Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028514.1

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Forward (+)

32 .. 2057

Gene Structure 2026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028514.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgaaagccgtgcagtgtggcagagttgacttaaaaattgccccatatgacaccgttcaattgaaaacgggtccttcatggatggatagaaactgctctgaatatggtcccccactattttcatcccagcaaggttcaaggctcccacttagcagcatactgcctcaggttcagttagaggctattctgtggggaattggaactgcactgggagagcttcctccatttttcatatcaagagctgctcgtatagcagggagtgaattggaagtaatgaaagaattggattcttcttcaactgaagatggtggagttgtagctaatcacgtgaaccggatcaaactatggcttctttcacattcacagtatctgaactttttaacgatattagttcttgcttcggtacccaaccctctatttgaccttgctggtataatgtgtggacaatttggcattccattttggacattctttatctcaacagtgattggaaaggcatttatcaagactcacatacagaccattttcctcatctcagtttgcaacaatcaacttcttgacttggtagaaaataaattgattcggttgctcagcattttccctggatttggtttgattgcgcccaaactgattgccaaactacatattttgaaagagaagtatatggatggctctccttcagttatctcaaacagcgaggtgaaaaagtggaacttttctattggtgcaatttggaatactgttgtgtggctcatgctcatcaactttttcatcaagattgtatcggcaactgcacaaaccgttctcaaggaagaacatgaaaaggagttgactgcattgacaaacaatgtacaggcatcagatctcggcaaggttgtgtcaacaactgcacaaaacgttctcaaggaagagcagaaaaaggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.16

Weight (kDa)

8.27

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	403
AclI	AACGTT	1 cut(s)	897
AclWI	GGATC	1 cut(s)	344
AcuI	CTGAAG	2 cut(s)	321, 663
AcvI	CACGTG	1 cut(s)	328
AfaI	GTAC	2 cut(s)	405, 852
AfiI	CCNNNNNNNGG	1 cut(s)	608
AgsI	TTSAA	5 cut(s)	59, 64, 138, 297, 652
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	3 cut(s)	217, 242, 320
AluI	AGCT	3 cut(s)	217, 242, 320
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	153, 242
Asp718I	GGTACC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	2 cut(s)	71, 107
AsuHPI	GGTGA	1 cut(s)	712
AvaII	GGWCC	2 cut(s)	71, 107
AxyI	CCTNAGG	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	165, 229
BccI	CCATC	3 cut(s)	76, 299, 662
BciT130I	CCWGG	1 cut(s)	603
BglII	AGATCT	1 cut(s)	862
BisI	GCNGC	2 cut(s)	154, 243
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	2 cut(s)	155, 244
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	2 cut(s)	71, 107
BmgT120I	GGNCC	2 cut(s)	71, 107
BmiI	GGNNCC	4 cut(s)	72, 109, 143, 405
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	866
BmuI	ACTGGG	1 cut(s)	218
Bpu1102I	GCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	2 cut(s)	791, 887
BsaAI	YACGTR	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	601
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	213
Bse21I	CCTNAGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	601
BseGI	GGATG	3 cut(s)	87, 122, 673
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMII	CTCAG	3 cut(s)	179, 549, 604
BseNI	ACTGG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	165, 229
BseYI	CCCAGC	1 cut(s)	126
BsgI	GTGCAG	4 cut(s)	32, 189, 777, 873
BshNI	GGYRCC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	453
Bsp1407I	TGTACA	1 cut(s)	850
Bsp143I	GATC	2 cut(s)	336, 862
Bsp1720I	GCTNAGC	1 cut(s)	590
BspCNI	CTCAG	3 cut(s)	178, 548, 603
BspLI	GGNNCC	4 cut(s)	72, 109, 143, 405
BspPI	GGATC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	903
BspT107I	GGYRCC	1 cut(s)	403
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	601
BssMI	GATC	2 cut(s)	336, 862
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	5 cut(s)	55, 366, 484, 742, 802
Bst6I	CTCTTC	1 cut(s)	903
BstAUI	TGTACA	1 cut(s)	850
BstBAI	YACGTR	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	149, 165, 535, 590
BstF5I	GGATG	3 cut(s)	87, 122, 673
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	2 cut(s)	339, 865
BstMBI	GATC	2 cut(s)	336, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	601
BstV1I	GCAGC	2 cut(s)	165, 229
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
Bsu36I	CCTNAGG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	87, 122, 673
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	3 cut(s)	20, 206, 489
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	1 cut(s)	622
Cfr13I	GGNCC	2 cut(s)	71, 107
Csp6I	GTAC	2 cut(s)	404, 851
CviAII	CATG	3 cut(s)	78, 754, 818
CviJI	RGCY	9 cut(s)	8, 142, 182, 217, 242, 320, 349, 672, 751
CviKI_1	RGCY	9 cut(s)	8, 142, 182, 217, 242, 320, 349, 672, 751
CviQI	GTAC	2 cut(s)	404, 851
DdeI	CTNAG	4 cut(s)	149, 165, 535, 590
DpnI	GATC	2 cut(s)	338, 864
DpnII	GATC	2 cut(s)	336, 862
Eam1104I	CTCTTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	903
Eco47I	GGWCC	2 cut(s)	71, 107
Eco57I	CTGAAG	2 cut(s)	321, 663
Eco72I	CACGTG	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	601
FaeI	CATG	3 cut(s)	81, 757, 821
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	3 cut(s)	77, 753, 817
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	154, 243
FokI	GGATG	3 cut(s)	94, 109, 680
Fsp4HI	GCNGC	2 cut(s)	154, 243
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	2 cut(s)	154, 243
GsaI	CCCAGC	1 cut(s)	130
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	3 cut(s)	81, 757, 821
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HincII	GTYRAC	3 cut(s)	28, 831, 882
HindII	GTYRAC	3 cut(s)	28, 831, 882
HinfI	GANTC	3 cut(s)	287, 508, 580
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	712
Hpy166II	GTNNAC	5 cut(s)	28, 331, 443, 831, 882
Hpy188I	TCNGA	3 cut(s)	100, 372, 862
Hpy188III	TCNNGA	4 cut(s)	237, 505, 557, 775
Hpy8I	GTNNAC	5 cut(s)	28, 331, 443, 831, 882
HpyAV	CCTTC	2 cut(s)	84, 687
HpyCH4III	ACNGT	5 cut(s)	55, 366, 484, 742, 802
HpyCH4IV	ACGT	2 cut(s)	327, 897
HpyCH4V	TGCA	7 cut(s)	13, 206, 543, 728, 794, 836, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	4 cut(s)	149, 165, 535, 590
HpySE526I	ACGT	2 cut(s)	327, 897
Hsp92II	CATG	3 cut(s)	81, 757, 821
HspAI	GCGC	1 cut(s)	620
KpnI	GGTACC	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	336, 862
LguI	GCTCTTC	1 cut(s)	903
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	9 cut(s)	140, 152, 194, 240, 347, 414, 588, 615, 839
Lsp1109I	GCAGC	2 cut(s)	165, 229
LweI	GCATC	1 cut(s)	866
MaeII	ACGT	2 cut(s)	327, 897
MalI	GATC	2 cut(s)	338, 864
MboI	GATC	2 cut(s)	336, 862
MboII	GAAGA	5 cut(s)	282, 285, 314, 824, 920
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	1 cut(s)	862
MluCI	AATT	8 cut(s)	36, 59, 195, 263, 281, 446, 575, 729
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	6 cut(s)	172, 174, 231, 423, 539, 691
MseI	TTAA	2 cut(s)	32, 380
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	603
MunI	CAATTG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	2 cut(s)	336, 862
NlaIII	CATG	3 cut(s)	81, 757, 821
NlaIV	GGNNCC	4 cut(s)	72, 109, 143, 405
NmeAIII	GCCGAG	1 cut(s)	846
PciSI	GCTCTTC	1 cut(s)	903
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	287, 580
PkrI	GCNGC	2 cut(s)	155, 244
PleI	GAGTC	1 cut(s)	502
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	502
Ppu21I	YACGTR	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	71
Psp1406I	AACGTT	1 cut(s)	897
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	601
PspCI	CACGTG	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	4 cut(s)	72, 109, 143, 405
PspPI	GGNCC	2 cut(s)	71, 107
PspPPI	RGGWCCY	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	862
RsaI	GTAC	2 cut(s)	405, 852
RsaNI	GTAC	2 cut(s)	404, 851
SapI	GCTCTTC	1 cut(s)	903
SaqAI	TTAA	2 cut(s)	32, 380
SatI	GCNGC	2 cut(s)	154, 243
Sau3AI	GATC	2 cut(s)	336, 862
Sau96I	GGNCC	2 cut(s)	71, 107
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	603
SfaNI	GCATC	1 cut(s)	866
SinI	GGWCC	2 cut(s)	71, 107
SmlI	CTYRAG	2 cut(s)	806, 902
SmoI	CTYRAG	2 cut(s)	806, 902
Sse9I	AATT	8 cut(s)	36, 59, 195, 263, 281, 446, 575, 729
StyD4I	CCNGG	1 cut(s)	601
TaaI	ACNGT	5 cut(s)	55, 366, 484, 742, 802
TaiI	ACGT	2 cut(s)	330, 900
TasI	AATT	8 cut(s)	36, 59, 195, 263, 281, 446, 575, 729
TatI	WGTACW	1 cut(s)	850
TfiI	GAWTC	2 cut(s)	287, 580
Tru1I	TTAA	2 cut(s)	32, 380
Tru9I	TTAA	2 cut(s)	32, 380
TscAI	CASTG	3 cut(s)	20, 213, 489
TseI	GCWGC	2 cut(s)	153, 242
TspDTI	ATGAA	7 cut(s)	17, 66, 111, 220, 290, 760, 834
TspRI	CASTG	3 cut(s)	20, 213, 489
VpaK11BI	GGWCC	2 cut(s)	71, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.