Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Reverse (-)

4367925 .. 4371195

Gene Structure 3271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG063400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATCTCCCTGATTCGCCCCCTTCAAAACCCATGGATTCGCCCGTCTCCGGATCTGGTTTGCACACATTTGTACTGTATTTGGGCCCTCATATAGCTCTGTTTACCATGAAAGCCGTGCAGTGTGGCAGAGTTGACTTAAAAATTGCCCCATATGATACCGTTCAATTGAAAACGGGTCCTTCATGGATGGATAGAAACTGCTCTGACTATGGTCCCCCACTATTTTCATCCCAGCAAGGTTCAAGGCTCCCACTTAGCAGCATACTGCCTCAGGTTCAGTTAGAGGCTATTCTGTGGGGAATTGGAACTGCACTGGGAGAGCTTCCTCCATTTTTCATATCAAGAGCGGCTCGTATAGCAGGGAGTGAATTGGAAGTAATGAAAGAATTGGATTCTTCTTCAACTGAAGATGGTGGAGTTGTAGCTAATCACGTGAACCGGATCAAACTATGGCTTCTTTCACATTCACAGTATCTGAACTTTTTAACGATATTAGTTCTTGCTTCGGTACCCAACCCTCTATTTGACCTTGCTGGTATAATGTGTGGACAATTTGGCATTCCATTTTGGACATTCTTTATCTCAACACTGATTGGAAAGGCATTTATCAAGACTCACATACAGACCATTTTCCTCATCTCAGTTTGCAACAATCAACTTCTTGACTTGGTAGAAAATAGATTGATTCGGTTGCTCAGCATTTTCCCTGGATTTGGTTTGATTGCGCCCAAACTGATTGCCAAACTACATATTTTGAAAGAGAAGTATATGGATGGCTCTCCTTCAGTTATCTCAAACAGCGAGGTGAAAAAGTGGAACTTCTCTATTGGTGCAATTTGGAATACTGTTGTGTGGCTCATGCTCATCAACTTTTTCATCAAGATTGTGTCGGCAACTGCACAAACCGTTCTCAAGGAAGAACATGAAAAGGAGTTGACTGCATTGACGAACAATGTACAGGCATCAGATCTCGGCAAGGTTGTGTCAACAACTGCACAAAACGTTCTCAAGGAAGAGCAGAAAAAGGAGTTGGCTGCAAAGCAACTGGCTGACGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

39.06

Weight (kDa)

6.66

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	350
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	1 cut(s)	350
AclI	AACGTT	1 cut(s)	1005
AclWI	GGATC	3 cut(s)	12, 61, 452
AcuI	CTGAAG	2 cut(s)	429, 771
AcvI	CACGTG	1 cut(s)	436
AfaI	GTAC	3 cut(s)	75, 513, 960
AfiI	CCNNNNNNNGG	2 cut(s)	50, 716
AgsI	TTSAA	6 cut(s)	27, 167, 172, 246, 405, 760
AjnI	CCWGG	1 cut(s)	709
AjuI	GAANNNNNNNTTGG	2 cut(s)	1016, 1048
AluBI	AGCT	3 cut(s)	98, 325, 428
AluI	AGCT	3 cut(s)	98, 325, 428
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	3 cut(s)	12, 61, 452
AlwNI	CAGNNNCTG	1 cut(s)	478
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	1 cut(s)	85
ApaI	GGGCCC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	261, 1037
Asp718I	GGTACC	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	730
AspS9I	GGNCC	4 cut(s)	85, 86, 179, 215
AsuHPI	GGTGA	1 cut(s)	820
AvaII	GGWCC	2 cut(s)	179, 215
AxyI	CCTNAGG	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	89
BbrPI	CACGTG	1 cut(s)	436
BbvI	GCAGC	2 cut(s)	273, 1024
BccI	CCATC	3 cut(s)	184, 407, 770
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	52
BglII	AGATCT	1 cut(s)	970
BisI	GCNGC	3 cut(s)	262, 351, 1038
BlpI	GCTNAGC	1 cut(s)	698
BlsI	GCNGC	3 cut(s)	263, 352, 1039
Bme1390I	CCNGG	1 cut(s)	711
Bme18I	GGWCC	2 cut(s)	179, 215
BmgT120I	GGNCC	4 cut(s)	85, 86, 179, 215
BmiI	GGNNCC	5 cut(s)	87, 180, 217, 251, 513
BmrFI	CCNGG	1 cut(s)	711
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	974
BmuI	ACTGGG	1 cut(s)	326
BoxI	GACNNNNGTC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	698
BpuEI	CTTGAG	2 cut(s)	899, 995
BsaAI	YACGTR	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	33, 709
BsaWI	WCCGGW	2 cut(s)	50, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 716
Bse1I	ACTGG	2 cut(s)	321, 1053
Bse21I	CCTNAGG	1 cut(s)	273
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	33, 709
BseGI	GGATG	3 cut(s)	195, 230, 781
BseLI	CCNNNNNNNGG	2 cut(s)	50, 716
BseMII	CTCAG	3 cut(s)	287, 657, 712
BseNI	ACTGG	2 cut(s)	321, 1053
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	273, 1024
BseYI	CCCAGC	1 cut(s)	234
BsgI	GTGCAG	4 cut(s)	140, 297, 885, 981
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	51, 442
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	50, 716
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	1 cut(s)	87
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	958
Bsp143I	GATC	4 cut(s)	4, 53, 444, 970
Bsp1720I	GCTNAGC	1 cut(s)	698
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	286, 656, 711
BspEI	TCCGGA	1 cut(s)	50
BspLI	GGNNCC	5 cut(s)	87, 180, 217, 251, 513
BspPI	GGATC	3 cut(s)	12, 61, 452
BspQI	GCTCTTC	1 cut(s)	1011
BspT107I	GGYRCC	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	958
BsrI	ACTGG	2 cut(s)	321, 1053
BssECI	CCNNGG	2 cut(s)	33, 709
BssMI	GATC	4 cut(s)	4, 53, 444, 970
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	5 cut(s)	78, 163, 474, 850, 910
Bst6I	CTCTTC	1 cut(s)	1011
BstAUI	TGTACA	1 cut(s)	958
BstBAI	YACGTR	1 cut(s)	436
BstDEI	CTNAG	4 cut(s)	257, 273, 643, 698
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	195, 230, 781
BstHHI	GCGC	1 cut(s)	730
BstKTI	GATC	4 cut(s)	7, 56, 447, 973
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	4 cut(s)	4, 53, 444, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	711
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	709
BstSLI	GKGCMC	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	273, 1024
BstX2I	RGATCY	3 cut(s)	4, 53, 970
BstYI	RGATCY	3 cut(s)	4, 53, 970
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	195, 230, 781
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	3 cut(s)	128, 314, 590
CaiI	CAGNNNCTG	1 cut(s)	478
CfoI	GCGC	1 cut(s)	730
Cfr13I	GGNCC	4 cut(s)	85, 86, 179, 215
Csp6I	GTAC	3 cut(s)	74, 512, 959
CviAII	CATG	5 cut(s)	34, 109, 186, 862, 926
CviQI	GTAC	3 cut(s)	74, 512, 959
DdeI	CTNAG	4 cut(s)	257, 273, 643, 698
DpnI	GATC	4 cut(s)	6, 55, 446, 972
DpnII	GATC	4 cut(s)	4, 53, 444, 970
Eam1104I	CTCTTC	1 cut(s)	1011
EarI	CTCTTC	1 cut(s)	1011
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	179, 215
Eco57I	CTGAAG	2 cut(s)	429, 771
Eco72I	CACGTG	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	2 cut(s)	86, 179
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	5 cut(s)	37, 112, 189, 865, 929
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	5 cut(s)	33, 108, 185, 861, 925
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	262, 351, 1038
FokI	GGATG	3 cut(s)	202, 217, 788
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	262, 351, 1038
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	3 cut(s)	262, 351, 1038
GsaI	CCCAGC	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	2 cut(s)	51, 442
HhaI	GCGC	1 cut(s)	730
Hin1II	CATG	5 cut(s)	37, 112, 189, 865, 929
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HincII	GTYRAC	3 cut(s)	136, 939, 990
HindII	GTYRAC	3 cut(s)	136, 939, 990
HinfI	GANTC	5 cut(s)	14, 38, 395, 616, 688
HpaII	CCGG	2 cut(s)	51, 442
HphI	GGTGA	1 cut(s)	820
Hpy166II	GTNNAC	6 cut(s)	105, 136, 439, 551, 939, 990
Hpy188I	TCNGA	3 cut(s)	208, 480, 970
Hpy188III	TCNNGA	5 cut(s)	51, 345, 613, 665, 883
Hpy8I	GTNNAC	6 cut(s)	105, 136, 439, 551, 939, 990
HpyAV	CCTTC	3 cut(s)	33, 192, 795
HpyCH4III	ACNGT	5 cut(s)	78, 163, 474, 850, 910
HpyCH4IV	ACGT	2 cut(s)	435, 1005
HpyCH4V	TGCA	9 cut(s)	64, 121, 314, 651, 836, 902, 944, 998, 1040
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	4 cut(s)	257, 273, 643, 698
HpySE526I	ACGT	2 cut(s)	435, 1005
Hsp92II	CATG	5 cut(s)	37, 112, 189, 865, 929
HspAI	GCGC	1 cut(s)	728
Kpn2I	TCCGGA	1 cut(s)	50
KpnI	GGTACC	1 cut(s)	515
Kzo9I	GATC	4 cut(s)	4, 53, 444, 970
LguI	GCTCTTC	1 cut(s)	1011
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	2 cut(s)	273, 1024
LweI	GCATC	1 cut(s)	974
MaeII	ACGT	2 cut(s)	435, 1005
MalI	GATC	4 cut(s)	6, 55, 446, 972
MbiI	CCGCTC	1 cut(s)	350
MboI	GATC	4 cut(s)	4, 53, 444, 970
MboII	GAAGA	5 cut(s)	390, 393, 422, 932, 1028
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	3 cut(s)	4, 53, 970
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	7 cut(s)	144, 167, 303, 371, 389, 554, 837
MlyI	GAGTC	1 cut(s)	610
MnlI	CCTC	7 cut(s)	99, 280, 282, 339, 531, 647, 799
MroI	TCCGGA	1 cut(s)	50
MseI	TTAA	2 cut(s)	140, 488
MspI	CCGG	2 cut(s)	51, 442
MspR9I	CCNGG	1 cut(s)	711
MunI	CAATTG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	711
MwoI	GCNNNNNNNGC	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	33
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	4 cut(s)	4, 53, 444, 970
NlaIII	CATG	5 cut(s)	37, 112, 189, 865, 929
NlaIV	GGNNCC	5 cut(s)	87, 180, 217, 251, 513
NmeAIII	GCCGAG	1 cut(s)	954
PciSI	GCTCTTC	1 cut(s)	1011
PctI	GAATGC	1 cut(s)	561
PfeI	GAWTC	4 cut(s)	14, 38, 395, 688
PkrI	GCNGC	3 cut(s)	263, 352, 1039
PleI	GAGTC	1 cut(s)	610
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	610
Ppu21I	YACGTR	1 cut(s)	436
PpuMI	RGGWCCY	1 cut(s)	179
PshAI	GACNNNNGTC	1 cut(s)	213
Psp1406I	AACGTT	1 cut(s)	1005
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	709
PspCI	CACGTG	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	5 cut(s)	87, 180, 217, 251, 513
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	4 cut(s)	85, 86, 179, 215
PspPPI	RGGWCCY	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	3 cut(s)	4, 53, 970
RsaI	GTAC	3 cut(s)	75, 513, 960
RsaNI	GTAC	3 cut(s)	74, 512, 959
SapI	GCTCTTC	1 cut(s)	1011
SaqAI	TTAA	2 cut(s)	140, 488
SatI	GCNGC	3 cut(s)	262, 351, 1038
Sau3AI	GATC	4 cut(s)	4, 53, 444, 970
Sau96I	GGNCC	4 cut(s)	85, 86, 179, 215
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	1 cut(s)	711
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	974
SinI	GGWCC	2 cut(s)	179, 215
SmlI	CTYRAG	2 cut(s)	914, 1010
SmoI	CTYRAG	2 cut(s)	914, 1010
Sse9I	AATT	7 cut(s)	144, 167, 303, 371, 389, 554, 837
SsiI	CCGC	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	709
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	5 cut(s)	78, 163, 474, 850, 910
TaiI	ACGT	2 cut(s)	438, 1008
TasI	AATT	7 cut(s)	144, 167, 303, 371, 389, 554, 837
TatI	WGTACW	2 cut(s)	73, 958
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	4 cut(s)	14, 38, 395, 688
Tru1I	TTAA	2 cut(s)	140, 488
Tru9I	TTAA	2 cut(s)	140, 488
TscAI	CASTG	3 cut(s)	128, 321, 597
TseI	GCWGC	2 cut(s)	261, 1037
TspDTI	ATGAA	7 cut(s)	125, 174, 219, 328, 398, 868, 942
TspRI	CASTG	3 cut(s)	128, 321, 597
VpaK11BI	GGWCC	2 cut(s)	179, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.