Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Reverse (-)

873571 .. 878319

Gene Structure 4749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G011300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGGGTCCCGTAAACAAGCAAATTCTTCTTCTTCGTCACCACCTTCGTCCTCTCAGCGCACGGAAATTTCGATCTCAGGGCTCAGTGAGAAGCATCAAGAGGAACTAGAAAACTTGACACTAACAACACAACCCTTCAGAACATTGAAGTTTTTCATTTTGGCTGTAGTTCAATATGTGAAGCGTTCAATATCATATCTGTTGGCAAAAGGTGGTTGGCTTATGCTTTTGAGTACTGTCGTAGCGTCACTTGGAATTCTTCTAGTGACCATTGATGGCCCTCATGAGAAGCATGTTGAGGAACTTCTCAAATATTTCCAGTTCGGGCTATGGTGGGTGGCACTTGGAGTTGCATCATCAATTGGTCTTGGATCTGGTTTGCACACGTTTGTCCTATATCTGGGTCCTCATATTGCCTTCTTTACTTTAAAGGCGATGCAGTGTGGTCGAGTTGATTTAAAAAGTGCTCCCTATGATACAATACAGCTAAAAAGAGGTCCTTCGTGGCTTGGGAAAAACTGCTCTGAATTTGGGCCCCCATTGTTTCCGTCATTACATGGTTTGCGGGTTCCACTTAGCAGCATATTACCTCAGGTCCAGCTAGAGGCTATTTTATGGGGTGTTGGGACTGCAATTGGAGAGCTTCCTCCATATTTTATCTCAAGAGCAGCAAGCTTATCTGGCGACAAAGTGGATGGCATGGAAGAATTGGATGCCCCCTCAGATGAAGGAACAGGATTCATAGCTACTCATCTAAACCGAGTCAAACGCTGGCTTCTATCACACTCACAACAGTTTAACTTCTTTACGATCTTAGTGCTTGCTTCGGTGCCAAATCCTCTTTTTGACCTGGCTGGCATTATGTGTGGACAATTTGGTATTCCATTCTGGAAATTTTTCCTTGCAACAGTGATTGGAAAGGCAATTATTAAAACTCATCTACAGACGGTCTTCATCATCTCAGTTTGCAACAATCAACTTCTTAATTGGATAGAGAATGAATTGATTTGGGTTTTCAGTCTCATTCCTGGTTTTGCTGCTGTCCTGCCTAACCTCATTGCCAAAATTGATGCGGCAAAAGAAAAATATCTCACAGCTTCTTCTGTATCCTCAAATATCAAGGTGAAAACGTGGGATTTCTCTTTTGCATCAATTTGGAACACTCTGGTCTGGCTTATGCTATTCAACTTCTTTGTCAAGATTGTGAATGCAACTGCTCAGAGGTATCTGAAGAAACAGCAGGAAAAGGAGCTTGCTTTGTTGACAAAGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006887 GO:0006996 GO:0007029 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031984 GO:0032940 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0071840 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

426

Amino Acids

47.21

Weight (kDa)

9.26

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1270
AccB1I	GGYRCC	1 cut(s)	829
AciI	CCGC	2 cut(s)	565, 1073
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	5 cut(s)	22, 66, 255, 527, 893
AcuI	CTGAAG	2 cut(s)	121, 1250
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	400, 604
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	4 cut(s)	148, 173, 189, 1186
AjnI	CCWGG	2 cut(s)	849, 1027
AluBI	AGCT	7 cut(s)	487, 601, 643, 675, 746, 1097, 1252
AluI	AGCT	7 cut(s)	487, 601, 643, 675, 746, 1097, 1252
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	1 cut(s)	1025
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	2 cut(s)	277, 533
ApaI	GGGCCC	1 cut(s)	537
ApeKI	GCWGC	3 cut(s)	579, 668, 1037
ApoI	RAATTY	5 cut(s)	22, 66, 255, 527, 893
Asp700I	GAANNNNTTC	2 cut(s)	152, 896
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	7 cut(s)	6, 278, 404, 497, 533, 534, 595
AsuHPI	GGTGA	2 cut(s)	30, 1135
AvaII	GGWCC	4 cut(s)	6, 404, 497, 595
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	1 cut(s)	537
BanI	GGYRCC	1 cut(s)	829
BanII	GRGCYC	2 cut(s)	84, 537
BbsI	GAAGAC	1 cut(s)	943
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	3 cut(s)	591, 680, 1024
BccI	CCATC	2 cut(s)	269, 689
BcgI	CGANNNNNNTGC	4 cut(s)	428, 462, 799, 833
BciT130I	CCWGG	2 cut(s)	851, 1029
BciVI	GTATCC	1 cut(s)	1117
BcoDI	GTCTC	1 cut(s)	1025
BfaI	CTAG	3 cut(s)	107, 263, 602
BfmI	CTRYAG	2 cut(s)	165, 941
BfuI	GTATCC	1 cut(s)	1117
BisI	GCNGC	4 cut(s)	580, 669, 1038, 1074
BlsI	GCNGC	4 cut(s)	581, 670, 1039, 1075
BmcAI	AGTACT	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	851, 1029
Bme18I	GGWCC	4 cut(s)	6, 404, 497, 595
BmgT120I	GGNCC	7 cut(s)	6, 278, 404, 497, 533, 534, 595
BmiI	GGNNCC	7 cut(s)	7, 8, 405, 535, 536, 570, 831
BmrFI	CCNGG	2 cut(s)	851, 1029
BmsI	GCATC	6 cut(s)	103, 362, 426, 703, 1060, 1157
BpiI	GAAGAC	1 cut(s)	943
BpuEI	CTTGAG	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 604
Bse1I	ACTGG	1 cut(s)	319
Bse21I	CCTNAGG	1 cut(s)	591
Bse3DI	GCAATG	1 cut(s)	1056
BseBI	CCWGG	2 cut(s)	851, 1029
BseGI	GGATG	2 cut(s)	700, 718
BseLI	CCNNNNNNNGG	2 cut(s)	400, 604
BseMI	GCAATG	1 cut(s)	1056
BseMII	CTCAG	7 cut(s)	68, 90, 97, 605, 735, 975, 1232
BseNI	ACTGG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	3 cut(s)	591, 680, 1024
BshFI	GGCC	2 cut(s)	279, 535
BshNI	GGYRCC	1 cut(s)	829
BsiHKAI	GWGCWC	1 cut(s)	469
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	2 cut(s)	400, 604
BsmAI	GTCTC	1 cut(s)	1025
BsmFI	GGGAC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	1213
BsnI	GGCC	2 cut(s)	279, 535
Bsp120I	GGGCCC	1 cut(s)	533
Bsp1286I	GDGCHC	3 cut(s)	84, 469, 537
Bsp143I	GATC	3 cut(s)	72, 371, 810
BspACI	CCGC	2 cut(s)	565, 1073
BspANI	GGCC	2 cut(s)	279, 535
BspCNI	CTCAG	7 cut(s)	67, 89, 96, 604, 734, 974, 1231
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	7 cut(s)	7, 8, 405, 535, 536, 570, 831
BspPI	GGATC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	1056
BsrI	ACTGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	72, 371, 810
Bst2UI	CCWGG	2 cut(s)	851, 1029
Bst4CI	ACNGT	4 cut(s)	238, 795, 910, 949
BstC8I	GCNNGC	5 cut(s)	673, 773, 822, 856, 1254
BstDEI	CTNAG	9 cut(s)	54, 76, 83, 575, 591, 721, 814, 961, 1218
BstF5I	GGATG	2 cut(s)	700, 718
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	75, 374, 813
BstMAI	GTCTC	1 cut(s)	1025
BstMBI	GATC	3 cut(s)	72, 371, 810
BstMWI	GCNNNNNNNGC	1 cut(s)	681
BstNI	CCWGG	2 cut(s)	851, 1029
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	849, 1027
BstSFI	CTRYAG	2 cut(s)	165, 941
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	591, 680, 1024
BstV2I	GAAGAC	1 cut(s)	943
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
Bsu36I	CCTNAGG	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	1117
BsuRI	GGCC	2 cut(s)	279, 535
BtgZI	GCGATG	1 cut(s)	449
BtsCI	GGATG	2 cut(s)	700, 718
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	3 cut(s)	91, 446, 915
Cac8I	GCNNGC	5 cut(s)	673, 773, 822, 856, 1254
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	7 cut(s)	6, 278, 404, 497, 533, 534, 595
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	4 cut(s)	284, 293, 557, 700
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	9 cut(s)	54, 76, 83, 575, 591, 721, 814, 961, 1218
DpnI	GATC	3 cut(s)	74, 373, 812
DpnII	GATC	3 cut(s)	72, 371, 810
DraI	TTTAAA	2 cut(s)	429, 459
DrdI	GACNNNNNNGTC	1 cut(s)	1270
DseDI	GACNNNNNNGTC	1 cut(s)	1270
Eco24I	GRGCYC	2 cut(s)	84, 537
Eco47I	GGWCC	4 cut(s)	6, 404, 497, 595
Eco57I	CTGAAG	2 cut(s)	121, 1250
Eco81I	CCTNAGG	1 cut(s)	591
EcoO109I	RGGNCCY	4 cut(s)	6, 404, 497, 534
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	849, 1027
EcoT38I	GRGCYC	2 cut(s)	84, 537
FaeI	CATG	4 cut(s)	287, 296, 560, 703
FalI	AAGNNNNNCTT	2 cut(s)	484, 516
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	4 cut(s)	283, 292, 556, 699
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	4 cut(s)	580, 669, 1038, 1074
FokI	GGATG	2 cut(s)	707, 725
FriOI	GRGCYC	2 cut(s)	84, 537
Fsp4HI	GCNGC	4 cut(s)	580, 669, 1038, 1074
FspBI	CTAG	3 cut(s)	107, 263, 602
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	4 cut(s)	580, 669, 1038, 1074
HaeIII	GGCC	2 cut(s)	279, 535
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	287, 296, 560, 703
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	1263
HindII	GTYRAC	1 cut(s)	1263
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	2 cut(s)	738, 762
HphI	GGTGA	2 cut(s)	30, 1135
Hpy166II	GTNNAC	3 cut(s)	14, 869, 1263
Hpy188I	TCNGA	5 cut(s)	140, 526, 724, 1221, 1230
Hpy188III	TCNNGA	5 cut(s)	98, 284, 663, 889, 1198
Hpy8I	GTNNAC	3 cut(s)	14, 869, 1263
HpyAV	CCTTC	5 cut(s)	54, 145, 427, 510, 722
HpyCH4III	ACNGT	4 cut(s)	238, 795, 910, 949
HpyCH4IV	ACGT	2 cut(s)	386, 1130
HpyCH4V	TGCA	8 cut(s)	353, 382, 439, 632, 905, 969, 1148, 1211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	681
HpyF3I	CTNAG	9 cut(s)	54, 76, 83, 575, 591, 721, 814, 961, 1218
HpySE526I	ACGT	2 cut(s)	386, 1130
Hsp92II	CATG	4 cut(s)	287, 296, 560, 703
HspAI	GCGC	1 cut(s)	58
KflI	GGGWCCC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	72, 371, 810
LmnI	GCTCC	2 cut(s)	472, 1249
Lsp1109I	GCAGC	3 cut(s)	591, 680, 1024
LweI	GCATC	6 cut(s)	103, 362, 426, 703, 1060, 1157
MaeI	CTAG	3 cut(s)	107, 263, 602
MaeII	ACGT	2 cut(s)	386, 1130
MaeIII	GTNAC	3 cut(s)	36, 246, 265
MalI	GATC	3 cut(s)	74, 373, 812
MboI	GATC	3 cut(s)	72, 371, 810
MboII	GAAGA	8 cut(s)	18, 21, 24, 251, 716, 943, 1092, 1243
MfeI	CAATTG	2 cut(s)	360, 633
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	3 cut(s)	84, 469, 537
MlyI	GAGTC	1 cut(s)	771
MroXI	GAANNNNTTC	2 cut(s)	152, 896
MseI	TTAA	5 cut(s)	428, 458, 798, 930, 984
MspR9I	CCNGG	2 cut(s)	851, 1029
MunI	CAATTG	2 cut(s)	360, 633
Mva1269I	GAATGC	1 cut(s)	1213
MvaI	CCWGG	2 cut(s)	851, 1029
MwoI	GCNNNNNNNGC	1 cut(s)	681
NdeII	GATC	3 cut(s)	72, 371, 810
NlaIII	CATG	4 cut(s)	287, 296, 560, 703
NlaIV	GGNNCC	7 cut(s)	7, 8, 405, 535, 536, 570, 831
NmuCI	GTSAC	3 cut(s)	36, 246, 265
NspI	RCATGY	1 cut(s)	296
PagI	TCATGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	1213
PdmI	GAANNNNTTC	2 cut(s)	152, 896
PfeI	GAWTC	1 cut(s)	738
PkrI	GCNGC	4 cut(s)	581, 670, 1039, 1075
PleI	GAGTC	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	770
PpuMI	RGGWCCY	3 cut(s)	6, 404, 497
Psp5II	RGGWCCY	3 cut(s)	6, 404, 497
Psp6I	CCWGG	2 cut(s)	849, 1027
PspGI	CCWGG	2 cut(s)	849, 1027
PspN4I	GGNNCC	7 cut(s)	7, 8, 405, 535, 536, 570, 831
PspOMI	GGGCCC	1 cut(s)	533
PspPI	GGNCC	7 cut(s)	6, 278, 404, 497, 533, 534, 595
PspPPI	RGGWCCY	3 cut(s)	6, 404, 497
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SaqAI	TTAA	5 cut(s)	428, 458, 798, 930, 984
SatI	GCNGC	4 cut(s)	580, 669, 1038, 1074
Sau3AI	GATC	3 cut(s)	72, 371, 810
Sau96I	GGNCC	7 cut(s)	6, 278, 404, 497, 533, 534, 595
ScaI	AGTACT	1 cut(s)	235
SchI	GAGTC	1 cut(s)	771
ScrFI	CCNGG	2 cut(s)	851, 1029
SduI	GDGCHC	3 cut(s)	84, 469, 537
SfaNI	GCATC	6 cut(s)	103, 362, 426, 703, 1060, 1157
SfcI	CTRYAG	2 cut(s)	165, 941
SinI	GGWCC	4 cut(s)	6, 404, 497, 595
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
SsiI	CCGC	2 cut(s)	565, 1073
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	3 cut(s)	107, 263, 602
StyD4I	CCNGG	2 cut(s)	849, 1027
TaaI	ACNGT	4 cut(s)	238, 795, 910, 949
TaiI	ACGT	2 cut(s)	389, 1133
TaqI	TCGA	2 cut(s)	71, 448
TatI	WGTACW	1 cut(s)	233
TauI	GCSGC	1 cut(s)	1076
TfiI	GAWTC	1 cut(s)	738
Tru1I	TTAA	5 cut(s)	428, 458, 798, 930, 984
Tru9I	TTAA	5 cut(s)	428, 458, 798, 930, 984
TscAI	CASTG	3 cut(s)	91, 446, 915
TseFI	GTSAC	3 cut(s)	36, 246, 265
TseI	GCWGC	3 cut(s)	579, 668, 1037
Tsp45I	GTSAC	3 cut(s)	36, 246, 265
TspDTI	ATGAA	5 cut(s)	145, 730, 741, 943, 1014
TspGWI	ACGGA	2 cut(s)	77, 537
TspRI	CASTG	3 cut(s)	91, 446, 915
VpaK11BI	GGWCC	4 cut(s)	6, 404, 497, 595
XapI	RAATTY	5 cut(s)	22, 66, 255, 527, 893
XceI	RCATGY	1 cut(s)	296
XmnI	GAANNNNTTC	2 cut(s)	152, 896
XspI	CTAG	3 cut(s)	107, 263, 602
ZrmI	AGTACT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.