Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Forward (+)

2567420 .. 2573448

Gene Structure 6029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2943 bp

ATGGCTGCGGTTCCGCCTGAAAACGGCGTGGACGGAGATGACGAAAGAGAGGAAGAAGAAGAGGACGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGAACGGAGATGAGGCTGAGGAGGAGCCACGTCTCAAATATCAGAGGATGGGTGGCAACGTTCCTGCGTTGCTATCTAACGATGCTGCTTCCTGCATCGCTGTTGCTGCGAGGATGATCGCGCTTGGTACGCACGACGGTACCGTGCGTATCCTCGATTTATTGGGGAATCAGGTTAAAGAATTTCGTGCCCACACTGCTCCGGTTAATGACATCAACTTTGACACTGAGGGAGAGTATATCGGAAGCTGTTCAGACGATGGGTCTGTTGTTATAAACAGCCTTTTCACTGATGATGAGAAGATGAAATTTGATTATCATCGCCCCATGAAGGCCATTTCCTTGGATCCAGATTATACGAAAAAGCAATCTAAGAGATTTGTAGCTGGTGGCTTGGCTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAGGTGCTGCATTCTGGGGAAGGTCCAATTCATTCTGTGAAGTGGAGAGGAAGTCTCATCGCCTGGGCTAATGATGTTGGTGTTAAAGTTTATGATACAGCCAAAGATCAGCGTGTTACATTTATTGAAAAACCGCGAGGAAGCCCCAGGCCTGAGGCTTTACTACCCCACTTGGTTTGGCAGGATGACACTCTCCTTGTGATTGGTTGGGGAACATCAGTTAAAATTGCGTCGATTAAATCAGACCAGCAACAAACTGGAACTTTTAGGCAGATTCAGATGTCTAGTCTAACCCAAGTAGATATTGTGGCATCTTTCCAAACCAGCTATTACATTTCAGGGATTGCTCCCTTTGGTGATTCTCTGGTTATTCTTGCTTATATACCCATTGAAGGAGATGGTGAGAAGGAATTTAGCAGCACCACTACTCTATCGCGTCAGGGAAATGCCCAGAGGCCTGAAATACGCATTGTATCATGGAACAATGATGAACTCACAATGGATGCTCTTCCTGTACACGGCTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCTTTCCCAGGTAGTAGCTACGCTGGGGGACAGTGGGCAGCTGGTGATGAACCACTGTACTATATTGTTTCGCCAAAGGATGTTGTGATTGCCAAACCCAGGGATGCTGAAGATCACATAAACTGGCTTTTGCAACATGGATTCCACGAGAAAGCCCTAGCAGCTGTTGAGGCTAGTGAAGGACGAACCGAACTAATTGATAAGGTGGGAGCTGGGTATCTTGATCATTTGATTGTGGAAAGAAAATATGCTGAAGCGGCATCTTTATGCCCCAAATTGTTACGAGGATCTGCTTCAGCCTGGGAGAGGTGGGTTTTCCATTTTGCTCAACTACGCCAGCTGCCTGTTCTTGTCCCATATATGCCTACGGATAACCCAAGGCTTAAGGATACTGTGTATGAGGTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTGTCAGCGGTTAAATCTTGGCCACGTTCTGTATATTCTGCTTTGACTGTTATCTCAGCAATAGAGCCTCAACTGAACACATCTTCAATGACAGATGCCCTCAAAGAGGCGCTGGCAGAGCTGTATGTAATTGATGGACAGTATCAGAAGGCCTTCTCCCTATATGCTGATCTTCTCAAACCAGAAGTGTTTGACTTCATTGAGAAATACAGCTTGCATGAGGCGATTCGCGGAAAGGTGGTCCAGTTAATGTTGCTTGATTGCAAGCGTGCCACTGTCTTATTTATCCAAAATAGGGATTTGATTCCTCCATCTGAAGTTGTTCCACAACTTCTGAAGGCTGGCAAAAATCCACAAGTTCTGAAAGCTGGCAAAAAATGTGATTCAAGATATTACTTGTACTTATATCTGCATGCATTATTTGAAGTTAGTCATGATACCGGGAAGGATTTTCATGATATGCAGGTAGAACTCTATGCAGAATACGATACTAAGATGCTGCTTCCGTTCCTACGTAGCAGTCAACATTACAAGTTAGAAAAGGCATATGAACTTTGTGTCAAGAAAGATTTTTTAAGAGAGCAAGTGTTTGTCCTGGGAAGGATGGGAAATGCAAAACAAGCTCTTGCAGTCATCATAAATAAACTGGGAGATATAGAAGAGGCTGTGGAATTTGTGTCCATGCAGCACGATGATGATCTATGGGAAGAGCTGATTAAACAATGTCTAAACAAGCCTGAGATGGTGGGCTTGCTGTTGGAGCACACAGTTGGCAACCTCGACCCTCTTTACATTGTAAATATGGTCCCAAATGGCTTGGAAATACCTCGATTAAGGGATCGATTGGTCAAAATCGTAACAGATTACAGAACTGAGACATCTCTTAGACACGGTTGCAATGACATTCTCAAGACGGATATTGTTAATCTTCTGGTCAAATGCTTCAACGAGGCTAGGCGTGGGGTCTGCCTGAGCCATGAAGACGACGATTCCCGTGCGAAGAGAGAAGACAATAATCGCTCATCATTCTCGCAGAGAATGGTAGTAGATAAATCTTTGAGCATAAAGATGACAGAAGTGAAGTCGAAGACACGGGGGGACACACGGTGTTGTATGTGCTTCGACCCGGTCTCGATAAGAGGGGACACTGTAGTGGTCTTCTTCTGCTGCCATGCTTACCACGAGACGTGCCTCATGGATGCAGCCTTCAGTAACAACAATCACAAGACAACCAAAGGTTCTTCGGGGTATGAATATAGCTACGATAACGGTGTGGATGAGGAGGAAGAGGATGAGGAAGAAGATGAGGATGGTGATGGAGACAGACCTGGGCGGTCGCGTTTACGGTGCATATTATGTACTACTGCCGCCGCTGCGTCCGCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

980

Amino Acids

110.28

Weight (kDa)

5.08

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Vps41	PF23411	44 - 400	1.5e-96	Vps42 beta-propeller
WD40_WDHD1_1st	PF24817	63 - 140	9.9e-09	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	63 - 140	1.2e-07	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	65 - 150	3.4e-08	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	69 - 140	2.4e-07	WDR5 beta-propeller domain
TPR_Vps41	PF23556	436 - 785	3.6e-151	Vps41 TPR-like region
Clathrin	PF00637	651 - 763	4.7e-08	Region in Clathrin and VPS
zf-RING_Vps41	PF23555	886 - 933	2.5e-19	Vps41 C-terminal RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	2008
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	522
AccBSI	CCGCTC	1 cut(s)	2936
AccII	CGCG	5 cut(s)	218, 676, 976, 1785, 2893
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	4 cut(s)	437, 450, 1399, 2400
AcoI	YGGCCR	1 cut(s)	1574
AcsI	RAATTY	4 cut(s)	278, 404, 950, 2225
AcuI	CTGAAG	6 cut(s)	1233, 1377, 1383, 1890, 1910, 2746
AdeI	CACNNNGTG	1 cut(s)	2661
AfaI	GTAC	6 cut(s)	226, 238, 1056, 1163, 1955, 2914
AflII	CTTAAG	1 cut(s)	1487
AgsI	TTSAA	6 cut(s)	668, 932, 1641, 1941, 1979, 2500
AhdI	GACNNNNNGTC	1 cut(s)	358
AjiI	CACGTC	2 cut(s)	128, 2742
AjnI	CCWGG	7 cut(s)	602, 686, 1111, 1202, 1403, 2148, 2881
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AleI	CACNNNNGTG	1 cut(s)	2705
Alw21I	GWGCWC	1 cut(s)	2319
Alw26I	GTCTC	6 cut(s)	134, 599, 2423, 2689, 2732, 2868
AlwI	GGATC	4 cut(s)	437, 450, 1399, 2400
AlwNI	CAGNNNCTG	1 cut(s)	547
AoxI	GGCC	5 cut(s)	429, 689, 995, 1574, 1704
ApoI	RAATTY	4 cut(s)	278, 404, 950, 2225
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
Asp700I	GAANNNNTTC	4 cut(s)	346, 524, 1706, 1875
Asp718I	GGTACC	1 cut(s)	236
AspLEI	GCGC	2 cut(s)	220, 1666
AspS9I	GGNCC	3 cut(s)	563, 1795, 2359
AsuC2I	CCSGG	2 cut(s)	1996, 2681
AsuHPI	GGTGA	4 cut(s)	908, 953, 1160, 2879
AvaII	GGWCC	3 cut(s)	563, 1795, 2359
AxyI	CCTNAGG	1 cut(s)	693
BaeGI	GKGCMC	1 cut(s)	289
BaeI	ACNNNNGTAYC	2 cut(s)	220, 253
BalI	TGGCCA	1 cut(s)	1576
BamHI	GGATCC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	236
BauI	CACGAG	2 cut(s)	1250, 2735
BbsI	GAAGAC	4 cut(s)	2541, 2568, 2648, 2704
Bbv12I	GWGCWC	1 cut(s)	2319
BbvCI	CCTCAGC	1 cut(s)	114
BccI	CCATC	9 cut(s)	139, 350, 932, 1682, 1873, 2152, 2290, 2858, 2864
BceAI	ACGGC	2 cut(s)	40, 1075
BcgI	CGANNNNNNTGC	2 cut(s)	2531, 2565
BciT130I	CCWGG	7 cut(s)	604, 688, 1113, 1204, 1405, 2150, 2883
BciVI	GTATCC	2 cut(s)	257, 1486
BclI	TGATCA	1 cut(s)	1327
BcnI	CCSGG	2 cut(s)	1996, 2681
BcoDI	GTCTC	6 cut(s)	134, 599, 2423, 2689, 2732, 2868
BfaI	CTAG	6 cut(s)	825, 1262, 1278, 1514, 1523, 2508
BfmI	CTRYAG	1 cut(s)	2703
BfoI	RGCGCY	1 cut(s)	1667
BfrI	CTTAAG	1 cut(s)	1487
BfuAI	ACCTGC	1 cut(s)	2008
BfuI	GTATCC	2 cut(s)	257, 1486
Bme1390I	CCNGG	9 cut(s)	604, 688, 1113, 1204, 1405, 1996, 2150, 2681, 2883
Bme18I	GGWCC	3 cut(s)	563, 1795, 2359
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgBI	CACGTC	2 cut(s)	128, 2742
BmgT120I	GGNCC	3 cut(s)	563, 1795, 2359
BmiI	GGNNCC	5 cut(s)	12, 123, 238, 444, 2361
BmrFI	CCNGG	9 cut(s)	604, 688, 1113, 1204, 1405, 1996, 2150, 2681, 2883
BmrI	ACTGGG	1 cut(s)	2210
BmsI	GCATC	9 cut(s)	169, 201, 860, 1033, 1198, 1373, 1639, 2040, 2743
BmuI	ACTGGG	1 cut(s)	2210
BpiI	GAAGAC	4 cut(s)	2541, 2568, 2648, 2704
BplI	GAGNNNNNCTC	2 cut(s)	579, 611
Bpu10I	CCTNAGC	2 cut(s)	114, 2525
BpuEI	CTTGAG	1 cut(s)	2447
BpuMI	CCSGG	2 cut(s)	1996, 2681
Bsa29I	ATCGAT	1 cut(s)	2395
BsaAI	YACGTR	1 cut(s)	2069
BsaBI	GATNNNNATC	2 cut(s)	414, 2250
BsaI	GGTCTC	1 cut(s)	2689
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	4 cut(s)	577, 607, 1541, 1571
Bse1I	ACTGG	4 cut(s)	802, 1232, 1798, 2205
Bse21I	CCTNAGG	1 cut(s)	693
Bse3DI	GCAATG	1 cut(s)	2458
Bse8I	GATNNNNATC	2 cut(s)	414, 2250
BseBI	CCWGG	7 cut(s)	604, 688, 1113, 1204, 1405, 2150, 2883
BseCI	ATCGAT	1 cut(s)	2395
BseJI	GATNNNNATC	2 cut(s)	414, 2250
BseMI	GCAATG	1 cut(s)	2458
BseMII	CTCAG	7 cut(s)	105, 315, 684, 1623, 2283, 2418, 2516
BseNI	ACTGG	4 cut(s)	802, 1232, 1798, 2205
BseRI	GAGGAG	5 cut(s)	83, 86, 131, 134, 2849
BseSI	GKGCMC	1 cut(s)	289
BseYI	CCCAGC	2 cut(s)	1127, 1316
Bsh1236I	CGCG	5 cut(s)	218, 676, 976, 1785, 2893
Bsh1285I	CGRYCG	1 cut(s)	2891
BshFI	GGCC	5 cut(s)	431, 691, 997, 1576, 1706
BshNI	GGYRCC	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	2395
BsiEI	CGRYCG	1 cut(s)	2891
BsiHKAI	GWGCWC	1 cut(s)	2319
BsiSI	CCGG	3 cut(s)	299, 1995, 2681
BslFI	GGGAC	5 cut(s)	1146, 1442, 2345, 2666, 2711
BsmAI	GTCTC	6 cut(s)	134, 599, 2423, 2689, 2732, 2868
BsmBI	CGTCTC	2 cut(s)	134, 2732
BsmFI	GGGAC	5 cut(s)	1146, 1442, 2345, 2666, 2711
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	5 cut(s)	431, 691, 997, 1576, 1706
Bso31I	GGTCTC	1 cut(s)	2689
Bsp1286I	GDGCHC	2 cut(s)	289, 2319
Bsp1407I	TGTACA	1 cut(s)	1054
BspANI	GGCC	5 cut(s)	431, 691, 997, 1576, 1706
BspCNI	CTCAG	7 cut(s)	106, 316, 685, 1622, 2284, 2419, 2517
BspDI	ATCGAT	1 cut(s)	2395
BspFNI	CGCG	5 cut(s)	218, 676, 976, 1785, 2893
BspHI	TCATGA	2 cut(s)	1987, 2008
BspLI	GGNNCC	5 cut(s)	12, 123, 238, 444, 2361
BspMI	ACCTGC	1 cut(s)	2008
BspPI	GGATC	4 cut(s)	437, 450, 1399, 2400
BspQI	GCTCTTC	2 cut(s)	1053, 2256
BspT107I	GGYRCC	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	1487
BspTNI	GGTCTC	1 cut(s)	2689
BsrBI	CCGCTC	1 cut(s)	2936
BsrDI	GCAATG	1 cut(s)	2458
BsrGI	TGTACA	1 cut(s)	1054
BsrI	ACTGG	4 cut(s)	802, 1232, 1798, 2205
BssSI	CACGAG	2 cut(s)	1250, 2735
BssT1I	CCWWGG	2 cut(s)	438, 1481
Bst2BI	CACGAG	2 cut(s)	1250, 2735
Bst2UI	CCWGG	7 cut(s)	604, 688, 1113, 1204, 1405, 2150, 2883
Bst6I	CTCTTC	7 cut(s)	54, 90, 1053, 2208, 2256, 2549, 2835
BstAFI	CTTAAG	1 cut(s)	1487
BstAUI	TGTACA	1 cut(s)	1054
BstBAI	YACGTR	1 cut(s)	2069
BstC8I	GCNNGC	9 cut(s)	1442, 1668, 1769, 1820, 1824, 1897, 1924, 1968, 2306
BstENI	CCTNNNNNAGG	3 cut(s)	1110, 1408, 1658
BstFNI	CGCG	5 cut(s)	218, 676, 976, 1785, 2893
BstH2I	RGCGCY	1 cut(s)	1667
BstHHI	GCGC	2 cut(s)	220, 1666
BstMAI	GTCTC	6 cut(s)	134, 599, 2423, 2689, 2732, 2868
BstMCI	CGRYCG	1 cut(s)	2891
BstNI	CCWGG	7 cut(s)	604, 688, 1113, 1204, 1405, 2150, 2883
BstNSI	RCATGY	1 cut(s)	1970
BstSCI	CCNGG	9 cut(s)	602, 686, 1111, 1202, 1403, 1994, 2148, 2679, 2881
BstSFI	CTRYAG	1 cut(s)	2703
BstSLI	GKGCMC	1 cut(s)	289
BstSNI	TACGTA	1 cut(s)	2069
BstUI	CGCG	5 cut(s)	218, 676, 976, 1785, 2893
BstV2I	GAAGAC	4 cut(s)	2541, 2568, 2648, 2704
BstX2I	RGATCY	2 cut(s)	442, 1391
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	2 cut(s)	442, 1391
Bsu15I	ATCGAT	1 cut(s)	2395
Bsu36I	CCTNAGG	1 cut(s)	693
BsuI	GTATCC	2 cut(s)	257, 1486
BsuRI	GGCC	5 cut(s)	431, 691, 997, 1576, 1706
BsuTUI	ATCGAT	1 cut(s)	2395
BtgZI	GCGATG	3 cut(s)	178, 401, 583
BtrI	CACGTC	2 cut(s)	128, 2742
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	7 cut(s)	291, 321, 384, 1142, 1157, 1827, 2700
BveI	ACCTGC	1 cut(s)	2008
Cac8I	GCNNGC	9 cut(s)	1442, 1668, 1769, 1820, 1824, 1897, 1924, 1968, 2306
CaiI	CAGNNNCTG	1 cut(s)	547
CciI	TCATGA	2 cut(s)	1987, 2008
CfoI	GCGC	2 cut(s)	220, 1666
Cfr13I	GGNCC	3 cut(s)	563, 1795, 2359
ClaI	ATCGAT	1 cut(s)	2395
CseI	GACGC	3 cut(s)	759, 965, 2919
Csp6I	GTAC	6 cut(s)	225, 237, 1055, 1162, 1954, 2913
CspCI	CAANNNNNGTGG	2 cut(s)	698, 733
CviQI	GTAC	6 cut(s)	225, 237, 1055, 1162, 1954, 2913
DraIII	CACNNNGTG	1 cut(s)	2661
DriI	GACNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	1574
Eam1104I	CTCTTC	7 cut(s)	54, 90, 1053, 2208, 2256, 2549, 2835
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	7 cut(s)	54, 90, 1053, 2208, 2256, 2549, 2835
Eco105I	TACGTA	1 cut(s)	2069
Eco130I	CCWWGG	2 cut(s)	438, 1481
Eco147I	AGGCCT	3 cut(s)	691, 997, 1706
Eco31I	GGTCTC	1 cut(s)	2689
Eco47I	GGWCC	3 cut(s)	563, 1795, 2359
Eco57I	CTGAAG	6 cut(s)	1233, 1377, 1383, 1890, 1910, 2746
Eco81I	CCTNAGG	1 cut(s)	693
EcoNI	CCTNNNNNAGG	3 cut(s)	1110, 1408, 1658
EcoRII	CCWGG	7 cut(s)	602, 686, 1111, 1202, 1403, 2148, 2881
EcoT14I	CCWWGG	2 cut(s)	438, 1481
EcoT22I	ATGCAT	1 cut(s)	1972
ErhI	CCWWGG	2 cut(s)	438, 1481
Esp3I	CGTCTC	2 cut(s)	134, 2732
FaqI	GGGAC	5 cut(s)	1146, 1442, 2345, 2666, 2711
FauNDI	CATATG	1 cut(s)	2101
FbaI	TGATCA	1 cut(s)	1327
FspBI	CTAG	6 cut(s)	825, 1262, 1278, 1514, 1523, 2508
GlaI	GCGC	2 cut(s)	219, 1665
GsaI	CCCAGC	2 cut(s)	1131, 1320
HaeII	RGCGCY	1 cut(s)	1667
HaeIII	GGCC	5 cut(s)	431, 691, 997, 1576, 1706
HapII	CCGG	3 cut(s)	299, 1995, 2681
HgaI	GACGC	3 cut(s)	759, 965, 2919
HhaI	GCGC	2 cut(s)	220, 1666
Hin6I	GCGC	2 cut(s)	218, 1664
HinP1I	GCGC	2 cut(s)	218, 1664
HincII	GTYRAC	1 cut(s)	2078
HindII	GTYRAC	1 cut(s)	2078
HinfI	GANTC	8 cut(s)	265, 814, 899, 1245, 1780, 1858, 1937, 2543
HpaII	CCGG	3 cut(s)	299, 1995, 2681
HphI	GGTGA	4 cut(s)	908, 953, 1160, 2879
Hpy166II	GTNNAC	4 cut(s)	31, 1057, 2078, 2897
Hpy188I	TCNGA	9 cut(s)	141, 341, 352, 784, 819, 1701, 1870, 1890, 1917
Hpy188III	TCNNGA	8 cut(s)	446, 1325, 1941, 1988, 2009, 2116, 2464, 2686
Hpy8I	GTNNAC	4 cut(s)	31, 1057, 2078, 2897
Hpy99I	CGWCG	3 cut(s)	236, 775, 2543
HpyCH4IV	ACGT	5 cut(s)	127, 156, 1579, 2068, 2741
HpySE526I	ACGT	5 cut(s)	127, 156, 1579, 2068, 2741
HspAI	GCGC	2 cut(s)	218, 1664
KpnI	GGTACC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	1327
LguI	GCTCTTC	2 cut(s)	1053, 2256
LmnI	GCTCC	7 cut(s)	121, 301, 892, 1108, 1313, 1549, 2314
LweI	GCATC	9 cut(s)	169, 201, 860, 1033, 1198, 1373, 1639, 2040, 2743
MaeI	CTAG	6 cut(s)	825, 1262, 1278, 1514, 1523, 2508
MaeII	ACGT	5 cut(s)	127, 156, 1579, 2068, 2741
MaeIII	GTNAC	5 cut(s)	497, 655, 1383, 2410, 2765
MbiI	CCGCTC	1 cut(s)	2936
MflI	RGATCY	2 cut(s)	442, 1391
MhlI	GDGCHC	2 cut(s)	289, 2319
MlsI	TGGCCA	1 cut(s)	1576
MluCI	AATT	9 cut(s)	278, 404, 567, 765, 950, 1299, 1379, 1683, 2225
MluNI	TGGCCA	1 cut(s)	1576
MmeI	TCCRAC	1 cut(s)	2292
Mox20I	TGGCCA	1 cut(s)	1576
Mph1103I	ATGCAT	1 cut(s)	1972
MroXI	GAANNNNTTC	4 cut(s)	346, 524, 1706, 1875
MscI	TGGCCA	1 cut(s)	1576
MslI	CAYNNNNRTG	4 cut(s)	1369, 2247, 2621, 2705
Msp20I	TGGCCA	1 cut(s)	1576
MspA1I	CMGCKG	5 cut(s)	1145, 1268, 1444, 1562, 2927
MspCI	CTTAAG	1 cut(s)	1487
MspI	CCGG	3 cut(s)	299, 1995, 2681
MspR9I	CCNGG	9 cut(s)	604, 688, 1113, 1204, 1405, 1996, 2150, 2681, 2883
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	7 cut(s)	604, 688, 1113, 1204, 1405, 2150, 2883
MvnI	CGCG	5 cut(s)	218, 676, 976, 1785, 2893
NciI	CCSGG	2 cut(s)	1996, 2681
NdeI	CATATG	1 cut(s)	2101
NlaIV	GGNNCC	5 cut(s)	12, 123, 238, 444, 2361
NmuCI	GTSAC	1 cut(s)	497
NsiI	ATGCAT	1 cut(s)	1972
NspI	RCATGY	1 cut(s)	1970
OliI	CACNNNNGTG	1 cut(s)	2705
PaeI	GCATGC	1 cut(s)	1970
PagI	TCATGA	2 cut(s)	1987, 2008
PasI	CCCWGGG	1 cut(s)	1203
PceI	AGGCCT	3 cut(s)	691, 997, 1706
PciSI	GCTCTTC	2 cut(s)	1053, 2256
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 237
PctI	GAATGC	1 cut(s)	550
PdmI	GAANNNNTTC	4 cut(s)	346, 524, 1706, 1875
PfeI	GAWTC	8 cut(s)	265, 814, 899, 1245, 1780, 1858, 1937, 2543
PflFI	GACNNNGTC	1 cut(s)	2681
PflMI	CCANNNNNTGG	1 cut(s)	522
Ppu21I	YACGTR	1 cut(s)	2069
PsiI	TTATAA	1 cut(s)	371
Psp1406I	AACGTT	1 cut(s)	156
Psp6I	CCWGG	7 cut(s)	602, 686, 1111, 1202, 1403, 2148, 2881
PspFI	CCCAGC	2 cut(s)	1127, 1316
PspGI	CCWGG	7 cut(s)	602, 686, 1111, 1202, 1403, 2148, 2881
PspN4I	GGNNCC	5 cut(s)	12, 123, 238, 444, 2361
PspPI	GGNCC	3 cut(s)	563, 1795, 2359
PstNI	CAGNNNCTG	1 cut(s)	547
PsuI	RGATCY	2 cut(s)	442, 1391
PsyI	GACNNNGTC	1 cut(s)	2681
PvuII	CAGCTG	3 cut(s)	1145, 1268, 1444
RsaI	GTAC	6 cut(s)	226, 238, 1056, 1163, 1955, 2914
RsaNI	GTAC	6 cut(s)	225, 237, 1055, 1162, 1954, 2913
RseI	CAYNNNNRTG	4 cut(s)	1369, 2247, 2621, 2705
SapI	GCTCTTC	2 cut(s)	1053, 2256
Sau96I	GGNCC	3 cut(s)	563, 1795, 2359
ScrFI	CCNGG	9 cut(s)	604, 688, 1113, 1204, 1405, 1996, 2150, 2681, 2883
SduI	GDGCHC	2 cut(s)	289, 2319
SfaNI	GCATC	9 cut(s)	169, 201, 860, 1033, 1198, 1373, 1639, 2040, 2743
SfcI	CTRYAG	1 cut(s)	2703
SinI	GGWCC	3 cut(s)	563, 1795, 2359
SmiMI	CAYNNNNRTG	4 cut(s)	1369, 2247, 2621, 2705
SmlI	CTYRAG	2 cut(s)	1487, 2462
SmoI	CTYRAG	2 cut(s)	1487, 2462
SnaBI	TACGTA	1 cut(s)	2069
SphI	GCATGC	1 cut(s)	1970
Sse9I	AATT	9 cut(s)	278, 404, 567, 765, 950, 1299, 1379, 1683, 2225
SseBI	AGGCCT	3 cut(s)	691, 997, 1706
SspMI	CTAG	6 cut(s)	825, 1262, 1278, 1514, 1523, 2508
StuI	AGGCCT	3 cut(s)	691, 997, 1706
StyD4I	CCNGG	9 cut(s)	602, 686, 1111, 1202, 1403, 1994, 2148, 2679, 2881
StyI	CCWWGG	2 cut(s)	438, 1481
TaiI	ACGT	5 cut(s)	130, 159, 1582, 2071, 2744
TaqI	TCGA	8 cut(s)	252, 773, 2334, 2383, 2395, 2639, 2676, 2687
TasI	AATT	9 cut(s)	278, 404, 567, 765, 950, 1299, 1379, 1683, 2225
TatI	WGTACW	4 cut(s)	1054, 1161, 1953, 2912
TauI	GCSGC	3 cut(s)	1364, 2924, 2927
TfiI	GAWTC	8 cut(s)	265, 814, 899, 1245, 1780, 1858, 1937, 2543
TscAI	CASTG	7 cut(s)	298, 328, 391, 1142, 1164, 1834, 2707
TseFI	GTSAC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	497
TspGWI	ACGGA	5 cut(s)	48, 117, 1487, 2049, 2483
TspRI	CASTG	7 cut(s)	298, 328, 391, 1142, 1164, 1834, 2707
Tth111I	GACNNNGTC	1 cut(s)	2681
Van91I	CCANNNNNTGG	1 cut(s)	522
Vha464I	CTTAAG	1 cut(s)	1487
VpaK11BI	GGWCC	3 cut(s)	563, 1795, 2359
XagI	CCTNNNNNAGG	3 cut(s)	1110, 1408, 1658
XapI	RAATTY	4 cut(s)	278, 404, 950, 2225
XceI	RCATGY	1 cut(s)	1970
XcmI	CCANNNNNNNNNTGG	1 cut(s)	794
XmnI	GAANNNNTTC	4 cut(s)	346, 524, 1706, 1875
XspI	CTAG	6 cut(s)	825, 1262, 1278, 1514, 1523, 2508
Zsp2I	ATGCAT	1 cut(s)	1972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.