Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Forward (+)

45772073 .. 45775853

Gene Structure 3781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGATCTCCCCGATTCGCCTTCAAATCCCATGGATTCGCCCGTCTCCGGACTGCGTGTGAGGCATCACCGGGAACTCGAAAATTTAACACTTACGACGAGGCCGGTAAAGACATTAAAGTATTTCACTGTGGGAATTGGTCGGTATTTTCGGCAATTTATGGCAACTGGTGGTTCGTTTGTGCTGTTTATTTTGCTAGCAGGAGGTCTGGGAATTACTACTATGACAATTGGCGGACCACATGAAAAGCACATGCATGAGCTTATCCGTTATCTCCAATTTGGACTCTGGTGGCTGGCTCTTGGTGTAGCATCGTCAATTGGTCTTGGATCTGGTTTGCACACATTTGTACTGTATTTGGGCCCTCATATAGCTCTGTTTACCATGAAAGCCGTGCAGTGTGGCAGAGTTGACTTAAAAATTGCCCCTTATGATACCGTTCAATTGAAAACGGGTCCTTCATGGATGGATAGAAACTGCTCTGAATATGGTCCCCCACTATTTTCATCGCAGCAAGGTTCAAGGCTCCCACTTAGCAGCATACTGCCTCAGGTTCAGTTAGAGGCTATTCTGTGGGGAATTGGAACTGCACTGGGAGAGCTTCCTCCATTTTTCATATCGAGAGCTGCTCGAATAGCAGGGAGTGAATTGGAAGTAATGAAAGAATTGGATTCTTCTTCAACTGAAGATGGTGGAGTTGTAGCTAATCACGTGAACCGGATCAAACTATGGCTTCTTTCACATTCACAGTATCTGAACTTTTTAACGATATTAGTTCTTGCTTCGGTACCCAACCCTCTATTTGACCTTGCTGGTATAATGTGTGGACAATTTGGCATTCCATTTTGGACATTCTTTATCTCAACAATGATTGGAAAGGCATTTATCAAGACTCACATACAGACTATTTTCCTCATCTCAGTTTGCAACAATCAACTTCTTGACTTGGTAGAAAATAAATTGATTCGGTTGCTTAGCATTTTCCCTGGATTTGGTTTGATTGCGCCCAAACTCATTGCCAAACTACATATTTTGAAAGAGAAGTATATGGATGGCTCTCCTCCAGTTATCTCAAACAGCGAGGTGAAAAAGTGGAACTTCTCTATTGGTTCAATTTGGAATACTGTTGTGTGGCTCATGCTCATCAACTTTTTCATCAAGATTGTGTCAGCAACTGCACAAACTGTTCTCAAGGAAGAACATGAAAAGGAGTTGAATGCATTGACGAACAATGTACAGGCATCAGATCTCGGCAAGGTTGTGTCAACAACTGCACAAAACGATCTCAAAGAAGAACAGAAAGAGGAGTTGACTGCAAAGCAACTGGCTGACGAACAATTTACAGGCACCAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

452

Amino Acids

50.1

Weight (kDa)

7.73

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	787
AccB1I	GGYRCC	2 cut(s)	787, 1346
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	3 cut(s)	12, 337, 728
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	705
AcvI	CACGTG	1 cut(s)	712
AfaI	GTAC	3 cut(s)	351, 789, 1236
AfiI	CCNNNNNNNGG	2 cut(s)	47, 992
AgsI	TTSAA	8 cut(s)	24, 443, 448, 522, 681, 1036, 1113, 1216
AjnI	CCWGG	1 cut(s)	985
AluBI	AGCT	5 cut(s)	262, 374, 601, 626, 704
AluI	AGCT	5 cut(s)	262, 374, 601, 626, 704
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	3 cut(s)	12, 337, 728
AlwNI	CAGNNNCTG	3 cut(s)	754, 1175, 1356
Aor13HI	TCCGGA	1 cut(s)	47
AoxI	GGCC	2 cut(s)	101, 361
ApaI	GGGCCC	1 cut(s)	365
ApeKI	GCWGC	3 cut(s)	511, 537, 626
ApoI	RAATTY	1 cut(s)	82
Asp718I	GGTACC	1 cut(s)	787
AspLEI	GCGC	1 cut(s)	1006
AspS9I	GGNCC	5 cut(s)	236, 361, 362, 455, 491
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	59, 1096
AsuNHI	GCTAGC	1 cut(s)	196
AvaII	GGWCC	3 cut(s)	236, 455, 491
AxyI	CCTNAGG	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	365
BanI	GGYRCC	2 cut(s)	787, 1346
BanII	GRGCYC	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	712
BbvI	GCAGC	3 cut(s)	523, 549, 613
BccI	CCATC	3 cut(s)	460, 683, 1046
BceAI	ACGGC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	987
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	1246
BisI	GCNGC	3 cut(s)	512, 538, 627
BlpI	GCTNAGC	1 cut(s)	974
BlsI	GCNGC	3 cut(s)	513, 539, 628
Bme1390I	CCNGG	2 cut(s)	71, 987
Bme18I	GGWCC	3 cut(s)	236, 455, 491
BmgT120I	GGNCC	5 cut(s)	236, 361, 362, 455, 491
BmiI	GGNNCC	6 cut(s)	363, 456, 493, 527, 789, 1348
BmrFI	CCNGG	2 cut(s)	71, 987
BmrI	ACTGGG	1 cut(s)	602
BmsI	GCATC	3 cut(s)	73, 320, 1250
BmtI	GCTAGC	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	602
BplI	GAGNNNNNCTC	2 cut(s)	613, 645
BpmI	CTGGAG	1 cut(s)	1047
Bpu1102I	GCTNAGC	1 cut(s)	974
BpuEI	CTTGAG	1 cut(s)	1175
BpuMI	CCSGG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	712
BsaJI	CCNNGG	2 cut(s)	30, 985
BsaWI	WCCGGW	2 cut(s)	47, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 992
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	4 cut(s)	172, 597, 1064, 1329
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	1014
BseAI	TCCGGA	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	2 cut(s)	30, 985
BseGI	GGATG	2 cut(s)	471, 1057
BseLI	CCNNNNNNNGG	2 cut(s)	47, 992
BseMI	GCAATG	1 cut(s)	1014
BseMII	CTCAG	2 cut(s)	563, 933
BseNI	ACTGG	4 cut(s)	172, 597, 1064, 1329
BseRI	GAGGAG	2 cut(s)	1050, 1319
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	523, 549, 613
BsgI	GTGCAG	4 cut(s)	416, 573, 1161, 1257
BshFI	GGCC	2 cut(s)	103, 363
BshNI	GGYRCC	2 cut(s)	787, 1346
BsiSI	CCGG	4 cut(s)	48, 70, 104, 718
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	2 cut(s)	47, 992
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	477
BsmI	GAATGC	2 cut(s)	837, 1222
BsnI	GGCC	2 cut(s)	103, 363
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp13I	TCCGGA	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	1234
Bsp143I	GATC	5 cut(s)	4, 329, 720, 1246, 1282
Bsp1720I	GCTNAGC	1 cut(s)	974
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	2 cut(s)	103, 363
BspCNI	CTCAG	2 cut(s)	562, 932
BspEI	TCCGGA	1 cut(s)	47
BspLI	GGNNCC	6 cut(s)	363, 456, 493, 527, 789, 1348
BspOI	GCTAGC	1 cut(s)	200
BspPI	GGATC	3 cut(s)	12, 337, 728
BspT107I	GGYRCC	2 cut(s)	787, 1346
BsrDI	GCAATG	1 cut(s)	1014
BsrFI	RCCGGY	1 cut(s)	103
BsrGI	TGTACA	1 cut(s)	1234
BsrI	ACTGG	4 cut(s)	172, 597, 1064, 1329
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	30, 985
BssMI	GATC	5 cut(s)	4, 329, 720, 1246, 1282
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	6 cut(s)	130, 354, 439, 750, 1126, 1186
BstAUI	TGTACA	1 cut(s)	1234
BstBAI	YACGTR	1 cut(s)	712
BstC8I	GCNNGC	2 cut(s)	198, 297
BstDEI	CTNAG	4 cut(s)	533, 549, 919, 974
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	471, 1057
BstHHI	GCGC	1 cut(s)	1006
BstKTI	GATC	5 cut(s)	7, 332, 723, 1249, 1285
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	5 cut(s)	4, 329, 720, 1246, 1282
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 635
BstNI	CCWGG	1 cut(s)	987
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	69, 985
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	3 cut(s)	523, 549, 613
BstX2I	RGATCY	3 cut(s)	4, 329, 1246
BstYI	RGATCY	3 cut(s)	4, 329, 1246
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	103, 363
BtgI	CCRYGG	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	471, 1057
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	3 cut(s)	126, 404, 590
Cac8I	GCNNGC	2 cut(s)	198, 297
CaiI	CAGNNNCTG	3 cut(s)	754, 1175, 1356
CfoI	GCGC	1 cut(s)	1006
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	5 cut(s)	236, 361, 362, 455, 491
Csp6I	GTAC	3 cut(s)	350, 788, 1235
CviAII	CATG	8 cut(s)	31, 242, 253, 257, 385, 462, 1138, 1202
CviQI	GTAC	3 cut(s)	350, 788, 1235
DdeI	CTNAG	4 cut(s)	533, 549, 919, 974
DpnI	GATC	5 cut(s)	6, 331, 722, 1248, 1284
DpnII	GATC	5 cut(s)	4, 329, 720, 1246, 1282
EciI	GGCGGA	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	365
Eco47I	GGWCC	3 cut(s)	236, 455, 491
Eco57I	CTGAAG	1 cut(s)	705
Eco72I	CACGTG	1 cut(s)	712
Eco81I	CCTNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	2 cut(s)	362, 455
EcoRII	CCWGG	1 cut(s)	985
EcoT14I	CCWWGG	1 cut(s)	30
EcoT22I	ATGCAT	2 cut(s)	258, 1222
EcoT38I	GRGCYC	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	8 cut(s)	34, 245, 256, 260, 388, 465, 1141, 1205
FalI	AAGNNNNNCTT	2 cut(s)	1082, 1114
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	8 cut(s)	30, 241, 252, 256, 384, 461, 1137, 1201
Fnu4HI	GCNGC	3 cut(s)	512, 538, 627
FokI	GGATG	2 cut(s)	478, 1064
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	512, 538, 627
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	1005
GluI	GCNGC	3 cut(s)	512, 538, 627
GsuI	CTGGAG	1 cut(s)	1047
HaeIII	GGCC	2 cut(s)	103, 363
HapII	CCGG	4 cut(s)	48, 70, 104, 718
HhaI	GCGC	1 cut(s)	1006
Hin1II	CATG	8 cut(s)	34, 245, 256, 260, 388, 465, 1141, 1205
Hin6I	GCGC	1 cut(s)	1004
HinP1I	GCGC	1 cut(s)	1004
HincII	GTYRAC	3 cut(s)	412, 1266, 1311
HindII	GTYRAC	3 cut(s)	412, 1266, 1311
HinfI	GANTC	6 cut(s)	14, 35, 285, 671, 892, 964
HpaII	CCGG	4 cut(s)	48, 70, 104, 718
HphI	GGTGA	2 cut(s)	59, 1096
Hpy166II	GTNNAC	6 cut(s)	381, 412, 715, 827, 1266, 1311
Hpy188I	TCNGA	3 cut(s)	484, 756, 1246
Hpy188III	TCNNGA	5 cut(s)	48, 621, 889, 941, 1159
Hpy8I	GTNNAC	6 cut(s)	381, 412, 715, 827, 1266, 1311
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	30, 468
HpyCH4III	ACNGT	6 cut(s)	130, 354, 439, 750, 1126, 1186
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	9 cut(s)	256, 340, 397, 590, 927, 1178, 1220, 1274, 1316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 635
HpyF3I	CTNAG	4 cut(s)	533, 549, 919, 974
HpySE526I	ACGT	1 cut(s)	711
Hsp92II	CATG	8 cut(s)	34, 245, 256, 260, 388, 465, 1141, 1205
HspAI	GCGC	1 cut(s)	1004
Kpn2I	TCCGGA	1 cut(s)	47
KpnI	GGTACC	1 cut(s)	791
Kzo9I	GATC	5 cut(s)	4, 329, 720, 1246, 1282
LmnI	GCTCC	1 cut(s)	531
Lsp1109I	GCAGC	3 cut(s)	523, 549, 613
LweI	GCATC	3 cut(s)	73, 320, 1250
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	711
MalI	GATC	5 cut(s)	6, 331, 722, 1248, 1284
MboI	GATC	5 cut(s)	4, 329, 720, 1246, 1282
MboII	GAAGA	5 cut(s)	666, 669, 698, 1208, 1304
MfeI	CAATTG	3 cut(s)	228, 318, 443
MflI	RGATCY	3 cut(s)	4, 329, 1246
MhlI	GDGCHC	1 cut(s)	365
MlyI	GAGTC	2 cut(s)	279, 886
Mph1103I	ATGCAT	2 cut(s)	258, 1222
MroI	TCCGGA	1 cut(s)	47
MseI	TTAA	4 cut(s)	86, 116, 416, 764
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	4 cut(s)	48, 70, 104, 718
MspR9I	CCNGG	2 cut(s)	71, 987
MunI	CAATTG	3 cut(s)	228, 318, 443
Mva1269I	GAATGC	2 cut(s)	837, 1222
MvaI	CCWGG	1 cut(s)	987
MwoI	GCNNNNNNNGC	2 cut(s)	61, 635
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	5 cut(s)	4, 329, 720, 1246, 1282
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	8 cut(s)	34, 245, 256, 260, 388, 465, 1141, 1205
NlaIV	GGNNCC	6 cut(s)	363, 456, 493, 527, 789, 1348
NmeAIII	GCCGAG	1 cut(s)	1230
NsiI	ATGCAT	2 cut(s)	258, 1222
NspI	RCATGY	1 cut(s)	256
PctI	GAATGC	2 cut(s)	837, 1222
PfeI	GAWTC	4 cut(s)	14, 35, 671, 964
PkrI	GCNGC	3 cut(s)	513, 539, 628
PleI	GAGTC	2 cut(s)	279, 886
PmaCI	CACGTG	1 cut(s)	712
PmlI	CACGTG	1 cut(s)	712
PpsI	GAGTC	2 cut(s)	279, 886
Ppu21I	YACGTR	1 cut(s)	712
PpuMI	RGGWCCY	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	985
PspCI	CACGTG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	985
PspN4I	GGNNCC	6 cut(s)	363, 456, 493, 527, 789, 1348
PspOMI	GGGCCC	1 cut(s)	361
PspPI	GGNCC	5 cut(s)	236, 361, 362, 455, 491
PspPPI	RGGWCCY	1 cut(s)	455
PstNI	CAGNNNCTG	3 cut(s)	754, 1175, 1356
PsuI	RGATCY	3 cut(s)	4, 329, 1246
RsaI	GTAC	3 cut(s)	351, 789, 1236
RsaNI	GTAC	3 cut(s)	350, 788, 1235
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	4 cut(s)	86, 116, 416, 764
SatI	GCNGC	3 cut(s)	512, 538, 627
Sau3AI	GATC	5 cut(s)	4, 329, 720, 1246, 1282
Sau96I	GGNCC	5 cut(s)	236, 361, 362, 455, 491
SchI	GAGTC	2 cut(s)	279, 886
ScrFI	CCNGG	2 cut(s)	71, 987
SduI	GDGCHC	1 cut(s)	365
SfaNI	GCATC	3 cut(s)	73, 320, 1250
SinI	GGWCC	3 cut(s)	236, 455, 491
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	1190
SmoI	CTYRAG	1 cut(s)	1190
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	69, 985
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	6 cut(s)	130, 354, 439, 750, 1126, 1186
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	3 cut(s)	78, 620, 631
TatI	WGTACW	2 cut(s)	349, 1234
TfiI	GAWTC	4 cut(s)	14, 35, 671, 964
Tru1I	TTAA	4 cut(s)	86, 116, 416, 764
Tru9I	TTAA	4 cut(s)	86, 116, 416, 764
TscAI	CASTG	3 cut(s)	133, 404, 597
TseI	GCWGC	3 cut(s)	511, 537, 626
TspDTI	ATGAA	8 cut(s)	258, 401, 450, 495, 604, 674, 1144, 1218
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	3 cut(s)	133, 404, 597
VpaK11BI	GGWCC	3 cut(s)	236, 455, 491
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	256
XspI	CTAG	1 cut(s)	197
Zsp2I	ATGCAT	2 cut(s)	258, 1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.