Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001861.1

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Reverse (-)

197488 .. 198923

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001861.1_g000059.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgaaagaattggattcttcttcaactaaagatggtggagttgtagctaatcacgtgaaccggatcaaactatggcttctttcacattcacagtatctgaactttttaacgatattagttcttgcttcggtacccaaccctctatttgaccttgctggtataatgtgtggacaatttggcattccattttggacattctttatctcaacagtgattggaaaggcatttatcaagactcacatacagaccattttcctcatctcagtttgcaacaatcaacttcttgacttggtagaaaataaattgattcggttgctcagcattttccctggatttggtttgattgcgcccaaactgattgccaaactacatattttgaaagagaagtatatggatggctctccttcagttatctcaaacagcgaggtgaaaaagtggaacttctctattggtgcaatttggaatactgttgtgtggctcatgctcatcaactttttcatcaagattgtgtcggcaactgcacaaaccgttctcaaggaagaacatgaaaaggagttgactgcattgacgaacaatgtacaggcatcagatctcggcaaggttgtgtcaacaactgcacaaaacgttctcaaggaagagcagaaaaaggagttgactgcaaagcaactggctgacgaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.37

Weight (kDa)

8.79

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	130
AclI	AACGTT	1 cut(s)	624
AclWI	GGATC	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	390
AcvI	CACGTG	1 cut(s)	55
AfaI	GTAC	2 cut(s)	132, 579
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	24, 379
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AlwI	GGATC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	97
Asp718I	GGTACC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	130
BbrPI	CACGTG	1 cut(s)	55
BccI	CCATC	2 cut(s)	26, 389
BciT130I	CCWGG	1 cut(s)	330
BglII	AGATCT	1 cut(s)	589
BlpI	GCTNAGC	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	593
Bpu1102I	GCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	518, 614
BsaAI	YACGTR	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	276, 331
BseNI	ACTGG	1 cut(s)	672
BsgI	GTGCAG	2 cut(s)	504, 600
BshNI	GGYRCC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	2 cut(s)	63, 589
Bsp1720I	GCTNAGC	1 cut(s)	317
BspCNI	CTCAG	2 cut(s)	275, 330
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	130
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	672
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	63, 589
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	4 cut(s)	93, 211, 469, 529
Bst6I	CTCTTC	1 cut(s)	630
BstAUI	TGTACA	1 cut(s)	577
BstBAI	YACGTR	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	262, 317
BstF5I	GGATG	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	2 cut(s)	66, 592
BstMBI	GATC	2 cut(s)	63, 589
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	97
CfoI	GCGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	131, 578
CviAII	CATG	2 cut(s)	481, 545
CviJI	RGCY	5 cut(s)	47, 76, 399, 478, 671
CviKI_1	RGCY	5 cut(s)	47, 76, 399, 478, 671
CviQI	GTAC	2 cut(s)	131, 578
DdeI	CTNAG	2 cut(s)	262, 317
DpnI	GATC	2 cut(s)	65, 591
DpnII	GATC	2 cut(s)	63, 589
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco57I	CTGAAG	1 cut(s)	390
Eco72I	CACGTG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	328
FaeI	CATG	2 cut(s)	484, 548
FaiI	YATR	8 cut(s)	73, 161, 242, 372, 390, 392, 482, 546
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	2 cut(s)	480, 544
FokI	GGATG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	348
HapII	CCGG	1 cut(s)	61
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	2 cut(s)	484, 548
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	3 cut(s)	558, 609, 654
HindII	GTYRAC	3 cut(s)	558, 609, 654
HinfI	GANTC	3 cut(s)	14, 235, 307
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	5 cut(s)	58, 170, 558, 609, 654
Hpy188I	TCNGA	2 cut(s)	99, 589
Hpy188III	TCNNGA	3 cut(s)	232, 284, 502
Hpy8I	GTNNAC	5 cut(s)	58, 170, 558, 609, 654
HpyAV	CCTTC	1 cut(s)	414
HpyCH4III	ACNGT	4 cut(s)	93, 211, 469, 529
HpyCH4IV	ACGT	2 cut(s)	54, 624
HpyCH4V	TGCA	6 cut(s)	270, 455, 521, 563, 617, 659
HpyF3I	CTNAG	2 cut(s)	262, 317
HpySE526I	ACGT	2 cut(s)	54, 624
Hsp92II	CATG	2 cut(s)	484, 548
HspAI	GCGC	1 cut(s)	347
KpnI	GGTACC	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	63, 589
LguI	GCTCTTC	1 cut(s)	630
LpnPI	CCDG	6 cut(s)	74, 141, 315, 342, 566, 653
LweI	GCATC	1 cut(s)	593
MaeII	ACGT	2 cut(s)	54, 624
MalI	GATC	2 cut(s)	65, 591
MboI	GATC	2 cut(s)	63, 589
MboII	GAAGA	4 cut(s)	9, 12, 551, 647
MflI	RGATCY	1 cut(s)	589
MluCI	AATT	4 cut(s)	8, 173, 302, 456
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	150, 266, 418
MseI	TTAA	1 cut(s)	107
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	330
NdeII	GATC	2 cut(s)	63, 589
NlaIII	CATG	2 cut(s)	484, 548
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	630
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	14, 307
PleI	GAGTC	1 cut(s)	229
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	55
Psp1406I	AACGTT	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	328
PspCI	CACGTG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	589
RsaI	GTAC	2 cut(s)	132, 579
RsaNI	GTAC	2 cut(s)	131, 578
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	63, 589
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	6 cut(s)	49, 57, 153, 429, 603, 627
SfaNI	GCATC	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	533, 629
SmoI	CTYRAG	2 cut(s)	533, 629
Sse9I	AATT	4 cut(s)	8, 173, 302, 456
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	4 cut(s)	93, 211, 469, 529
TaiI	ACGT	2 cut(s)	57, 627
TasI	AATT	4 cut(s)	8, 173, 302, 456
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	2 cut(s)	14, 307
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	216
TspDTI	ATGAA	3 cut(s)	17, 487, 561
TspRI	CASTG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.