Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Forward (+)

40976334 .. 40980867

Gene Structure 4534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGGTCACGTAAGCGAGCAAACTCTGCTTCTTCATCCTCACAGCGTAGTGCCGGCACTGCGATCTCAGGGATCCGCAAGGCGCATCAAGAGGAACTAGATAACTTGACACTAACTGCACAACCCTTCAAAACATTGAAGTTTTTCATTTTGTATGTACATCAATATGTTAAGAGTTCAATATTGTACTTGTTGGCTAGAGGTGGCTGGCTCCTGCTGTTGAGTGCTGTGGTATTGTCTCTTGGAATTCTTCTAGTGACCATTGACGGCTCCCATGACAAACATTTCGAGGAGCTTTTCAAATATTTCCAATTTGGGTTATGGTGGGTGGCCCTTGGAGTTGCATCTTCAATTGGTCTTGGATCTGGTTTGCACACTTTTGTCCTATATCTGGGTCCTCACATTGCGTTCTTTACTATAAAAGCTATGCAGTGTGGCCGAGTTGATTTAAAAAGTGCTCCTTATGATACAATACAGCTAAACAGTGGTCCTTCGTGGCTTGACAGAAACTGCTCTGAGTTTGGAGCCCCATTGTTTTCTTCATCACATGGTGTGCGGGTTCCACTAAGCAGCATATTACCACAGGTCCAGTTAGAAGCTGTTTTATGGGGTATTGGGACTGCAATTGGTGAACTTCCTCCATATTTCATCTCAAGAGCAGCAAGCTTAGCTGGTAACAAGATGGATGCAATGGAAGAATTGGATACCTCCTCAGATGAAGTACAAGGGTTCATGGCTACTCGCCTATACCAAATCAAATGCTGGCTTCTATCACACTCACAGCAATTGAATTTCTTTACAATCTTAGTGCTTGCTTCGGTGCCAAATCCTCTTTTTGACCTAGCAGGCATTATGTGTGGACAATTTGGGGTTCCATTTTGGAAATTCTTTCTGGCAACAGTGATTGGAAAGGCTATTATTAAAACTCACCTGCAGACAGTTATCATCATCTCAGTTTGCAACAATCAACTTCTAAACTGGATAGAGAATGAATTGATTTGGGTATTCAGCTTCATACCTGGTTTTGCTGCTGTCCTGCCCAACCTCGTTGCTAAAATCGATGCAGCAAAAGAAAAGTATTTGAGAGCTTCGTACTCCCCATCTCCAAATATCAAGGTGAAAACGTGGGATTTCTCATTTGCATCAATCTGGAACACTTTGGTATGGCTTATGCTATTGAACTTCTTTGTCAAGATTGTTACTTCAACAGCCCAGAGTTATCGGAAGAAAGAGCAGGAAATGGAGCTTGCTTTGTTGACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006887 GO:0006996 GO:0007029 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031984 GO:0032940 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0071840 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

421

Amino Acids

46.84

Weight (kDa)

8.94

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VTT_dom	PF09335	206 - 306	1.4e-06	VTT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	939
Acc36I	ACCTGC	1 cut(s)	939
AccB1I	GGYRCC	1 cut(s)	820
AciI	CCGC	2 cut(s)	76, 556
AclWI	GGATC	3 cut(s)	67, 80, 370
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	3 cut(s)	246, 790, 884
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	4 cut(s)	159, 188, 723, 1094
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	8 cut(s)	130, 139, 180, 301, 351, 790, 1180, 1206
AjnI	CCWGG	1 cut(s)	1018
AluBI	AGCT	9 cut(s)	295, 425, 478, 599, 666, 671, 1011, 1088, 1246
AluI	AGCT	9 cut(s)	295, 425, 478, 599, 666, 671, 1011, 1088, 1246
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	3 cut(s)	67, 80, 370
AlwNI	CAGNNNCTG	1 cut(s)	510
AoxI	GGCC	2 cut(s)	330, 436
ApeKI	GCWGC	4 cut(s)	570, 659, 1028, 1064
ApoI	RAATTY	3 cut(s)	246, 790, 884
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	4 cut(s)	331, 395, 488, 586
AsuHPI	GGTGA	3 cut(s)	641, 920, 1129
AvaII	GGWCC	3 cut(s)	395, 488, 586
BamHI	GGATCC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	820
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	4 cut(s)	582, 671, 1015, 1076
BccI	CCATC	2 cut(s)	676, 1108
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	1020
BciVI	GTATCC	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	4 cut(s)	98, 198, 254, 842
BfmI	CTRYAG	1 cut(s)	932
BfuAI	ACCTGC	1 cut(s)	939
BfuI	GTATCC	1 cut(s)	697
BisI	GCNGC	4 cut(s)	571, 660, 1029, 1065
BlpI	GCTNAGC	1 cut(s)	667
BlsI	GCNGC	4 cut(s)	572, 661, 1030, 1066
Bme1390I	CCNGG	1 cut(s)	1020
Bme18I	GGWCC	3 cut(s)	395, 488, 586
BmgT120I	GGNCC	4 cut(s)	331, 395, 488, 586
BmiI	GGNNCC	8 cut(s)	74, 212, 271, 396, 526, 561, 822, 873
BmrFI	CCNGG	1 cut(s)	1020
BmsI	GCATC	5 cut(s)	94, 353, 676, 1051, 1151
Bpu1102I	GCTNAGC	1 cut(s)	667
BpuEI	CTTGAG	1 cut(s)	637
Bsa29I	ATCGAT	1 cut(s)	1059
BsaAI	YACGTR	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	589, 983
Bse3DI	GCAATG	2 cut(s)	402, 696
BseBI	CCWGG	1 cut(s)	1020
BseCI	ATCGAT	1 cut(s)	1059
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	35, 691
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	2 cut(s)	402, 696
BseMII	CTCAG	4 cut(s)	81, 507, 726, 966
BseNI	ACTGG	2 cut(s)	589, 983
BseRI	GAGGAG	2 cut(s)	305, 700
BseXI	GCAGC	4 cut(s)	582, 671, 1015, 1076
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	332, 438
BshNI	GGYRCC	1 cut(s)	820
BshVI	ATCGAT	1 cut(s)	1059
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	631
BsnI	GGCC	2 cut(s)	332, 438
Bsp1286I	GDGCHC	2 cut(s)	460, 529
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	63, 72, 362
Bsp1720I	GCTNAGC	1 cut(s)	667
BspACI	CCGC	2 cut(s)	76, 556
BspANI	GGCC	2 cut(s)	332, 438
BspCNI	CTCAG	4 cut(s)	80, 508, 725, 965
BspDI	ATCGAT	1 cut(s)	1059
BspLI	GGNNCC	8 cut(s)	74, 212, 271, 396, 526, 561, 822, 873
BspMAI	CTGCAG	1 cut(s)	936
BspMI	ACCTGC	1 cut(s)	939
BspPI	GGATC	3 cut(s)	67, 80, 370
BspT107I	GGYRCC	1 cut(s)	820
BsrDI	GCAATG	2 cut(s)	402, 696
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	589, 983
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	3 cut(s)	63, 72, 362
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	1020
Bst4CI	ACNGT	3 cut(s)	485, 901, 940
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	157
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	8 cut(s)	18, 55, 209, 664, 764, 813, 847, 1248
BstDEI	CTNAG	7 cut(s)	67, 516, 566, 667, 712, 805, 952
BstF5I	GGATG	2 cut(s)	35, 691
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	3 cut(s)	66, 75, 365
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	3 cut(s)	63, 72, 362
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 59, 668
BstNI	CCWGG	1 cut(s)	1020
BstSCI	CCNGG	1 cut(s)	1018
BstSFI	CTRYAG	1 cut(s)	932
BstV1I	GCAGC	4 cut(s)	582, 671, 1015, 1076
BstX2I	RGATCY	2 cut(s)	72, 362
BstYI	RGATCY	2 cut(s)	72, 362
Bsu15I	ATCGAT	1 cut(s)	1059
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	2 cut(s)	332, 438
BsuTUI	ATCGAT	1 cut(s)	1059
BtsCI	GGATG	2 cut(s)	35, 691
BtsI	GCAGTG	2 cut(s)	57, 437
BtsIMutI	CAGTG	4 cut(s)	57, 437, 490, 906
BveI	ACCTGC	1 cut(s)	939
Cac8I	GCNNGC	8 cut(s)	18, 55, 209, 664, 764, 813, 847, 1248
CaiI	CAGNNNCTG	1 cut(s)	510
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	4 cut(s)	331, 395, 488, 586
ClaI	ATCGAT	1 cut(s)	1059
CsiI	ACCWGGT	1 cut(s)	1018
Csp6I	GTAC	4 cut(s)	158, 187, 722, 1093
CviAII	CATG	3 cut(s)	275, 548, 733
CviQI	GTAC	4 cut(s)	158, 187, 722, 1093
DdeI	CTNAG	7 cut(s)	67, 516, 566, 667, 712, 805, 952
DpnI	GATC	3 cut(s)	65, 74, 364
DpnII	GATC	3 cut(s)	63, 72, 362
DraI	TTTAAA	1 cut(s)	450
DraIII	CACNNNGTG	1 cut(s)	551
EaeI	YGGCCR	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	3 cut(s)	395, 488, 586
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	1018
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	278, 551, 736
FalI	AAGNNNNNCTT	2 cut(s)	445, 477
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	3 cut(s)	274, 547, 732
FauI	CCCGC	1 cut(s)	549
Fnu4HI	GCNGC	4 cut(s)	571, 660, 1029, 1065
FokI	GGATG	2 cut(s)	22, 698
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	4 cut(s)	571, 660, 1029, 1065
FspBI	CTAG	4 cut(s)	98, 198, 254, 842
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	4 cut(s)	571, 660, 1029, 1065
HaeIII	GGCC	2 cut(s)	332, 438
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	278, 551, 736
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	1257
HindII	GTYRAC	1 cut(s)	1257
HindIII	AAGCTT	1 cut(s)	664
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	641, 920, 1129
Hpy166II	GTNNAC	3 cut(s)	632, 860, 1257
Hpy188I	TCNGA	3 cut(s)	517, 715, 1224
Hpy188III	TCNNGA	4 cut(s)	89, 654, 1150, 1192
Hpy8I	GTNNAC	3 cut(s)	632, 860, 1257
HpyAV	CCTTC	2 cut(s)	136, 501
HpyCH4III	ACNGT	3 cut(s)	485, 901, 940
HpyCH4IV	ACGT	2 cut(s)	10, 1124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 59, 668
HpyF3I	CTNAG	7 cut(s)	67, 516, 566, 667, 712, 805, 952
HpySE526I	ACGT	2 cut(s)	10, 1124
Hsp92II	CATG	3 cut(s)	278, 551, 736
HspAI	GCGC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	63, 72, 362
LmnI	GCTCC	6 cut(s)	216, 275, 292, 463, 524, 1243
Lsp1109I	GCAGC	4 cut(s)	582, 671, 1015, 1076
LweI	GCATC	5 cut(s)	94, 353, 676, 1051, 1151
MabI	ACCWGGT	1 cut(s)	1018
MaeI	CTAG	4 cut(s)	98, 198, 254, 842
MaeII	ACGT	2 cut(s)	10, 1124
MaeIII	GTNAC	4 cut(s)	6, 256, 674, 1198
MalI	GATC	3 cut(s)	65, 74, 364
MboI	GATC	3 cut(s)	63, 72, 362
MboII	GAAGA	6 cut(s)	24, 242, 339, 531, 707, 1237
MfeI	CAATTG	3 cut(s)	351, 624, 785
MflI	RGATCY	2 cut(s)	72, 362
MhlI	GDGCHC	2 cut(s)	460, 529
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	3 cut(s)	171, 449, 921
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	1020
MunI	CAATTG	3 cut(s)	351, 624, 785
MvaI	CCWGG	1 cut(s)	1020
MwoI	GCNNNNNNNGC	3 cut(s)	26, 59, 668
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	3 cut(s)	63, 72, 362
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	278, 551, 736
NlaIV	GGNNCC	8 cut(s)	74, 212, 271, 396, 526, 561, 822, 873
NmeAIII	GCCGAG	1 cut(s)	464
NmuCI	GTSAC	2 cut(s)	6, 256
PaqCI	CACCTGC	1 cut(s)	939
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	572, 661, 1030, 1066
Ppu21I	YACGTR	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	1018
PspGI	CCWGG	1 cut(s)	1018
PspN4I	GGNNCC	8 cut(s)	74, 212, 271, 396, 526, 561, 822, 873
PspPI	GGNCC	4 cut(s)	331, 395, 488, 586
PspPPI	RGGWCCY	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	936
PstNI	CAGNNNCTG	1 cut(s)	510
PsuI	RGATCY	2 cut(s)	72, 362
RsaI	GTAC	4 cut(s)	159, 188, 723, 1094
RsaNI	GTAC	4 cut(s)	158, 187, 722, 1093
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	171, 449, 921
SatI	GCNGC	4 cut(s)	571, 660, 1029, 1065
Sau3AI	GATC	3 cut(s)	63, 72, 362
Sau96I	GGNCC	4 cut(s)	331, 395, 488, 586
ScrFI	CCNGG	1 cut(s)	1020
SduI	GDGCHC	2 cut(s)	460, 529
SexAI	ACCWGGT	1 cut(s)	1018
SfaNI	GCATC	5 cut(s)	94, 353, 676, 1051, 1151
SfcI	CTRYAG	1 cut(s)	932
SinI	GGWCC	3 cut(s)	395, 488, 586
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	652
SmoI	CTYRAG	1 cut(s)	652
SsiI	CCGC	2 cut(s)	76, 556
SspI	AATATT	2 cut(s)	183, 305
SspMI	CTAG	4 cut(s)	98, 198, 254, 842
StyD4I	CCNGG	1 cut(s)	1018
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	485, 901, 940
TaiI	ACGT	2 cut(s)	13, 1127
TaqI	TCGA	2 cut(s)	288, 1059
TatI	WGTACW	3 cut(s)	157, 186, 721
Tru1I	TTAA	3 cut(s)	171, 449, 921
Tru9I	TTAA	3 cut(s)	171, 449, 921
TscAI	CASTG	4 cut(s)	64, 437, 490, 906
TseFI	GTSAC	2 cut(s)	6, 256
TseI	GCWGC	4 cut(s)	570, 659, 1028, 1064
Tsp45I	GTSAC	2 cut(s)	6, 256
TspDTI	ATGAA	8 cut(s)	24, 136, 531, 637, 721, 732, 1003, 1005
TspRI	CASTG	4 cut(s)	64, 437, 490, 906
VpaK11BI	GGWCC	3 cut(s)	395, 488, 586
XapI	RAATTY	3 cut(s)	246, 790, 884
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	4 cut(s)	98, 198, 254, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.