Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Forward (+)

28606682 .. 28609866

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G324700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGATCTCTCCGATGTCCCCTCGTCAAATTCCATGGACGCCTCCATCTCCGGACTGCGTGTGAAGCAGCACCGGGAACTAGAAAGCTTAACACTTACAGCGCAGCCATTAAAGACATTAAAGTATTTCATGTTGGGTTTTGGCCAATGCCTTCGACAATTTATGGCAAAAGGTGGTTGGCTTGTGCTTCTAATTATGTTAGCAGGAGGTATAGGAATGCTTACTATAACTATTGGTGGACATCAAGAAGAGCATATTCAGGAGCTTGTTCGTTATCTCCAATTCGGACTCTGGTGGCTGGCTCTTGGTGTAGCATCATCAATTGGTCTTGGATCTGGTTTGCACACATTTGTGCTGTATTTGGGGCCTCATATAGCTCTGTTTACTATGAAGGCAGTGCAGTGTGGCAGAGTTGACATAAAAAGTGCCCCATATGACACCATTCAATTGAAAAGTAGTCCTTCATGGCTGGACAGAGACTGCTCTGAATTTGGGGACCCCATATTTTTATCGCAGCACAGTTCAAGGGTTCCACTTAGCAGCATATTGCCTCAGGTTCAGTTAGAGGCTATCCTATGGGGAATCGGAACTGCACTGGGAGAGCTTCCTCCTTATTTCATATCAAGAGCTGCTCGTATATCTGGCGAAAAATTGGAAGTCATGAAAGACTTGGATTCTTCTTCAACTGAAGATAGTGGAATTGTAGCTAATCGTCTGAACCGGATCAAATTATGGCTGCTTTCTCATACACAATATCTGAACTTTTTAACTATATTAGTTCTTGCTTCGGTGCCCAACCCTCTATTTGACCTTGCCGGTATAATGTGTGGACAATTTGGCATTCCATTTTGGACGTTCTTCCTATCAACATTGATTGGAAAGGCATTTATCAAGACTCACATACAGACAGTTTTCATAATCTCAGTTTGCAACAATCAACTTCTGGACTTGGTAGAAAATAAATTGATTTGGGCGTTCAGCTTTGTCCCTGGATTTGGTTTGGTTGTGCCCGACCTCATCGCCAAATTACATACTGTGAAAGACAAGTATATGCATGCCTCTCCTGCAGTGCCCTCAAACAGCAAGGAGAAAAAGTGGGACTTATCATTTAGTTCGATTTGGAACACTGTTGTGTGGCTCATGCTCATGAACTTTTTCATCAAGATTGTCACAGCAACTGCGCAAAGCGTTCTCAAGGAAGAACATGAAAAGGAGTTGACTGCATTGTCGAACAAGCCGCATACATCAGAACAAAAAAATAATGGGTGTTGCAGCCAAGCATCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

430

Amino Acids

47.64

Weight (kDa)

7.18

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1225
Acc16I	TGCGCA	1 cut(s)	1182
AccB1I	GGYRCC	1 cut(s)	790
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	1 cut(s)	1238
AclWI	GGATC	3 cut(s)	12, 340, 731
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	28, 488
AcuI	CTGAAG	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	995
AgsI	TTSAA	4 cut(s)	446, 451, 525, 684
AjnI	CCWGG	1 cut(s)	988
AleI	CACNNNNGTG	2 cut(s)	350, 1130
AluBI	AGCT	7 cut(s)	87, 265, 377, 604, 629, 707, 981
AluI	AGCT	7 cut(s)	87, 265, 377, 604, 629, 707, 981
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	3 cut(s)	12, 340, 731
AlwNI	CAGNNNCTG	2 cut(s)	480, 1178
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	2 cut(s)	142, 365
ApeKI	GCWGC	7 cut(s)	67, 103, 514, 540, 629, 736, 1272
ApoI	RAATTY	2 cut(s)	28, 488
Asp700I	GAANNNNTTC	1 cut(s)	1154
AspLEI	GCGC	2 cut(s)	103, 1183
AspS9I	GGNCC	2 cut(s)	365, 496
AsuC2I	CCSGG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	496
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	4 cut(s)	430, 795, 1011, 1074
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	790
BbvI	GCAGC	7 cut(s)	79, 115, 526, 552, 616, 723, 1284
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	990
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	1065
BisI	GCNGC	8 cut(s)	68, 104, 515, 541, 630, 737, 1238, 1273
BlsI	GCNGC	8 cut(s)	69, 105, 516, 542, 631, 738, 1239, 1274
Bme1390I	CCNGG	2 cut(s)	74, 990
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	2 cut(s)	365, 496
BmiI	GGNNCC	5 cut(s)	366, 497, 498, 531, 792
BmrFI	CCNGG	2 cut(s)	74, 990
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	1 cut(s)	323
BmuI	ACTGGG	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	1178
BpuMI	CCSGG	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	33, 988
BsaWI	WCCGGW	2 cut(s)	50, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	1079, 1109
Bsc4I	CCNNNNNNNGG	1 cut(s)	995
Bse118I	RCCGGY	1 cut(s)	815
Bse1I	ACTGG	1 cut(s)	600
Bse21I	CCTNAGG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	2 cut(s)	33, 988
BseGI	GGATG	1 cut(s)	1280
BseLI	CCNNNNNNNGG	1 cut(s)	995
BseMII	CTCAG	2 cut(s)	566, 936
BseNI	ACTGG	1 cut(s)	600
BseSI	GKGCMC	4 cut(s)	430, 795, 1011, 1074
BseXI	GCAGC	7 cut(s)	79, 115, 526, 552, 616, 723, 1284
BsgI	GTGCAG	2 cut(s)	419, 576
BshFI	GGCC	2 cut(s)	144, 367
BshNI	GGYRCC	1 cut(s)	790
BsiSI	CCGG	4 cut(s)	51, 73, 721, 816
BslFI	GGGAC	4 cut(s)	2, 509, 971, 1112
BslI	CCNNNNNNNGG	1 cut(s)	995
BsmAI	GTCTC	1 cut(s)	471
BsmFI	GGGAC	4 cut(s)	2, 509, 971, 1112
BsmI	GAATGC	2 cut(s)	222, 840
BsnI	GGCC	2 cut(s)	144, 367
Bsp1286I	GDGCHC	4 cut(s)	430, 795, 1011, 1074
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	3 cut(s)	4, 332, 723
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	1238
BspANI	GGCC	2 cut(s)	144, 367
BspCNI	CTCAG	2 cut(s)	565, 935
BspEI	TCCGGA	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	660, 1146
BspLI	GGNNCC	5 cut(s)	366, 497, 498, 531, 792
BspMAI	CTGCAG	1 cut(s)	1069
BspPI	GGATC	3 cut(s)	12, 340, 731
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	790
BsrFI	RCCGGY	1 cut(s)	815
BsrI	ACTGG	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	815
BssECI	CCNNGG	2 cut(s)	33, 988
BssMI	GATC	3 cut(s)	4, 332, 723
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	4 cut(s)	521, 910, 1036, 1129
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	300, 1056
BstDEI	CTNAG	3 cut(s)	536, 552, 922
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	1280
BstHHI	GCGC	2 cut(s)	103, 1183
BstKTI	GATC	3 cut(s)	7, 335, 726
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	3 cut(s)	4, 332, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 1064
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	1 cut(s)	1058
BstSCI	CCNGG	2 cut(s)	72, 988
BstSFI	CTRYAG	1 cut(s)	1065
BstSLI	GKGCMC	4 cut(s)	430, 795, 1011, 1074
BstV1I	GCAGC	7 cut(s)	79, 115, 526, 552, 616, 723, 1284
BstX2I	RGATCY	2 cut(s)	4, 332
BstYI	RGATCY	2 cut(s)	4, 332
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	144, 367
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	1003
BtsCI	GGATG	1 cut(s)	1280
BtsI	GCAGTG	3 cut(s)	402, 407, 1074
BtsIMutI	CAGTG	5 cut(s)	402, 407, 593, 1074, 1125
Cac8I	GCNNGC	2 cut(s)	300, 1056
CaiI	CAGNNNCTG	2 cut(s)	480, 1178
CciI	TCATGA	2 cut(s)	660, 1146
CfoI	GCGC	2 cut(s)	103, 1183
Cfr10I	RCCGGY	1 cut(s)	815
Cfr13I	GGNCC	2 cut(s)	365, 496
CseI	GACGC	1 cut(s)	47
CviAII	CATG	8 cut(s)	34, 130, 465, 661, 1055, 1141, 1147, 1205
DdeI	CTNAG	3 cut(s)	536, 552, 922
DpnI	GATC	3 cut(s)	6, 334, 725
DpnII	GATC	3 cut(s)	4, 332, 723
DrdI	GACNNNNNNGTC	1 cut(s)	1225
DseDI	GACNNNNNNGTC	1 cut(s)	1225
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	708
Eco81I	CCTNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	2 cut(s)	365, 496
EcoRII	CCWGG	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	1056
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	8 cut(s)	37, 133, 468, 664, 1058, 1144, 1150, 1208
FalI	AAGNNNNNCTT	4 cut(s)	445, 477, 1085, 1117
FaqI	GGGAC	4 cut(s)	2, 509, 971, 1112
FatI	CATG	8 cut(s)	33, 129, 464, 660, 1054, 1140, 1146, 1204
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	8 cut(s)	68, 104, 515, 541, 630, 737, 1238, 1273
FokI	GGATG	1 cut(s)	1267
Fsp4HI	GCNGC	8 cut(s)	68, 104, 515, 541, 630, 737, 1238, 1273
FspBI	CTAG	1 cut(s)	80
FspI	TGCGCA	1 cut(s)	1182
GlaI	GCGC	2 cut(s)	102, 1182
GluI	GCNGC	8 cut(s)	68, 104, 515, 541, 630, 737, 1238, 1273
HaeIII	GGCC	2 cut(s)	144, 367
HapII	CCGG	4 cut(s)	51, 73, 721, 816
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	103, 1183
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	8 cut(s)	37, 133, 468, 664, 1058, 1144, 1150, 1208
Hin6I	GCGC	2 cut(s)	101, 1181
HinP1I	GCGC	2 cut(s)	101, 1181
HincII	GTYRAC	2 cut(s)	415, 1218
HindII	GTYRAC	2 cut(s)	415, 1218
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	4 cut(s)	288, 582, 674, 895
HpaII	CCGG	4 cut(s)	51, 73, 721, 816
Hpy166II	GTNNAC	5 cut(s)	239, 384, 415, 830, 1218
Hpy188I	TCNGA	8 cut(s)	13, 287, 487, 587, 717, 759, 1249, 1285
Hpy188III	TCNNGA	9 cut(s)	51, 245, 260, 624, 661, 892, 944, 1147, 1162
Hpy8I	GTNNAC	5 cut(s)	239, 384, 415, 830, 1218
HpyAV	CCTTC	3 cut(s)	161, 385, 471
HpyCH4III	ACNGT	4 cut(s)	521, 910, 1036, 1129
HpyCH4IV	ACGT	1 cut(s)	854
HpyCH4V	TGCA	8 cut(s)	343, 400, 593, 930, 1054, 1067, 1223, 1272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 1064
HpyF3I	CTNAG	3 cut(s)	536, 552, 922
HpySE526I	ACGT	1 cut(s)	854
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	8 cut(s)	37, 133, 468, 664, 1058, 1144, 1150, 1208
HspAI	GCGC	2 cut(s)	101, 1181
KflI	GGGWCCC	1 cut(s)	496
Kpn2I	TCCGGA	1 cut(s)	50
Kzo9I	GATC	3 cut(s)	4, 332, 723
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	7 cut(s)	79, 115, 526, 552, 616, 723, 1284
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	854
MaeIII	GTNAC	1 cut(s)	1168
MalI	GATC	3 cut(s)	6, 334, 725
MboI	GATC	3 cut(s)	4, 332, 723
MboII	GAAGA	6 cut(s)	260, 669, 672, 701, 850, 1211
MfeI	CAATTG	2 cut(s)	321, 446
MflI	RGATCY	2 cut(s)	4, 332
MhlI	GDGCHC	4 cut(s)	430, 795, 1011, 1074
MlsI	TGGCCA	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	282, 889
Mox20I	TGGCCA	1 cut(s)	144
Mph1103I	ATGCAT	1 cut(s)	1056
MroI	TCCGGA	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	1154
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	4 cut(s)	89, 110, 119, 767
MslI	CAYNNNNRTG	3 cut(s)	350, 1130, 1145
Msp20I	TGGCCA	1 cut(s)	144
MspI	CCGG	4 cut(s)	51, 73, 721, 816
MspR9I	CCNGG	2 cut(s)	74, 990
MunI	CAATTG	2 cut(s)	321, 446
Mva1269I	GAATGC	2 cut(s)	222, 840
MvaI	CCWGG	1 cut(s)	990
MwoI	GCNNNNNNNGC	2 cut(s)	64, 1064
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	33
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	3 cut(s)	4, 332, 723
NlaIII	CATG	8 cut(s)	37, 133, 468, 664, 1058, 1144, 1150, 1208
NlaIV	GGNNCC	5 cut(s)	366, 497, 498, 531, 792
NmuCI	GTSAC	1 cut(s)	1168
NsbI	TGCGCA	1 cut(s)	1182
NsiI	ATGCAT	1 cut(s)	1056
NspI	RCATGY	1 cut(s)	1058
OliI	CACNNNNGTG	2 cut(s)	350, 1130
PaeI	GCATGC	1 cut(s)	1058
PagI	TCATGA	2 cut(s)	660, 1146
PciSI	GCTCTTC	1 cut(s)	243
PctI	GAATGC	2 cut(s)	222, 840
PdmI	GAANNNNTTC	1 cut(s)	1154
PfeI	GAWTC	2 cut(s)	582, 674
PkrI	GCNGC	8 cut(s)	69, 105, 516, 542, 631, 738, 1239, 1274
PleI	GAGTC	2 cut(s)	282, 889
PpsI	GAGTC	2 cut(s)	282, 889
PpuMI	RGGWCCY	1 cut(s)	496
Psp5II	RGGWCCY	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	988
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	5 cut(s)	366, 497, 498, 531, 792
PspPI	GGNCC	2 cut(s)	365, 496
PspPPI	RGGWCCY	1 cut(s)	496
PstI	CTGCAG	1 cut(s)	1069
PstNI	CAGNNNCTG	2 cut(s)	480, 1178
PsuI	RGATCY	2 cut(s)	4, 332
RseI	CAYNNNNRTG	3 cut(s)	350, 1130, 1145
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	89, 110, 119, 767
SatI	GCNGC	8 cut(s)	68, 104, 515, 541, 630, 737, 1238, 1273
Sau3AI	GATC	3 cut(s)	4, 332, 723
Sau96I	GGNCC	2 cut(s)	365, 496
SchI	GAGTC	2 cut(s)	282, 889
ScrFI	CCNGG	2 cut(s)	74, 990
SduI	GDGCHC	4 cut(s)	430, 795, 1011, 1074
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	1065
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	3 cut(s)	350, 1130, 1145
SmlI	CTYRAG	1 cut(s)	1193
SmoI	CTYRAG	1 cut(s)	1193
SphI	GCATGC	1 cut(s)	1058
SsiI	CCGC	1 cut(s)	1238
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	72, 988
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	4 cut(s)	521, 910, 1036, 1129
TaiI	ACGT	1 cut(s)	857
TaqI	TCGA	3 cut(s)	154, 1115, 1229
TauI	GCSGC	1 cut(s)	1240
TfiI	GAWTC	2 cut(s)	582, 674
Tru1I	TTAA	4 cut(s)	89, 110, 119, 767
Tru9I	TTAA	4 cut(s)	89, 110, 119, 767
TscAI	CASTG	5 cut(s)	402, 407, 600, 1074, 1132
TseFI	GTSAC	1 cut(s)	1168
TseI	GCWGC	7 cut(s)	67, 103, 514, 540, 629, 736, 1272
Tsp45I	GTSAC	1 cut(s)	1168
TspDTI	ATGAA	9 cut(s)	118, 404, 453, 607, 677, 904, 1147, 1163, 1221
TspRI	CASTG	5 cut(s)	402, 407, 600, 1074, 1132
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	2 cut(s)	28, 488
XceI	RCATGY	1 cut(s)	1058
XmnI	GAANNNNTTC	1 cut(s)	1154
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.