Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002021

Physical Location & Seq

Genomic Coordinates Forward (+)

21935918 .. 21939363

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGTCCCACCGACGCAGCCTCGTCGAATTCCACGGATTCCTCCGTCTCCGGACTCCGGTTGAAGCATCACCAGGAACTAGAAAATTTAACACTTACAACACAGCCGTTAAAGACATTAAAGTATTTCAATTTGGCTATTGGCCAATATGTTCGGCGTTTTATGGCGAGAGGTGGTTGGTTTCTGCTTCTAATTATGTTAGCAGGAGGTATAGGAGTGATCACTGCGACAGTTGGTGGACCTCAACAAGAGCATATCCAGGAGCTTATTCGTTATCTGCAATTTGGACTCTGGTGGCTGGCTCTTGGTGTAGCATCATCTATTGGTCTTGGATCTGGTTTGCACACGTTTGTGCTGTATTTGGGGCCTCATGTAGCTCTGTTTACCATGAAAGCCGTGCACTGTGGCAGAGTTGACATAAAAAGTGCTCCATATGACACCATTCAGTGGAGAAGTGGTCCTTCATGGCTGGATAGAGAATGCTCTGAATATGGGACACCCCTGTTGTTATCACAGCACGGTTCAAGGGTTCCGCTTAGCAGTATATTGCCTCAGGTTCAGTTAGAGGCTATTCTATGGGGAGTTGGAACTGCACTGGGGGAGCTTCCTCCTTATTTCATATCAAGAGCTGCTAGTATATCTGGTCAAAAATTGGAAGTCATGAAAGAATTGGATTCTTCATCAACTGAAGACAGTGGAATGGTAGCTAGTCGCCTCAACCTGATGAAATCATGGCTTCTTTCACATACACAATATCTGAACTTTTTAACTATATTAGTTCTTGCTTCGGTGCCCAACCCTCTATTTGACCTTGCTGGTATATTGTGTGGACAATTTGGCATTCGATTTTGGACGTTCTTTCTAGCAACATTGATTGGAAAGGCATTTATTAAGACTCACATACAGACAGTTTTCATCATCTCAGTTTGCAACAATCAGCTTCTCGACTTGGTAGAAAATAAATTGATTTGGTTGTTCAGCTTTTTCCCTGGATTTGGTTTGTTTGTGCCCGACCTCATCACCAAATTACGTACAATGAAAGACAAGTATACACACGCCTCACCTCCAGTCGCCTCTAACAGCGAGGAGAAGAAGTGGGACTTATCATTTAGTTCGATTTGGAACACTGTTGTGTGGCTCATGCTCATGAACTTTTTCATCAAGATTGTGACGGCAAGCGCACAAAGCGTTCTCAAGGAAGAACATGAAAAGGAGCTGACTGCGTTGTCGAACAATCTGCATACATCCAAACAAAAAAGTGGTGCTTGTTGCAGCCAAGCCTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

430

Amino Acids

47.56

Weight (kDa)

8.43

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05360 AT1G05360 AT4G14950 AT4G14950 AT4G14950
fragaria_vesca	FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_4g15240 FvH4_6g06030 FvH4_6g06030
malus_domestica	MD04G1204700.v1.1 MD12G1218400.v1.1 MD13G1190900.v1.1 MD16G1191100.v1.1
prunus_persica	Prupe.1G011300_v2.0.a1 Prupe.1G011300_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1 Prupe.6G324700_v2.0.a1
pyrus_communis	pycom04g18090 pycom12g20400 pycom16g16070
rosa_chinensis	RchiOBHm_Chr3g0454991 RchiOBHm_Chr4g0400671 RchiOBHm_Chr4g0416611
rosa_laevigata	RLG00000007967 RLG00000025395
rosa_multiflora	Rmu_sc0001861.1_g000059 Rmu_sc0003722.1_g000053 Rmu_sc0028514.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360490 Rroxscaffold_6G00424620
rosa_rugosa	Rorug03G0003800 Rorug04G0143300.1
rosa_samantha	Rh3AG063400 Rh3BG065100 Rh3CG064200 Rh3DG065400 Rh4AG205700 Rh4BG203200 Rh4CG216600 Rh4DG202700
rosa_wichuraiana	Rw3G004980 Rw4G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1225
AccB1I	GGYRCC	1 cut(s)	790
AccB7I	CCANNNNNTGG	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	1049
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	28, 85
AcuI	CTGAAG	1 cut(s)	708
AfaI	GTAC	1 cut(s)	1033
AfiI	CCNNNNNNNGG	3 cut(s)	57, 447, 995
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	64, 130, 525
AjnI	CCWGG	3 cut(s)	72, 258, 988
AleI	CACNNNNGTG	2 cut(s)	350, 1130
AluBI	AGCT	8 cut(s)	265, 377, 604, 629, 707, 940, 981, 1216
AluI	AGCT	8 cut(s)	265, 377, 604, 629, 707, 940, 981, 1216
Alw21I	GWGCWC	2 cut(s)	402, 430
Alw26I	GTCTC	1 cut(s)	52
Alw44I	GTGCAC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	340
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	2 cut(s)	142, 365
ApaLI	GTGCAC	1 cut(s)	398
ApeKI	GCWGC	3 cut(s)	17, 629, 1272
ApoI	RAATTY	2 cut(s)	28, 85
Asp700I	GAANNNNTTC	1 cut(s)	1154
AspLEI	GCGC	1 cut(s)	1181
AspS9I	GGNCC	4 cut(s)	5, 239, 365, 458
AsuHPI	GGTGA	3 cut(s)	62, 1012, 1053
AvaII	GGWCC	3 cut(s)	5, 239, 458
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	3 cut(s)	402, 795, 1011
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	790
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	2 cut(s)	402, 430
BbvI	GCAGC	3 cut(s)	29, 616, 1284
BceAI	ACGGC	3 cut(s)	91, 380, 1188
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 1219, 1253
BciT130I	CCWGG	3 cut(s)	74, 260, 990
BclI	TGATCA	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	4 cut(s)	80, 633, 708, 863
BisI	GCNGC	3 cut(s)	18, 630, 1273
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	3 cut(s)	19, 631, 1274
Bme1390I	CCNGG	3 cut(s)	74, 260, 990
Bme18I	GGWCC	3 cut(s)	5, 239, 458
BmgT120I	GGNCC	4 cut(s)	5, 239, 365, 458
BmiI	GGNNCC	5 cut(s)	6, 7, 366, 531, 792
BmrFI	CCNGG	3 cut(s)	74, 260, 990
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	2 cut(s)	76, 323
BmuI	ACTGGG	1 cut(s)	605
BpiI	GAAGAC	1 cut(s)	696
BpmI	CTGGAG	1 cut(s)	1050
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	1178
BsaAI	YACGTR	1 cut(s)	1031
BsaJI	CCNNGG	2 cut(s)	33, 988
BsaWI	WCCGGW	2 cut(s)	50, 57
BsaXI	ACNNNNNCTCC	4 cut(s)	442, 472, 1079, 1109
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 447, 995
Bse1I	ACTGG	2 cut(s)	600, 1067
Bse21I	CCTNAGG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	3 cut(s)	74, 260, 990
BseDI	CCNNGG	2 cut(s)	33, 988
BseGI	GGATG	1 cut(s)	1244
BseLI	CCNNNNNNNGG	3 cut(s)	57, 447, 995
BseMII	CTCAG	2 cut(s)	566, 936
BseNI	ACTGG	2 cut(s)	600, 1067
BseRI	GAGGAG	1 cut(s)	1100
BseSI	GKGCMC	3 cut(s)	402, 795, 1011
BseXI	GCAGC	3 cut(s)	29, 616, 1284
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	2 cut(s)	144, 367
BshNI	GGYRCC	1 cut(s)	790
BsiHKAI	GWGCWC	2 cut(s)	402, 430
BsiSI	CCGG	2 cut(s)	51, 58
BslFI	GGGAC	2 cut(s)	508, 1112
BslI	CCNNNNNNNGG	3 cut(s)	57, 447, 995
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	2 cut(s)	508, 1112
BsmI	GAATGC	2 cut(s)	485, 840
BsnI	GGCC	2 cut(s)	144, 367
Bsp1286I	GDGCHC	4 cut(s)	402, 430, 795, 1011
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	219, 332
Bsp1720I	GCTNAGC	1 cut(s)	536
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	2 cut(s)	144, 367
BspCNI	CTCAG	2 cut(s)	565, 935
BspEI	TCCGGA	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	660, 1146
BspLI	GGNNCC	5 cut(s)	6, 7, 366, 531, 792
BspPI	GGATC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	790
BsrI	ACTGG	2 cut(s)	600, 1067
BssECI	CCNNGG	2 cut(s)	33, 988
BssMI	GATC	2 cut(s)	219, 332
BssNAI	GTATAC	1 cut(s)	1050
Bst1107I	GTATAC	1 cut(s)	1050
Bst2UI	CCWGG	3 cut(s)	74, 260, 990
Bst4CI	ACNGT	6 cut(s)	232, 404, 521, 695, 910, 1129
BstBAI	YACGTR	1 cut(s)	1031
BstC8I	GCNNGC	2 cut(s)	300, 1177
BstDEI	CTNAG	3 cut(s)	536, 552, 922
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	1244
BstHHI	GCGC	1 cut(s)	1181
BstKTI	GATC	2 cut(s)	222, 335
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	219, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	1185
BstNI	CCWGG	3 cut(s)	74, 260, 990
BstSCI	CCNGG	3 cut(s)	72, 258, 988
BstSLI	GKGCMC	3 cut(s)	402, 795, 1011
BstSNI	TACGTA	1 cut(s)	1031
BstV1I	GCAGC	3 cut(s)	29, 616, 1284
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BstZ17I	GTATAC	1 cut(s)	1050
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	144, 367
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	1244
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	6 cut(s)	222, 400, 452, 593, 700, 1125
Cac8I	GCNNGC	2 cut(s)	300, 1177
CciI	TCATGA	2 cut(s)	660, 1146
CfoI	GCGC	1 cut(s)	1181
Cfr13I	GGNCC	4 cut(s)	5, 239, 365, 458
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	1032
CviAII	CATG	8 cut(s)	371, 388, 465, 661, 732, 1141, 1147, 1205
CviQI	GTAC	1 cut(s)	1032
DdeI	CTNAG	3 cut(s)	536, 552, 922
DpnI	GATC	2 cut(s)	221, 334
DpnII	GATC	2 cut(s)	219, 332
DrdI	GACNNNNNNGTC	1 cut(s)	1225
DseDI	GACNNNNNNGTC	1 cut(s)	1225
EaeI	YGGCCR	1 cut(s)	142
Eco105I	TACGTA	1 cut(s)	1031
Eco47I	GGWCC	3 cut(s)	5, 239, 458
Eco57I	CTGAAG	1 cut(s)	708
Eco81I	CCTNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	2 cut(s)	5, 365
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	3 cut(s)	72, 258, 988
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	8 cut(s)	374, 391, 468, 664, 735, 1144, 1150, 1208
FalI	AAGNNNNNCTT	6 cut(s)	445, 477, 1085, 1117, 1249, 1281
FaqI	GGGAC	2 cut(s)	508, 1112
FatI	CATG	8 cut(s)	370, 387, 464, 660, 731, 1140, 1146, 1204
FauNDI	CATATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	1049
Fnu4HI	GCNGC	3 cut(s)	18, 630, 1273
FokI	GGATG	1 cut(s)	1231
Fsp4HI	GCNGC	3 cut(s)	18, 630, 1273
FspBI	CTAG	4 cut(s)	80, 633, 708, 863
GlaI	GCGC	1 cut(s)	1180
GluI	GCNGC	3 cut(s)	18, 630, 1273
GsuI	CTGGAG	1 cut(s)	1050
HaeIII	GGCC	2 cut(s)	144, 367
HapII	CCGG	2 cut(s)	51, 58
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	1181
Hin1II	CATG	8 cut(s)	374, 391, 468, 664, 735, 1144, 1150, 1208
Hin6I	GCGC	1 cut(s)	1179
HinP1I	GCGC	1 cut(s)	1179
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	5 cut(s)	38, 54, 288, 674, 895
HpaII	CCGG	2 cut(s)	51, 58
HphI	GGTGA	3 cut(s)	62, 1012, 1053
Hpy166II	GTNNAC	6 cut(s)	239, 384, 400, 415, 830, 1050
Hpy188I	TCNGA	3 cut(s)	487, 759, 1285
Hpy188III	TCNNGA	6 cut(s)	51, 624, 661, 944, 1147, 1162
Hpy8I	GTNNAC	6 cut(s)	239, 384, 400, 415, 830, 1050
Hpy99I	CGWCG	2 cut(s)	17, 28
HpyAV	CCTTC	1 cut(s)	471
HpyCH4III	ACNGT	6 cut(s)	232, 404, 521, 695, 910, 1129
HpyCH4IV	ACGT	3 cut(s)	347, 854, 1030
HpyCH4V	TGCA	7 cut(s)	280, 343, 400, 593, 930, 1240, 1272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1185
HpyF3I	CTNAG	3 cut(s)	536, 552, 922
HpySE526I	ACGT	3 cut(s)	347, 854, 1030
Hsp92II	CATG	8 cut(s)	374, 391, 468, 664, 735, 1144, 1150, 1208
HspAI	GCGC	1 cut(s)	1179
KflI	GGGWCCC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	219, 332
LmnI	GCTCC	4 cut(s)	262, 433, 601, 1213
Lsp1109I	GCAGC	3 cut(s)	29, 616, 1284
LweI	GCATC	2 cut(s)	76, 323
MaeI	CTAG	4 cut(s)	80, 633, 708, 863
MaeII	ACGT	3 cut(s)	347, 854, 1030
MaeIII	GTNAC	1 cut(s)	1168
MalI	GATC	2 cut(s)	221, 334
MboI	GATC	2 cut(s)	219, 332
MboII	GAAGA	4 cut(s)	669, 701, 1102, 1211
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	4 cut(s)	402, 430, 795, 1011
MlsI	TGGCCA	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	3 cut(s)	48, 282, 889
MmeI	TCCRAC	1 cut(s)	565
Mox20I	TGGCCA	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	1154
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	5 cut(s)	89, 110, 119, 767, 891
MslI	CAYNNNNRTG	3 cut(s)	350, 1130, 1145
Msp20I	TGGCCA	1 cut(s)	144
MspI	CCGG	2 cut(s)	51, 58
MspR9I	CCNGG	3 cut(s)	74, 260, 990
Mva1269I	GAATGC	2 cut(s)	485, 840
MvaI	CCWGG	3 cut(s)	74, 260, 990
MwoI	GCNNNNNNNGC	1 cut(s)	1185
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	2 cut(s)	219, 332
NlaIII	CATG	8 cut(s)	374, 391, 468, 664, 735, 1144, 1150, 1208
NlaIV	GGNNCC	5 cut(s)	6, 7, 366, 531, 792
NmuCI	GTSAC	1 cut(s)	1168
OliI	CACNNNNGTG	2 cut(s)	350, 1130
PagI	TCATGA	2 cut(s)	660, 1146
PctI	GAATGC	2 cut(s)	485, 840
PdmI	GAANNNNTTC	1 cut(s)	1154
PfeI	GAWTC	2 cut(s)	38, 674
PflMI	CCANNNNNTGG	1 cut(s)	447
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	3 cut(s)	19, 631, 1274
PleI	GAGTC	3 cut(s)	48, 282, 889
PpsI	GAGTC	3 cut(s)	48, 282, 889
Ppu21I	YACGTR	1 cut(s)	1031
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	3 cut(s)	72, 258, 988
PspGI	CCWGG	3 cut(s)	72, 258, 988
PspN4I	GGNNCC	5 cut(s)	6, 7, 366, 531, 792
PspPI	GGNCC	4 cut(s)	5, 239, 365, 458
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	1 cut(s)	1033
RsaNI	GTAC	1 cut(s)	1032
RseI	CAYNNNNRTG	3 cut(s)	350, 1130, 1145
SaqAI	TTAA	5 cut(s)	89, 110, 119, 767, 891
SatI	GCNGC	3 cut(s)	18, 630, 1273
Sau3AI	GATC	2 cut(s)	219, 332
Sau96I	GGNCC	4 cut(s)	5, 239, 365, 458
SchI	GAGTC	3 cut(s)	48, 282, 889
ScrFI	CCNGG	3 cut(s)	74, 260, 990
SduI	GDGCHC	4 cut(s)	402, 430, 795, 1011
SfaNI	GCATC	2 cut(s)	76, 323
SinI	GGWCC	3 cut(s)	5, 239, 458
SmiMI	CAYNNNNRTG	3 cut(s)	350, 1130, 1145
SmlI	CTYRAG	1 cut(s)	1193
SmoI	CTYRAG	1 cut(s)	1193
SnaBI	TACGTA	1 cut(s)	1031
SsiI	CCGC	1 cut(s)	533
SspMI	CTAG	4 cut(s)	80, 633, 708, 863
StyD4I	CCNGG	3 cut(s)	72, 258, 988
TaaI	ACNGT	6 cut(s)	232, 404, 521, 695, 910, 1129
TaiI	ACGT	3 cut(s)	350, 857, 1033
TaqI	TCGA	5 cut(s)	26, 844, 945, 1115, 1229
TfiI	GAWTC	2 cut(s)	38, 674
Tru1I	TTAA	5 cut(s)	89, 110, 119, 767, 891
Tru9I	TTAA	5 cut(s)	89, 110, 119, 767, 891
TscAI	CASTG	6 cut(s)	229, 407, 452, 600, 700, 1132
TseFI	GTSAC	1 cut(s)	1168
TseI	GCWGC	3 cut(s)	17, 629, 1272
Tsp45I	GTSAC	1 cut(s)	1168
TspGWI	ACGGA	2 cut(s)	34, 50
TspRI	CASTG	6 cut(s)	229, 407, 452, 600, 700, 1132
Van91I	CCANNNNNTGG	1 cut(s)	447
VneI	GTGCAC	1 cut(s)	398
VpaK11BI	GGWCC	3 cut(s)	5, 239, 458
XapI	RAATTY	2 cut(s)	28, 85
XmiI	GTMKAC	1 cut(s)	1049
XmnI	GAANNNNTTC	1 cut(s)	1154
XspI	CTAG	4 cut(s)	80, 633, 708, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.