Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Reverse (-)

3437502 .. 3441389

Gene Structure 3888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGATCTCCCTGATTCGCCTTCATCAAATCCGTTGGATTCGCCTCTCTCCGGAATGCGTGAGAGGCATCTCCGGGAGCTTGAGAATTTAACACTTACGGCGAGGCCGGTGAAGACGTTAAGGTATTTCACGGTGGCAATTGGTCGATATGTTCGGCAATTTATGGCAAGAGGTGGTTCGTTTGTGTTGTTTACTGTGCTAGTTTTAGGTTTAGGAATTGCTACTATGACAATTGGTGGACCTCATGAAAAGCACATGCAGGAGCTTATCCGTTATCTCCAATTCGGACTCTGGTGGCTGGCTCTTGGTGTAGCATCTTCAATTGGTCTTGGGTCTGGTTTGCATACATTTGTACTGTATTTGGGTCCTCATATAGCTCTGTTTACCATGAAAGCCGTGCAGTGCGGTAGAGTTGACTTAAAAAGTGCCCCATACGACACCATTCAATTGAAAAGCAGTCCTTCATGGATGAATAGAAACTGCTCTGAATATGGCCCCCCACTATTTTCAAACCAGCAAGATTCAAGGCTCCCACTCAGCAGCATTTTGTCTCAGGTTCAGTTAGAAGCTGTTCTGTGGGGAATTGGAACTGCACTGGGAGAGCTTCCTCCGTTTTTCATATCAAGAGCTGCTCGTATAGCAGGGAGCGAATTGGAAGTAATGAAAGAATTGGATTCTTCTTCTACTGAAGATGGTGGAGTTGTAGCTAATCACGTGAACCGGATCAAATTATGGCTTCTTTCACATTCACAGTATCTGAACTTCGTAACAATATTAGTTCTCGCTTCAGTACCCAACCCTCTATTTGACCTTGCTGGTATAATGTGTGGACAATTTGGCATCCCGTTTTGGACGTTCTTTGTCTCGACAATGGTTGGAAAGGCATTTATTAAGACTCACATACAGACAATTTTTCTCATCTCAGTTTGCAACAATCAACTTCTTGACTTGGTAGAAAATAAATTGATTCGGTTGCTCAGCATTTTCCCTGGATTTGGTCTGATTGCGCCCAAACTCATTGCCAAACTACATATTTTGAAAGAGAAGTATATGGATAGCTCTCCTCAAGCCATCTCAAACAGCGAGGTGAAAAAGTGGAACTTCTCCATTGGTGCAATTTGGAATACTGTTGTGTGGCTCATGATCATCAACTTTTTCATCAAGATTGTGTCAGCAACTGCACAAACCATTCTCAAGGAAGAACATGAAAAGGAGATGTCTGCATTGACGAGCAATATACATGCATCAGATCTCGGCAATATTGTGTCAGCAACTGCACAAAATGTTCTCAAGAAAGAACATAAAAAAGAGTTGACTGCATTGAGGAATAATTTACAGGCATCAGAACTCAGCAAAGCAGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

456

Amino Acids

50.44

Weight (kDa)

9.12

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	2 cut(s)	12, 731
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	2 cut(s)	708, 771
AcvI	CACGTG	1 cut(s)	715
AfaI	GTAC	2 cut(s)	354, 792
AfiI	CCNNNNNNNGG	2 cut(s)	50, 995
AgsI	TTSAA	6 cut(s)	321, 446, 451, 510, 525, 1039
AjnI	CCWGG	1 cut(s)	988
AluBI	AGCT	8 cut(s)	79, 265, 377, 569, 604, 629, 707, 1059
AluI	AGCT	8 cut(s)	79, 265, 377, 569, 604, 629, 707, 1059
Alw26I	GTCTC	2 cut(s)	555, 868
AlwI	GGATC	2 cut(s)	12, 731
AlwNI	CAGNNNCTG	3 cut(s)	757, 1178, 1274
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	2 cut(s)	104, 493
ApeKI	GCWGC	3 cut(s)	540, 629, 1358
ApoI	RAATTY	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	1009
AspS9I	GGNCC	3 cut(s)	239, 365, 494
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	121, 1099
AvaII	GGWCC	2 cut(s)	239, 365
BaeGI	GKGCMC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	746, 778
BbrPI	CACGTG	1 cut(s)	715
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	552, 616
BccI	CCATC	2 cut(s)	686, 1079
BceAI	ACGGC	2 cut(s)	114, 380
BciT130I	CCWGG	1 cut(s)	990
BclI	TGATCA	1 cut(s)	1143
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	555, 868
BfaI	CTAG	1 cut(s)	200
BglII	AGATCT	1 cut(s)	1249
BisI	GCNGC	3 cut(s)	541, 630, 1359
BlpI	GCTNAGC	1 cut(s)	977
BlsI	GCNGC	3 cut(s)	542, 631, 1360
Bme1390I	CCNGG	2 cut(s)	74, 990
Bme18I	GGWCC	2 cut(s)	239, 365
BmgT120I	GGNCC	3 cut(s)	239, 365, 494
BmiI	GGNNCC	3 cut(s)	366, 496, 530
BmrFI	CCNGG	2 cut(s)	74, 990
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	5 cut(s)	76, 323, 849, 1253, 1349
BmuI	ACTGGG	1 cut(s)	605
BpiI	GAAGAC	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	977
BpuEI	CTTGAG	4 cut(s)	101, 1050, 1178, 1274
BpuMI	CCSGG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	715
BsaJI	CCNNGG	1 cut(s)	988
BsaWI	WCCGGW	2 cut(s)	50, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 995
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	1 cut(s)	1017
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	1 cut(s)	988
BseGI	GGATG	2 cut(s)	474, 840
BseLI	CCNNNNNNNGG	2 cut(s)	50, 995
BseMI	GCAATG	1 cut(s)	1017
BseMII	CTCAG	5 cut(s)	550, 566, 936, 991, 1363
BseNI	ACTGG	1 cut(s)	600
BseRI	GAGGAG	1 cut(s)	1053
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	552, 616
BsgI	GTGCAG	4 cut(s)	419, 576, 1164, 1260
BshFI	GGCC	2 cut(s)	106, 495
BsiSI	CCGG	4 cut(s)	51, 73, 107, 721
BslI	CCNNNNNNNGG	2 cut(s)	50, 995
BsmAI	GTCTC	2 cut(s)	555, 868
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	106, 495
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	4 cut(s)	4, 723, 1143, 1249
Bsp1720I	GCTNAGC	1 cut(s)	977
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	2 cut(s)	106, 495
BspCNI	CTCAG	5 cut(s)	549, 565, 935, 990, 1362
BspEI	TCCGGA	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	244, 1140
BspLI	GGNNCC	3 cut(s)	366, 496, 530
BspPI	GGATC	2 cut(s)	12, 731
BsrDI	GCAATG	1 cut(s)	1017
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	988
BssMI	GATC	4 cut(s)	4, 723, 1143, 1249
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	5 cut(s)	133, 196, 357, 753, 1129
BstBAI	YACGTR	1 cut(s)	715
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	5 cut(s)	536, 552, 922, 977, 1349
BstF5I	GGATG	2 cut(s)	474, 840
BstHHI	GCGC	1 cut(s)	1009
BstKTI	GATC	4 cut(s)	7, 726, 1146, 1252
BstMAI	GTCTC	2 cut(s)	555, 868
BstMBI	GATC	4 cut(s)	4, 723, 1143, 1249
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 638
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	2 cut(s)	259, 1244
BstSCI	CCNGG	2 cut(s)	72, 988
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	2 cut(s)	552, 616
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	4, 1249
BstYI	RGATCY	2 cut(s)	4, 1249
BsuRI	GGCC	2 cut(s)	106, 495
BtsCI	GGATG	2 cut(s)	474, 840
BtsI	GCAGTG	1 cut(s)	407
BtsIMutI	CAGTG	2 cut(s)	407, 593
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	3 cut(s)	757, 1178, 1274
CciI	TCATGA	2 cut(s)	244, 1140
CfoI	GCGC	1 cut(s)	1009
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	239, 365, 494
Csp6I	GTAC	2 cut(s)	353, 791
CviAII	CATG	7 cut(s)	245, 256, 388, 465, 1141, 1205, 1241
CviQI	GTAC	2 cut(s)	353, 791
DdeI	CTNAG	5 cut(s)	536, 552, 922, 977, 1349
DpnI	GATC	4 cut(s)	6, 725, 1145, 1251
DpnII	GATC	4 cut(s)	4, 723, 1143, 1249
Eco47I	GGWCC	2 cut(s)	239, 365
Eco57I	CTGAAG	2 cut(s)	708, 771
Eco72I	CACGTG	1 cut(s)	715
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	988
EcoT22I	ATGCAT	1 cut(s)	1246
FaeI	CATG	7 cut(s)	248, 259, 391, 468, 1144, 1208, 1244
FalI	AAGNNNNNCTT	4 cut(s)	445, 477, 1085, 1117
FatI	CATG	7 cut(s)	244, 255, 387, 464, 1140, 1204, 1240
FbaI	TGATCA	1 cut(s)	1143
Fnu4HI	GCNGC	3 cut(s)	541, 630, 1359
FokI	GGATG	2 cut(s)	481, 827
Fsp4HI	GCNGC	3 cut(s)	541, 630, 1359
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	1008
GluI	GCNGC	3 cut(s)	541, 630, 1359
HaeIII	GGCC	2 cut(s)	106, 495
HapII	CCGG	4 cut(s)	51, 73, 107, 721
HhaI	GCGC	1 cut(s)	1009
Hin1II	CATG	7 cut(s)	248, 259, 391, 468, 1144, 1208, 1244
Hin6I	GCGC	1 cut(s)	1007
HinP1I	GCGC	1 cut(s)	1007
HincII	GTYRAC	2 cut(s)	415, 1314
HindII	GTYRAC	2 cut(s)	415, 1314
HinfI	GANTC	7 cut(s)	14, 38, 288, 521, 674, 895, 967
HpaII	CCGG	4 cut(s)	51, 73, 107, 721
HphI	GGTGA	2 cut(s)	121, 1099
Hpy166II	GTNNAC	7 cut(s)	192, 239, 384, 415, 718, 830, 1314
Hpy188I	TCNGA	6 cut(s)	287, 487, 759, 1002, 1249, 1345
Hpy188III	TCNNGA	8 cut(s)	51, 245, 624, 865, 944, 1141, 1162, 1291
Hpy8I	GTNNAC	7 cut(s)	192, 239, 384, 415, 718, 830, 1314
HpyAV	CCTTC	2 cut(s)	30, 471
HpyCH4III	ACNGT	5 cut(s)	133, 196, 357, 753, 1129
HpyCH4IV	ACGT	3 cut(s)	116, 714, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 638
HpyF3I	CTNAG	5 cut(s)	536, 552, 922, 977, 1349
HpySE526I	ACGT	3 cut(s)	116, 714, 854
Hsp92II	CATG	7 cut(s)	248, 259, 391, 468, 1144, 1208, 1244
HspAI	GCGC	1 cut(s)	1007
Kpn2I	TCCGGA	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	1143
Kzo9I	GATC	4 cut(s)	4, 723, 1143, 1249
LmnI	GCTCC	4 cut(s)	76, 262, 534, 645
Lsp1109I	GCAGC	2 cut(s)	552, 616
LweI	GCATC	5 cut(s)	76, 323, 849, 1253, 1349
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	3 cut(s)	116, 714, 854
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	4 cut(s)	6, 725, 1145, 1251
MboI	GATC	4 cut(s)	4, 723, 1143, 1249
MboII	GAAGA	6 cut(s)	124, 309, 669, 672, 701, 1211
MfeI	CAATTG	4 cut(s)	138, 231, 321, 446
MflI	RGATCY	2 cut(s)	4, 1249
MhlI	GDGCHC	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	282, 889
MmeI	TCCRAC	2 cut(s)	15, 856
Mph1103I	ATGCAT	1 cut(s)	1246
MroI	TCCGGA	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	570
MseI	TTAA	4 cut(s)	89, 119, 419, 891
MspI	CCGG	4 cut(s)	51, 73, 107, 721
MspR9I	CCNGG	2 cut(s)	74, 990
MunI	CAATTG	4 cut(s)	138, 231, 321, 446
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	990
MwoI	GCNNNNNNNGC	2 cut(s)	64, 638
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	4 cut(s)	4, 723, 1143, 1249
NlaIII	CATG	7 cut(s)	248, 259, 391, 468, 1144, 1208, 1244
NlaIV	GGNNCC	3 cut(s)	366, 496, 530
NmeAIII	GCCGAG	1 cut(s)	1233
NsiI	ATGCAT	1 cut(s)	1246
NspI	RCATGY	2 cut(s)	259, 1244
PagI	TCATGA	2 cut(s)	244, 1140
PctI	GAATGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	5 cut(s)	14, 38, 521, 674, 967
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	3 cut(s)	542, 631, 1360
PleI	GAGTC	2 cut(s)	282, 889
PmaCI	CACGTG	1 cut(s)	715
PmlI	CACGTG	1 cut(s)	715
PpsI	GAGTC	2 cut(s)	282, 889
Ppu21I	YACGTR	1 cut(s)	715
PpuMI	RGGWCCY	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	988
PspCI	CACGTG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	3 cut(s)	366, 496, 530
PspPI	GGNCC	3 cut(s)	239, 365, 494
PspPPI	RGGWCCY	1 cut(s)	365
PstNI	CAGNNNCTG	3 cut(s)	757, 1178, 1274
PsuI	RGATCY	2 cut(s)	4, 1249
RsaI	GTAC	2 cut(s)	354, 792
RsaNI	GTAC	2 cut(s)	353, 791
SaqAI	TTAA	4 cut(s)	89, 119, 419, 891
SatI	GCNGC	3 cut(s)	541, 630, 1359
Sau3AI	GATC	4 cut(s)	4, 723, 1143, 1249
Sau96I	GGNCC	3 cut(s)	239, 365, 494
SchI	GAGTC	2 cut(s)	282, 889
ScrFI	CCNGG	2 cut(s)	74, 990
SduI	GDGCHC	1 cut(s)	430
SfaNI	GCATC	5 cut(s)	76, 323, 849, 1253, 1349
SinI	GGWCC	2 cut(s)	239, 365
SmlI	CTYRAG	4 cut(s)	80, 1065, 1193, 1289
SmoI	CTYRAG	4 cut(s)	80, 1065, 1193, 1289
SsiI	CCGC	1 cut(s)	405
SspI	AATATT	2 cut(s)	774, 1261
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	72, 988
TaaI	ACNGT	5 cut(s)	133, 196, 357, 753, 1129
TaiI	ACGT	3 cut(s)	119, 717, 857
TaqI	TCGA	2 cut(s)	145, 866
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	5 cut(s)	14, 38, 521, 674, 967
Tru1I	TTAA	4 cut(s)	89, 119, 419, 891
Tru9I	TTAA	4 cut(s)	89, 119, 419, 891
TscAI	CASTG	2 cut(s)	407, 600
TseI	GCWGC	3 cut(s)	540, 629, 1358
TspDTI	ATGAA	9 cut(s)	12, 261, 404, 453, 485, 607, 677, 1147, 1221
TspGWI	ACGGA	3 cut(s)	21, 260, 600
TspRI	CASTG	2 cut(s)	407, 600
VpaK11BI	GGWCC	2 cut(s)	239, 365
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	2 cut(s)	259, 1244
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	1246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.