Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Reverse (-)

16320131 .. 16324518

Gene Structure 4388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1190900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGGGTCCCCTAGGCGAGAAAATGCTTCTTCTTCTTCATCTTCTTCTTCTTCATCCTCTCAACTCACAGACGCTTCGATCTCAGGGATCCATGAGAAGCATCAAGAGGAACTAGATAACTTGACACTAACATCACAACCCTTCAGAACGTTGAAGTTTTTCATATTGGCTGTAATTCAGTATGTTAAGCGTTTAGTATCATATTTGTTGGCAAGAGGTGGTTGGCTTGTGCTTTCGAGTATTGTGCTATTGTCTCTTGGAGTTCTTCTAATTACTTTTGATGGTCCTCATGAAAAGCATCTTGAGGAACTTGCCAAATATTTCCAGTTTGGTTTATGGTGGGTGGCCCTTGGAATTGCATCTTCGATTGGTCTTGGATCTGGTTTGCACACGTTTGTCCTATATCTGGGCCCCCATATTGCGTTCTTTACATTAAAGGCTATGCAGTGTGGTCGGGTTGATCTAAAAAGTGCCCCCTACGATACAATACAGCTAAAACAAGGCCCTTCGTGGCTTGGGAAGAGCTGCTCTGACTTTGGACCACCCTTGTTTCCATCATTACATGGTTTGCGGGTTCCACTTAGCAGCATATTACCACAGGTCCAGTTAGAGGCTGTTTTATGGGGTCTTGGGACTGCAATTGGAGAGCTTCCTCCATATTTTATCTCAAGAGCAGCAAGCGTGTCTGGTAACAAAGTTGCTATGGAAGAATTGGATGATCCCTCAGATGAAGGAACAGGATTCATAGCTACTCGTCTAAACCCAATCAAGCACTGGCTTCTATCACACTCTCAGCAGTTGAACTTCTTTACGATCCTAGTACTTGCTTCGGTGCCAAATCCTCTTTTTGACCTGGCTGGCATTATGTGTGGACAATTTGGTATTCCATTTTGGAAGTTTTTCCTTGCAACAGTGATTGGAAAGGCAATTATTAAAACTCATCTACAGACAGTTTTCATCATCTCAGTTTGCAACAATCAACTTCTTAATTGGATAGAGAATGAATTGATTTGGGTTTTCAGTCTCATTCCCGGTTTTGCTGCTGTCCTTCCTAACCTCATTGCGAAAATTGATGCGGCAAAGGAAAAGTATCTCACAGCTTCTCCTTCGTCAAATATCAAGGTGAATACGTGGGACTTCTCATTTGCCTCAATTTGGAACTCTTTGGTGTGGCTTATGCTGTTGAATTTCTTTGTCAAGATTGTTAATGCAACCGCTCAGAGGTATCTGAAGAAACAGCAGGTAATGGAGGTTGCTTTGTTGTCAAAGAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006887 GO:0006996 GO:0007029 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031984 GO:0032940 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0071840 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

426

Amino Acids

46.99

Weight (kDa)

8.9

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VTT_dom	PF09335	260 - 310	4.1e-06	VTT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1231
AccB1I	GGYRCC	1 cut(s)	832
AccBSI	CCGCTC	1 cut(s)	1217
AciI	CCGC	3 cut(s)	571, 1076, 1215
AclI	AACGTT	1 cut(s)	149
AclWI	GGATC	5 cut(s)	82, 95, 385, 713, 808
AcsI	RAATTY	1 cut(s)	1186
AcuI	CTGAAG	2 cut(s)	127, 1250
AfaI	GTAC	1 cut(s)	822
AfiI	CCNNNNNNNGG	4 cut(s)	406, 610, 1155, 1221
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	154, 802, 1186
AjnI	CCWGG	1 cut(s)	852
AluBI	AGCT	5 cut(s)	493, 525, 649, 749, 1100
AluI	AGCT	5 cut(s)	493, 525, 649, 749, 1100
Alw26I	GTCTC	2 cut(s)	258, 1028
AlwI	GGATC	5 cut(s)	82, 95, 385, 713, 808
AoxI	GGCC	3 cut(s)	345, 409, 502
ApaI	GGGCCC	1 cut(s)	413
ApeKI	GCWGC	4 cut(s)	525, 585, 674, 1040
ApoI	RAATTY	1 cut(s)	1186
ArsI	GACNNNNNNTTYG	2 cut(s)	1127, 1159
Asp700I	GAANNNNTTC	2 cut(s)	158, 899
AspA2I	CCTAGG	1 cut(s)	11
AspS9I	GGNCC	8 cut(s)	6, 284, 346, 409, 410, 503, 539, 601
AsuC2I	CCSGG	1 cut(s)	1032
AsuHPI	GGTGA	1 cut(s)	1135
AvaII	GGWCC	4 cut(s)	6, 284, 539, 601
AvrII	CCTAGG	1 cut(s)	11
BaeGI	GKGCMC	2 cut(s)	413, 475
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	832
BanII	GRGCYC	1 cut(s)	413
BbvI	GCAGC	4 cut(s)	512, 597, 686, 1027
BccI	CCATC	2 cut(s)	275, 562
BcgI	CGANNNNNNTGC	4 cut(s)	226, 260, 434, 468
BciT130I	CCWGG	1 cut(s)	854
BcnI	CCSGG	1 cut(s)	1032
BcoDI	GTCTC	2 cut(s)	258, 1028
BfaI	CTAG	3 cut(s)	12, 113, 818
BfmI	CTRYAG	1 cut(s)	944
BfuAI	ACCTGC	1 cut(s)	1231
BisI	GCNGC	5 cut(s)	526, 586, 675, 1041, 1077
BlnI	CCTAGG	1 cut(s)	11
BlsI	GCNGC	5 cut(s)	527, 587, 676, 1042, 1078
BmcAI	AGTACT	1 cut(s)	822
Bme1390I	CCNGG	2 cut(s)	854, 1032
Bme18I	GGWCC	4 cut(s)	6, 284, 539, 601
BmgT120I	GGNCC	8 cut(s)	6, 284, 346, 409, 410, 503, 539, 601
BmiI	GGNNCC	7 cut(s)	7, 8, 89, 411, 412, 576, 834
BmrFI	CCNGG	2 cut(s)	854, 1032
BmsI	GCATC	4 cut(s)	109, 307, 368, 1063
BpuEI	CTTGAG	2 cut(s)	323, 652
BpuMI	CCSGG	1 cut(s)	1032
BsaAI	YACGTR	1 cut(s)	1131
BsaJI	CCNNGG	2 cut(s)	11, 349
BsaXI	ACNNNNNCTCC	2 cut(s)	1087, 1117
Bsc4I	CCNNNNNNNGG	4 cut(s)	406, 610, 1155, 1221
Bse1I	ACTGG	3 cut(s)	325, 604, 779
Bse3DI	GCAATG	1 cut(s)	1059
BseBI	CCWGG	1 cut(s)	854
BseDI	CCNNGG	2 cut(s)	11, 349
BseGI	GGATG	2 cut(s)	53, 721
BseLI	CCNNNNNNNGG	4 cut(s)	406, 610, 1155, 1221
BseMI	GCAATG	1 cut(s)	1059
BseMII	CTCAG	5 cut(s)	96, 738, 806, 978, 1232
BseNI	ACTGG	3 cut(s)	325, 604, 779
BseSI	GKGCMC	2 cut(s)	413, 475
BseXI	GCAGC	4 cut(s)	512, 597, 686, 1027
BshFI	GGCC	3 cut(s)	347, 411, 504
BshNI	GGYRCC	1 cut(s)	832
BsiSI	CCGG	1 cut(s)	1032
BslFI	GGGAC	2 cut(s)	646, 1148
BslI	CCNNNNNNNGG	4 cut(s)	406, 610, 1155, 1221
BsmAI	GTCTC	2 cut(s)	258, 1028
BsmFI	GGGAC	2 cut(s)	646, 1148
BsnI	GGCC	3 cut(s)	347, 411, 504
Bsp120I	GGGCCC	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	413, 475
Bsp143I	GATC	6 cut(s)	78, 87, 377, 460, 718, 813
BspACI	CCGC	3 cut(s)	571, 1076, 1215
BspANI	GGCC	3 cut(s)	347, 411, 504
BspCNI	CTCAG	5 cut(s)	95, 737, 805, 977, 1231
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	7 cut(s)	7, 8, 89, 411, 412, 576, 834
BspMI	ACCTGC	1 cut(s)	1231
BspPI	GGATC	5 cut(s)	82, 95, 385, 713, 808
BspQI	GCTCTTC	1 cut(s)	515
BspT107I	GGYRCC	1 cut(s)	832
BsrBI	CCGCTC	1 cut(s)	1217
BsrDI	GCAATG	1 cut(s)	1059
BsrI	ACTGG	3 cut(s)	325, 604, 779
BssECI	CCNNGG	2 cut(s)	11, 349
BssMI	GATC	6 cut(s)	78, 87, 377, 460, 718, 813
BssT1I	CCWWGG	2 cut(s)	11, 349
Bst2UI	CCWGG	1 cut(s)	854
Bst4CI	ACNGT	2 cut(s)	913, 952
Bst6I	CTCTTC	1 cut(s)	515
BstBAI	YACGTR	1 cut(s)	1131
BstC8I	GCNNGC	2 cut(s)	679, 859
BstDEI	CTNAG	6 cut(s)	82, 581, 724, 792, 964, 1218
BstF5I	GGATG	2 cut(s)	53, 721
BstKTI	GATC	6 cut(s)	81, 90, 380, 463, 721, 816
BstMAI	GTCTC	2 cut(s)	258, 1028
BstMBI	GATC	6 cut(s)	78, 87, 377, 460, 718, 813
BstNI	CCWGG	1 cut(s)	854
BstSCI	CCNGG	2 cut(s)	852, 1030
BstSFI	CTRYAG	1 cut(s)	944
BstSLI	GKGCMC	2 cut(s)	413, 475
BstV1I	GCAGC	4 cut(s)	512, 597, 686, 1027
BstX2I	RGATCY	2 cut(s)	87, 377
BstYI	RGATCY	2 cut(s)	87, 377
BsuRI	GGCC	3 cut(s)	347, 411, 504
BtsCI	GGATG	2 cut(s)	53, 721
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	3 cut(s)	452, 772, 918
BveI	ACCTGC	1 cut(s)	1231
Cac8I	GCNNGC	2 cut(s)	679, 859
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	8 cut(s)	6, 284, 346, 409, 410, 503, 539, 601
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	821
CviAII	CATG	3 cut(s)	92, 290, 563
CviQI	GTAC	1 cut(s)	821
DdeI	CTNAG	6 cut(s)	82, 581, 724, 792, 964, 1218
DpnI	GATC	6 cut(s)	80, 89, 379, 462, 720, 815
DpnII	GATC	6 cut(s)	78, 87, 377, 460, 718, 813
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Eco130I	CCWWGG	2 cut(s)	11, 349
Eco24I	GRGCYC	1 cut(s)	413
Eco47I	GGWCC	4 cut(s)	6, 284, 539, 601
Eco57I	CTGAAG	2 cut(s)	127, 1250
EcoO109I	RGGNCCY	3 cut(s)	6, 410, 503
EcoRII	CCWGG	1 cut(s)	852
EcoT14I	CCWWGG	2 cut(s)	11, 349
EcoT38I	GRGCYC	1 cut(s)	413
ErhI	CCWWGG	2 cut(s)	11, 349
FaeI	CATG	3 cut(s)	95, 293, 566
FaqI	GGGAC	2 cut(s)	646, 1148
FatI	CATG	3 cut(s)	91, 289, 562
FauI	CCCGC	1 cut(s)	564
Fnu4HI	GCNGC	5 cut(s)	526, 586, 675, 1041, 1077
FokI	GGATG	2 cut(s)	40, 728
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	5 cut(s)	526, 586, 675, 1041, 1077
FspBI	CTAG	3 cut(s)	12, 113, 818
GluI	GCNGC	5 cut(s)	526, 586, 675, 1041, 1077
HaeIII	GGCC	3 cut(s)	347, 411, 504
HapII	CCGG	1 cut(s)	1032
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	95, 293, 566
HinfI	GANTC	1 cut(s)	741
HpaII	CCGG	1 cut(s)	1032
HphI	GGTGA	1 cut(s)	1135
Hpy166II	GTNNAC	1 cut(s)	872
Hpy188I	TCNGA	5 cut(s)	146, 532, 727, 1221, 1230
Hpy188III	TCNNGA	5 cut(s)	104, 290, 302, 669, 1198
Hpy8I	GTNNAC	1 cut(s)	872
HpyAV	CCTTC	5 cut(s)	151, 516, 725, 1058, 1116
HpyCH4III	ACNGT	2 cut(s)	913, 952
HpyCH4IV	ACGT	3 cut(s)	149, 392, 1130
HpyCH4V	TGCA	7 cut(s)	359, 388, 445, 638, 908, 972, 1211
HpyF3I	CTNAG	6 cut(s)	82, 581, 724, 792, 964, 1218
HpySE526I	ACGT	3 cut(s)	149, 392, 1130
Hsp92II	CATG	3 cut(s)	95, 293, 566
KflI	GGGWCCC	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	78, 87, 377, 460, 718, 813
LguI	GCTCTTC	1 cut(s)	515
Lsp1109I	GCAGC	4 cut(s)	512, 597, 686, 1027
LweI	GCATC	4 cut(s)	109, 307, 368, 1063
MaeI	CTAG	3 cut(s)	12, 113, 818
MaeII	ACGT	3 cut(s)	149, 392, 1130
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	6 cut(s)	80, 89, 379, 462, 720, 815
MbiI	CCGCTC	1 cut(s)	1217
MboI	GATC	6 cut(s)	78, 87, 377, 460, 718, 813
MfeI	CAATTG	1 cut(s)	639
MflI	RGATCY	2 cut(s)	87, 377
MhlI	GDGCHC	2 cut(s)	413, 475
MroXI	GAANNNNTTC	2 cut(s)	158, 899
MseI	TTAA	5 cut(s)	186, 434, 933, 987, 1206
MspI	CCGG	1 cut(s)	1032
MspR9I	CCNGG	2 cut(s)	854, 1032
MunI	CAATTG	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	854
NciI	CCSGG	1 cut(s)	1032
NdeII	GATC	6 cut(s)	78, 87, 377, 460, 718, 813
NlaIII	CATG	3 cut(s)	95, 293, 566
NlaIV	GGNNCC	7 cut(s)	7, 8, 89, 411, 412, 576, 834
PagI	TCATGA	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	515
PdmI	GAANNNNTTC	2 cut(s)	158, 899
PfeI	GAWTC	1 cut(s)	741
PkrI	GCNGC	5 cut(s)	527, 587, 676, 1042, 1078
Ppu21I	YACGTR	1 cut(s)	1131
PpuMI	RGGWCCY	1 cut(s)	6
Psp1406I	AACGTT	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	852
PspN4I	GGNNCC	7 cut(s)	7, 8, 89, 411, 412, 576, 834
PspOMI	GGGCCC	1 cut(s)	409
PspPI	GGNCC	8 cut(s)	6, 284, 346, 409, 410, 503, 539, 601
PspPPI	RGGWCCY	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	87, 377
RsaI	GTAC	1 cut(s)	822
RsaNI	GTAC	1 cut(s)	821
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	5 cut(s)	186, 434, 933, 987, 1206
SatI	GCNGC	5 cut(s)	526, 586, 675, 1041, 1077
Sau3AI	GATC	6 cut(s)	78, 87, 377, 460, 718, 813
Sau96I	GGNCC	8 cut(s)	6, 284, 346, 409, 410, 503, 539, 601
ScaI	AGTACT	1 cut(s)	822
ScrFI	CCNGG	2 cut(s)	854, 1032
SduI	GDGCHC	2 cut(s)	413, 475
SfaNI	GCATC	4 cut(s)	109, 307, 368, 1063
SfcI	CTRYAG	1 cut(s)	944
SinI	GGWCC	4 cut(s)	6, 284, 539, 601
SmlI	CTYRAG	2 cut(s)	302, 667
SmoI	CTYRAG	2 cut(s)	302, 667
SsiI	CCGC	3 cut(s)	571, 1076, 1215
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	3 cut(s)	12, 113, 818
StyD4I	CCNGG	2 cut(s)	852, 1030
StyI	CCWWGG	2 cut(s)	11, 349
TaaI	ACNGT	2 cut(s)	913, 952
TaiI	ACGT	3 cut(s)	152, 395, 1133
TaqI	TCGA	3 cut(s)	77, 236, 365
TatI	WGTACW	1 cut(s)	820
TauI	GCSGC	1 cut(s)	1079
TfiI	GAWTC	1 cut(s)	741
Tru1I	TTAA	5 cut(s)	186, 434, 933, 987, 1206
Tru9I	TTAA	5 cut(s)	186, 434, 933, 987, 1206
TscAI	CASTG	3 cut(s)	452, 779, 918
TseI	GCWGC	4 cut(s)	525, 585, 674, 1040
TspDTI	ATGAA	8 cut(s)	27, 42, 151, 306, 733, 744, 946, 1017
TspRI	CASTG	3 cut(s)	452, 779, 918
VpaK11BI	GGWCC	4 cut(s)	6, 284, 539, 601
XapI	RAATTY	1 cut(s)	1186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XmaJI	CCTAGG	1 cut(s)	11
XmnI	GAANNNNTTC	2 cut(s)	158, 899
XspI	CTAG	3 cut(s)	12, 113, 818
ZrmI	AGTACT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.