Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Forward (+)

45540114 .. 45543141

Gene Structure 3028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025395

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAAAGGAGGAGGACTGCGTGTGAGGCATCACCGGGAACTCGAAAATTTAACACTTACGACGAGGCCGGTAAAGACATTAAAGTATTTCACTGTGGCAATTGGTCGGTATTTTCGGCAATTTATGGCAACTGGTGGTTCGTTTGTGCCGTTTATTATGCTAGCAGGAGGTCTAGGAATTGCTACTATGACAATTGGCGGACCACATGAAAAGCACATGCAGGAGCTTTTCCGTTATCTGCAATTTGGACTCTGGTGGCTGGCTCTTGGTGTGGCATCATCAATTGGTCTGGGATCTGGTTTGCACACATTTGTACTGTATTTGGGCCCTCATATAGCTCTGTTTACCATGAAAGCCGTGCAGTGTGGCAGAGTTGACTTAAAAATTGCCCCATATGATACCGTTCAATTGAAAACGGGTCCTTCATGGATGGATAGAAACTGCTCTGAATATGGTCCCCCACTATTTTCATCCCAGCAAGGTTCAAGGCTCCCACTTAGCAGCATACTGCCTCAGGTTCAGTTAGAGGCTATTCTGTGGGGAATTGGAACTGCACTGGGAGAGCTTCCTCCATTTTTCATATCAAGAGCTGCTCGTATAGCAGGGAGTGAATTGGAAGTAATGAAAGAATTGGATTCTTCTTCAACTGAAGATGGTGGAGTTGTAGCTAATCACGTGAACCGGATCAAACTATGGCTTCTTTCACATTCACAGTATCTGAACTTTTTAACGATATTAGTTCTTGCTTCGGTACCCAACCCTCTATTTGACCTTGCTGGTATAATGTGTGGACAATTTGGCATTCCATTTTGGACATTCTTTATCTCAACAATCATTGGAAAGGCATTTATCAAGACTCACATACAGACCATTTTCCTTATCTCAGTTTGCAACAATCAACTTCTTGACTTGGTAGAAAATAAATTGATTCGGTTGCTTAGCATTTTCCCTGGATTTGGTATGATTGCGCCCAAACTGATTGCCAAACTACATATTTTGAAAGAGAAGTATATGGATGGCTCTCCAGTTATCTCAAACAGTGAGGTGAAAAAGTGGAACTTCTCTATTGGTGCAATTTGGAATACTGTTGTGTGGCTCATGCTCATCAACTTTTTCATCAAGATTGTGTCAGCAACTGCACAAACCATTCTCAAGGAAGAACATGAAAAGGAGTTGACTGCATTGACGAACAATTTACAGGCATCAGATCTCGGCAAGTTTGTGTCAACAACTGCACAAAACGTTCTCAAGGAAGAGCAGAAAAGGGAGTTGACTGCAAAGCAACTGGCTGACGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

434

Amino Acids

48.17

Weight (kDa)

9.2

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	751
AccB1I	GGYRCC	1 cut(s)	751
AciI	CCGC	1 cut(s)	198
AclI	AACGTT	1 cut(s)	1242
AclWI	GGATC	2 cut(s)	301, 692
AcsI	RAATTY	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	669
AcvI	CACGTG	1 cut(s)	676
AfaI	GTAC	2 cut(s)	315, 753
AfiI	CCNNNNNNNGG	1 cut(s)	956
AgsI	TTSAA	5 cut(s)	407, 412, 486, 645, 1000
AjnI	CCWGG	1 cut(s)	949
AluBI	AGCT	5 cut(s)	226, 338, 565, 590, 668
AluI	AGCT	5 cut(s)	226, 338, 565, 590, 668
AlwI	GGATC	2 cut(s)	301, 692
AlwNI	CAGNNNCTG	2 cut(s)	718, 1136
AoxI	GGCC	2 cut(s)	65, 325
ApaI	GGGCCC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	501, 590
ApoI	RAATTY	1 cut(s)	46
Asp718I	GGTACC	1 cut(s)	751
AspLEI	GCGC	1 cut(s)	970
AspS9I	GGNCC	5 cut(s)	200, 325, 326, 419, 455
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	23, 1057
AsuNHI	GCTAGC	1 cut(s)	160
AvaII	GGWCC	3 cut(s)	200, 419, 455
AxyI	CCTNAGG	1 cut(s)	513
BaeGI	GKGCMC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	329
BbrPI	CACGTG	1 cut(s)	676
BbvI	GCAGC	2 cut(s)	513, 577
BccI	CCATC	3 cut(s)	424, 647, 1010
BceAI	ACGGC	2 cut(s)	133, 341
BciT130I	CCWGG	1 cut(s)	951
BcnI	CCSGG	1 cut(s)	35
BfaI	CTAG	2 cut(s)	161, 173
BglII	AGATCT	1 cut(s)	1207
BisI	GCNGC	2 cut(s)	502, 591
BlpI	GCTNAGC	1 cut(s)	938
BlsI	GCNGC	2 cut(s)	503, 592
Bme1390I	CCNGG	2 cut(s)	35, 951
Bme18I	GGWCC	3 cut(s)	200, 419, 455
BmgT120I	GGNCC	5 cut(s)	200, 325, 326, 419, 455
BmiI	GGNNCC	5 cut(s)	327, 420, 457, 491, 753
BmrFI	CCNGG	2 cut(s)	35, 951
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	3 cut(s)	37, 284, 1211
BmtI	GCTAGC	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	1008
Bpu1102I	GCTNAGC	1 cut(s)	938
BpuEI	CTTGAG	2 cut(s)	1136, 1232
BpuMI	CCSGG	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	676
BsaJI	CCNNGG	1 cut(s)	949
BsaWI	WCCGGW	1 cut(s)	681
Bsc4I	CCNNNNNNNGG	1 cut(s)	956
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	4 cut(s)	136, 561, 1025, 1290
Bse21I	CCTNAGG	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	951
BseDI	CCNNGG	1 cut(s)	949
BseGI	GGATG	3 cut(s)	435, 470, 1021
BseLI	CCNNNNNNNGG	1 cut(s)	956
BseMII	CTCAG	2 cut(s)	527, 897
BseNI	ACTGG	4 cut(s)	136, 561, 1025, 1290
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	513, 577
BseYI	CCCAGC	1 cut(s)	474
BsgI	GTGCAG	4 cut(s)	380, 537, 1122, 1218
BshFI	GGCC	2 cut(s)	67, 327
BshNI	GGYRCC	1 cut(s)	751
BsiSI	CCGG	3 cut(s)	34, 68, 682
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	956
BsmFI	GGGAC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	801
BsnI	GGCC	2 cut(s)	67, 327
Bsp120I	GGGCCC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	293, 684, 1207
Bsp1720I	GCTNAGC	1 cut(s)	938
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	2 cut(s)	67, 327
BspCNI	CTCAG	2 cut(s)	526, 896
BspLI	GGNNCC	5 cut(s)	327, 420, 457, 491, 753
BspOI	GCTAGC	1 cut(s)	164
BspPI	GGATC	2 cut(s)	301, 692
BspQI	GCTCTTC	1 cut(s)	1248
BspT107I	GGYRCC	1 cut(s)	751
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	4 cut(s)	136, 561, 1025, 1290
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	949
BssMI	GATC	3 cut(s)	293, 684, 1207
Bst2UI	CCWGG	1 cut(s)	951
Bst4CI	ACNGT	6 cut(s)	94, 318, 403, 714, 1040, 1087
Bst6I	CTCTTC	1 cut(s)	1248
BstBAI	YACGTR	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	162, 261
BstDEI	CTNAG	4 cut(s)	497, 513, 883, 938
BstF5I	GGATG	3 cut(s)	435, 470, 1021
BstHHI	GCGC	1 cut(s)	970
BstKTI	GATC	3 cut(s)	296, 687, 1210
BstMBI	GATC	3 cut(s)	293, 684, 1207
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 599
BstNI	CCWGG	1 cut(s)	951
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	33, 949
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	513, 577
BstX2I	RGATCY	2 cut(s)	293, 1207
BstYI	RGATCY	2 cut(s)	293, 1207
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	67, 327
BtsCI	GGATG	3 cut(s)	435, 470, 1021
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	4 cut(s)	90, 368, 554, 1045
Cac8I	GCNNGC	2 cut(s)	162, 261
CaiI	CAGNNNCTG	2 cut(s)	718, 1136
CfoI	GCGC	1 cut(s)	970
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	5 cut(s)	200, 325, 326, 419, 455
Csp6I	GTAC	2 cut(s)	314, 752
CviAII	CATG	6 cut(s)	206, 217, 349, 426, 1099, 1163
CviQI	GTAC	2 cut(s)	314, 752
DdeI	CTNAG	4 cut(s)	497, 513, 883, 938
DpnI	GATC	3 cut(s)	295, 686, 1209
DpnII	GATC	3 cut(s)	293, 684, 1207
Eam1104I	CTCTTC	1 cut(s)	1248
EarI	CTCTTC	1 cut(s)	1248
EciI	GGCGGA	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	3 cut(s)	200, 419, 455
Eco57I	CTGAAG	1 cut(s)	669
Eco72I	CACGTG	1 cut(s)	676
Eco81I	CCTNAGG	1 cut(s)	513
EcoO109I	RGGNCCY	2 cut(s)	326, 419
EcoRII	CCWGG	1 cut(s)	949
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	6 cut(s)	209, 220, 352, 429, 1102, 1166
FalI	AAGNNNNNCTT	2 cut(s)	1043, 1075
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	6 cut(s)	205, 216, 348, 425, 1098, 1162
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	502, 591
FokI	GGATG	3 cut(s)	442, 457, 1028
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	502, 591
FspBI	CTAG	2 cut(s)	161, 173
GlaI	GCGC	1 cut(s)	969
GluI	GCNGC	2 cut(s)	502, 591
GsaI	CCCAGC	1 cut(s)	478
GsuI	CTGGAG	1 cut(s)	1008
HaeIII	GGCC	2 cut(s)	67, 327
HapII	CCGG	3 cut(s)	34, 68, 682
HhaI	GCGC	1 cut(s)	970
Hin1II	CATG	6 cut(s)	209, 220, 352, 429, 1102, 1166
Hin6I	GCGC	1 cut(s)	968
HinP1I	GCGC	1 cut(s)	968
HincII	GTYRAC	4 cut(s)	376, 1176, 1227, 1272
HindII	GTYRAC	4 cut(s)	376, 1176, 1227, 1272
HinfI	GANTC	4 cut(s)	249, 635, 856, 928
HpaII	CCGG	3 cut(s)	34, 68, 682
HphI	GGTGA	2 cut(s)	23, 1057
Hpy166II	GTNNAC	7 cut(s)	345, 376, 679, 791, 1176, 1227, 1272
Hpy188I	TCNGA	3 cut(s)	448, 720, 1207
Hpy188III	TCNNGA	4 cut(s)	585, 853, 905, 1120
Hpy8I	GTNNAC	7 cut(s)	345, 376, 679, 791, 1176, 1227, 1272
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	432
HpyCH4III	ACNGT	6 cut(s)	94, 318, 403, 714, 1040, 1087
HpyCH4IV	ACGT	2 cut(s)	675, 1242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 599
HpyF3I	CTNAG	4 cut(s)	497, 513, 883, 938
HpySE526I	ACGT	2 cut(s)	675, 1242
Hsp92II	CATG	6 cut(s)	209, 220, 352, 429, 1102, 1166
HspAI	GCGC	1 cut(s)	968
KpnI	GGTACC	1 cut(s)	755
Kzo9I	GATC	3 cut(s)	293, 684, 1207
LguI	GCTCTTC	1 cut(s)	1248
LmnI	GCTCC	2 cut(s)	223, 495
Lsp1109I	GCAGC	2 cut(s)	513, 577
LweI	GCATC	3 cut(s)	37, 284, 1211
MaeI	CTAG	2 cut(s)	161, 173
MaeII	ACGT	2 cut(s)	675, 1242
MalI	GATC	3 cut(s)	295, 686, 1209
MboI	GATC	3 cut(s)	293, 684, 1207
MboII	GAAGA	5 cut(s)	630, 633, 662, 1169, 1265
MfeI	CAATTG	4 cut(s)	99, 192, 282, 407
MflI	RGATCY	2 cut(s)	293, 1207
MhlI	GDGCHC	1 cut(s)	329
MlyI	GAGTC	2 cut(s)	243, 850
MseI	TTAA	4 cut(s)	50, 80, 380, 728
MspI	CCGG	3 cut(s)	34, 68, 682
MspR9I	CCNGG	2 cut(s)	35, 951
MunI	CAATTG	4 cut(s)	99, 192, 282, 407
Mva1269I	GAATGC	1 cut(s)	801
MvaI	CCWGG	1 cut(s)	951
MwoI	GCNNNNNNNGC	2 cut(s)	25, 599
NciI	CCSGG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	3 cut(s)	293, 684, 1207
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	6 cut(s)	209, 220, 352, 429, 1102, 1166
NlaIV	GGNNCC	5 cut(s)	327, 420, 457, 491, 753
NmeAIII	GCCGAG	1 cut(s)	1191
NspI	RCATGY	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	1248
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	635, 928
PkrI	GCNGC	2 cut(s)	503, 592
PleI	GAGTC	2 cut(s)	243, 850
PmaCI	CACGTG	1 cut(s)	676
PmlI	CACGTG	1 cut(s)	676
PpsI	GAGTC	2 cut(s)	243, 850
Ppu21I	YACGTR	1 cut(s)	676
PpuMI	RGGWCCY	1 cut(s)	419
Psp1406I	AACGTT	1 cut(s)	1242
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	949
PspCI	CACGTG	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	949
PspN4I	GGNNCC	5 cut(s)	327, 420, 457, 491, 753
PspOMI	GGGCCC	1 cut(s)	325
PspPI	GGNCC	5 cut(s)	200, 325, 326, 419, 455
PspPPI	RGGWCCY	1 cut(s)	419
PstNI	CAGNNNCTG	2 cut(s)	718, 1136
PsuI	RGATCY	2 cut(s)	293, 1207
RsaI	GTAC	2 cut(s)	315, 753
RsaNI	GTAC	2 cut(s)	314, 752
SapI	GCTCTTC	1 cut(s)	1248
SaqAI	TTAA	4 cut(s)	50, 80, 380, 728
SatI	GCNGC	2 cut(s)	502, 591
Sau3AI	GATC	3 cut(s)	293, 684, 1207
Sau96I	GGNCC	5 cut(s)	200, 325, 326, 419, 455
SchI	GAGTC	2 cut(s)	243, 850
ScrFI	CCNGG	2 cut(s)	35, 951
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	3 cut(s)	37, 284, 1211
SinI	GGWCC	3 cut(s)	200, 419, 455
SmlI	CTYRAG	2 cut(s)	1151, 1247
SmoI	CTYRAG	2 cut(s)	1151, 1247
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	2 cut(s)	161, 173
StyD4I	CCNGG	2 cut(s)	33, 949
TaaI	ACNGT	6 cut(s)	94, 318, 403, 714, 1040, 1087
TaiI	ACGT	2 cut(s)	678, 1245
TaqI	TCGA	1 cut(s)	42
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	635, 928
Tru1I	TTAA	4 cut(s)	50, 80, 380, 728
Tru9I	TTAA	4 cut(s)	50, 80, 380, 728
TscAI	CASTG	4 cut(s)	97, 368, 561, 1045
TseI	GCWGC	2 cut(s)	501, 590
TspDTI	ATGAA	9 cut(s)	17, 222, 365, 414, 459, 568, 638, 1105, 1179
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	4 cut(s)	97, 368, 561, 1045
VpaK11BI	GGWCC	3 cut(s)	200, 419, 455
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	2 cut(s)	161, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.