cut(s)	232, 671, 1153
TseI	GCWGC	2 cut(s)	221, 623
Tsp45I	GTSAC	3 cut(s)	232, 671, 1153
TspDTI	ATGAA	5 cut(s)	459, 662, 676, 889, 1037
TspGWI	ACGGA	3 cut(s)	696, 1090, 1125
TspRI	CASTG	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	570
VpaK11BI	GGWCC	2 cut(s)	156, 371
XapI	RAATTY	1 cut(s)	1135
XceI	RCATGY	2 cut(s)	263, 666
XmiI	GTMKAC	1 cut(s)	538
XmnI	GAANNNNTTC	2 cut(s)	466, 1139
XspI	CTAG	3 cut(s)	239, 578, 1202
ZrmI	AGTACT	1 cut(s)	1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.