Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Reverse (-)

18401545 .. 18403260

Gene Structure 1716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGACAATTGGCGGACCACATGAAAAGGACTTTGTACCATTATTGGATGTGGTTTTTGATTGGATGGAGCTTTTCCGTTATCTGCAATTTGGACTCTTGTGGCTGGTTCTTGGTGTGGCGTCATCAATTGGTCTTGGATCTGGTTTGCACACATTTGTACTGTATTTGGGCCCTCATATAGCTCTATTTACCATGAAAGTCGTGCAGTGTGGCAGAGTTGACTTAAAAATTGCCCCATATGTTACCGTTCAATTGAAAACAGGTCCTTCATGGATGGATAGAAACTGCACTGAATATGGTCCCCCACTATTTTCATCCCAGCAAGGTTCAAGGCTCCCACTTAGTAGCATACTGCCTCAGGTTCAGTTAGAGGCTATTCTATGGGGAATTGGAACTGCACTGGGAGAGCTTCCTCCATTTTTCATATCAAGAGCTGGGAGTGAATTGGAAGTAATGAAAGAATTGGATTCTTCTTCAACTAAAGATGGTGGAGTTGTACCCAACCCTCTATTTGACCTTGCTGGTATAATGTGTGGACAATTTGGCATTCCATTTTGGACATTCTTTATCTCAACAATGATTGCAAAGGCATTTATCAAGACTCACATACAGGTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.67

Weight (kDa)

5.75

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	3 cut(s)	36, 159, 498
AgsI	TTSAA	4 cut(s)	251, 256, 330, 477
AluBI	AGCT	4 cut(s)	70, 182, 409, 434
AluI	AGCT	4 cut(s)	70, 182, 409, 434
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	169
ApaI	GGGCCC	1 cut(s)	173
AspS9I	GGNCC	5 cut(s)	14, 169, 170, 263, 299
AvaII	GGWCC	3 cut(s)	14, 263, 299
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	173
BccI	CCATC	3 cut(s)	58, 268, 479
Bme18I	GGWCC	3 cut(s)	14, 263, 299
BmgT120I	GGNCC	5 cut(s)	14, 169, 170, 263, 299
BmiI	GGNNCC	3 cut(s)	171, 301, 335
BmrI	ACTGGG	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	405
Bse21I	CCTNAGG	1 cut(s)	357
BseGI	GGATG	4 cut(s)	52, 69, 279, 314
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	405
BseSI	GKGCMC	1 cut(s)	173
BseYI	CCCAGC	2 cut(s)	318, 434
BsgI	GTGCAG	3 cut(s)	224, 271, 381
BshFI	GGCC	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	1 cut(s)	171
Bsp120I	GGGCCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	171, 301, 335
BspPI	GGATC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	405
BssMI	GATC	1 cut(s)	137
BssNI	GRCGYC	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	162, 247
BstACI	GRCGYC	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	341, 357
BstF5I	GGATG	4 cut(s)	52, 69, 279, 314
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	4 cut(s)	52, 69, 279, 314
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	3 cut(s)	212, 288, 398
Cfr13I	GGNCC	5 cut(s)	14, 169, 170, 263, 299
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	35, 158, 497
CviAII	CATG	3 cut(s)	20, 193, 270
CviJI	RGCY	8 cut(s)	70, 103, 171, 182, 334, 374, 409, 434
CviKI_1	RGCY	8 cut(s)	70, 103, 171, 182, 334, 374, 409, 434
CviQI	GTAC	3 cut(s)	35, 158, 497
DdeI	CTNAG	2 cut(s)	341, 357
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
EciI	GGCGGA	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	3 cut(s)	14, 263, 299
Eco81I	CCTNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	2 cut(s)	170, 263
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	3 cut(s)	23, 196, 273
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	3 cut(s)	19, 192, 269
FauNDI	CATATG	1 cut(s)	238
FokI	GGATG	4 cut(s)	59, 76, 286, 301
FriOI	GRGCYC	1 cut(s)	173
GsaI	CCCAGC	2 cut(s)	322, 438
HaeIII	GGCC	1 cut(s)	171
HgaI	GACGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	23, 196, 273
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	3 cut(s)	93, 467, 601
Hpy166II	GTNNAC	2 cut(s)	220, 536
Hpy188III	TCNNGA	2 cut(s)	429, 598
Hpy8I	GTNNAC	2 cut(s)	220, 536
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	2 cut(s)	162, 247
HpyCH4V	TGCA	6 cut(s)	85, 148, 205, 288, 398, 584
HpyF3I	CTNAG	2 cut(s)	341, 357
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	23, 196, 273
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	67, 339
LpnPI	CCDG	9 cut(s)	89, 126, 246, 332, 344, 386, 420, 507, 596
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	462, 465
MfeI	CAATTG	3 cut(s)	6, 126, 251
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	9 cut(s)	6, 86, 126, 228, 251, 387, 443, 461, 539
MlyI	GAGTC	2 cut(s)	87, 595
MnlI	CCTC	5 cut(s)	183, 364, 366, 423, 516
MseI	TTAA	2 cut(s)	224, 619
MunI	CAATTG	3 cut(s)	6, 126, 251
Mva1269I	GAATGC	1 cut(s)	546
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	3 cut(s)	23, 196, 273
NlaIV	GGNNCC	3 cut(s)	171, 301, 335
PctI	GAATGC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	467
PleI	GAGTC	2 cut(s)	87, 595
PpsI	GAGTC	2 cut(s)	87, 595
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
PspFI	CCCAGC	2 cut(s)	318, 434
PspN4I	GGNNCC	3 cut(s)	171, 301, 335
PspOMI	GGGCCC	1 cut(s)	169
PspPI	GGNCC	5 cut(s)	14, 169, 170, 263, 299
PspPPI	RGGWCCY	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	3 cut(s)	36, 159, 498
RsaNI	GTAC	3 cut(s)	35, 158, 497
SaqAI	TTAA	2 cut(s)	224, 619
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	5 cut(s)	14, 169, 170, 263, 299
SchI	GAGTC	2 cut(s)	87, 595
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	9 cut(s)	72, 184, 265, 328, 363, 411, 436, 519, 615
SinI	GGWCC	3 cut(s)	14, 263, 299
Sse9I	AATT	9 cut(s)	6, 86, 126, 228, 251, 387, 443, 461, 539
SsiI	CCGC	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	162, 247
TasI	AATT	9 cut(s)	6, 86, 126, 228, 251, 387, 443, 461, 539
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	2 cut(s)	224, 619
Tru9I	TTAA	2 cut(s)	224, 619
TscAI	CASTG	3 cut(s)	212, 295, 405
TspDTI	ATGAA	6 cut(s)	36, 209, 258, 303, 412, 470
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	3 cut(s)	212, 295, 405
VpaK11BI	GGWCC	3 cut(s)	14, 263, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.