Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Reverse (-)

61666852 .. 61687913

Gene Structure 21062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG393600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGGCTCCGATTCCGCCAGACAACGGCGTAGAAGGAGACGATGAGCGAGATGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGCCGAGGCTCAAGTACCAGAGAATGGGAGGCAGCATTCCTACGCTTCTAGCGAACGACGTCGCTTCGTGTATCGCCGTGGCGGAGCGGATGATCGCGCTCGGGACGCACGGCGGGACAATTCATATTCTCGATTTTCTCGGCAATCAGGTCAAGGAATTTTCAGCTCATACTGCTGCTGTGAATGATCTTAGCTTTGACATAGAAGGTGAATATATAGGAAGCTGTTCAGATGATGGGTCTGTCATAATAAACAGCCTTTTCACAGACGAGAAAATGAAGTTTGAGTATCATCGCCCTATGAAGGCTATTGCTGTAGATCCAGATTATGCAAAAAAATCATCTAGAAGATTTGTAGCTGGTGGGCTCGCAGGCCACTTATACTTCAATACGAAAAGATGGCTTGGCTTTAAAGATCAGGTTTTGCATTCTGGTGAGGGTCCAATACATGCGGTGAAGTGGAGATCAAGTCTCATTGCTTGGGCTAATGATGCAGGCGTGAAAGTATATGATACCGCAAATGATCAGCGCATAACATTCATAGAAAGACCACGTGGAAGCCCACGTCCTGAGCTTTTGCTCCCTCACTTAGTTTGGCAGGATGACACACTGTTGGTCATTGCTTGGGGAACATCAATCAAAATCACATCAATAAAAACAAATCAGTCTAAAGCAGCCAATGGCTCATATAGGCCTGTCCCAGTTTCCAGTATGAACCAGGTGGATATTGTGGCATCCTTTAGTACCAGCTATTTCATATCGGGAATTGCCCCTTTTGGTGATTCTTTGGTCGTTCTAGCTTATATCCCTGGTGAAGACGATGGGGAGAAGGAATTTAGTAGCTCTGTTCCATCACGTCAGGGAAATGCACAGAGACCAGAAGTACGCGTTGTGACATGGAATAATGATGAACTTTCAACAGATGCCCTTCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCACTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGAAGGTGATGAACCACTGTACTATATTGTATCACCAAAGGATGTGGTCATAGCAAAACCCAGAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTGCACACGAAAAAGCTTTGGCTGCAGTTGAAGCTGGCCAGGGACGAAGTGAACTTCTTGATGAGGTTGGTTCTAGATACCTTGATCATTTGATTGTGGAAAGAAAATATGCCGAAGCAGCATCTTTGTGTCCCAAATTGTTGCGAGGATCGGCATCTGCATGGGAAAGATGGGTTTTCCACTTTGCTCATCTGCGTCAGCTTCCAGTACTAGTGCCATATATACCAACAGAAAACCCAAGATTACGTGATACTGCATATGAGGTTGCTCTTGTGGCTATTGCTACAAACCCATCTTTTCATACGGAGCTCTTGTCAACTGTCAGATCATGGCCACCTGTGATTTATTCTGCATTGCCTGTAATCTCTGCTATAGAACCTCAGCTCAACACATCCTCCATGACAGATGCTCTTAAGGAGGCACTAGCAGAGTTGTATGTGATTGATGGGCAATATGAGAAAGCCTTTTCACTATATGCTGATCTTATGAACCCAAATGTATTTGCCTTCATCGAAAAACACAATCTGTATGATTCGATTCGGGAAAAGGTCGTCCCACTGATGATGCTGGATTGCAAGCATGCTGTTCCTTTATTGATTCAAAATAAGGACTTGATTACTCCGTCTCAAGTTGTCAAACAACTTTTGAATGCGAGTGATAAGTGCGATTCCAGAAATTACTTGCATCTATATTTGCATTCACTATTTGAAGTAGACCCTCATGCTGGAAAAGATTTCCATGATATGCAGGTAGAGCTTTATGCAGACTATGATTCAAAGATGCTGCTTCCTTTTCTTCGTAGTAGTCAACATTATACACTTGAGAAGGCATATGAAATTTGCATCAGAAAGGATCTTGTAAAGGAGCAAGTTTTCATTCTTGGAAGAATGGGAAATGCAAAACAAGCCCTTGCTATAATCATTAATAAACTAGGGGACATTGAAGAGGCTGTTGAATTTGTGAGTATGCAACATGATGATGAACTATGGGAGGAATTGATCCAGCAGTGTCTTCATAAACCTGAGATGGTCGGCGTGCTATTGGAGCACACTGTTGGAAATCTTGATCCTCTTTATATTGTGAATATGGTTCCCAATGGACTGGAGATTCCTCTGTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

790

Amino Acids

88.59

Weight (kDa)

4.82

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Vps41	PF23411	46 - 402	1.8e-99	Vps42 beta-propeller
Beta-prop_WDR3_1st	PF25173	66 - 135	2.5e-06	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	66 - 136	3.3e-06	WDHD1 first WD40 domain
TPR_Vps41	PF23556	438 - 778	1.1e-148	Vps41 TPR-like region
Clathrin	PF00637	638 - 756	1.6e-09	Region in Clathrin and VPS

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
Acc36I	ACCTGC	1 cut(s)	1987
AccB7I	CCANNNNNTGG	1 cut(s)	151
AccBSI	CCGCTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	1962
AccII	CGCG	2 cut(s)	224, 1014
AciI	CCGC	6 cut(s)	14, 209, 214, 240, 578, 642
AclWI	GGATC	5 cut(s)	440, 1405, 2109, 2242, 2309
AcoI	YGGCCR	2 cut(s)	1285, 1580
AcsI	RAATTY	4 cut(s)	284, 959, 2085, 2204
AcuI	CTGAAG	2 cut(s)	1170, 1239
AcvI	CACGTG	1 cut(s)	680
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	6 cut(s)	143, 871, 1011, 1062, 1169, 1458
AfiI	CCNNNNNNNGG	6 cut(s)	23, 151, 430, 1064, 1118, 1973
AflII	CTTAAG	1 cut(s)	1661
AflIII	ACRYGT	1 cut(s)	1012
AhlI	ACTAGT	1 cut(s)	1459
AjiI	CACGTC	2 cut(s)	692, 983
AjnI	CCWGG	3 cut(s)	843, 934, 1287
Alw21I	GWGCWC	3 cut(s)	1255, 1560, 2298
Alw26I	GTCTC	4 cut(s)	30, 602, 994, 1878
Alw44I	GTGCAC	1 cut(s)	1251
AlwI	GGATC	5 cut(s)	440, 1405, 2109, 2242, 2309
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	4 cut(s)	499, 818, 1285, 1580
ApaLI	GTGCAC	1 cut(s)	1251
ApeKI	GCWGC	7 cut(s)	159, 302, 800, 1125, 1271, 1367, 2032
ApoI	RAATTY	4 cut(s)	284, 959, 2085, 2204
AseI	ATTAAT	1 cut(s)	2172
Asp700I	GAANNNNTTC	1 cut(s)	352
AspLEI	GCGC	2 cut(s)	226, 657
AspS9I	GGNCC	1 cut(s)	566
AsuHPI	GGTGA	7 cut(s)	347, 572, 592, 917, 950, 1166, 1173
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	566
BaeGI	GKGCMC	1 cut(s)	1255
BalI	TGGCCA	2 cut(s)	1287, 1582
BanII	GRGCYC	2 cut(s)	495, 1560
BbrPI	CACGTG	1 cut(s)	680
BbsI	GAAGAC	2 cut(s)	948, 2252
Bbv12I	GWGCWC	3 cut(s)	1255, 1560, 2298
BbvCI	CCTCAGC	1 cut(s)	1629
BbvI	GCAGC	7 cut(s)	171, 289, 812, 1137, 1258, 1379, 2019
BccI	CCATC	8 cut(s)	356, 519, 941, 985, 1413, 1549, 1688, 2269
BceAI	ACGGC	3 cut(s)	40, 188, 253
BciT130I	CCWGG	3 cut(s)	845, 936, 1289
BclI	TGATCA	2 cut(s)	649, 1333
BcoDI	GTCTC	4 cut(s)	30, 602, 994, 1878
BcuI	ACTAGT	1 cut(s)	1459
BfaI	CTAG	7 cut(s)	176, 471, 923, 1323, 1460, 1673, 2180
BfmI	CTRYAG	3 cut(s)	441, 1272, 1620
BfrI	CTTAAG	1 cut(s)	1661
BfuAI	ACCTGC	1 cut(s)	1987
BisI	GCNGC	7 cut(s)	160, 303, 801, 1126, 1272, 1368, 2033
BlsI	GCNGC	7 cut(s)	161, 304, 802, 1127, 1273, 1369, 2034
BmcAI	AGTACT	1 cut(s)	1458
Bme1390I	CCNGG	3 cut(s)	845, 936, 1289
Bme18I	GGWCC	1 cut(s)	566
BmeT110I	CYCGRG	1 cut(s)	227
BmgBI	CACGTC	2 cut(s)	692, 983
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	4 cut(s)	6, 129, 567, 2340
BmrFI	CCNGG	3 cut(s)	845, 936, 1289
BmrI	ACTGGG	1 cut(s)	821
BmuI	ACTGGG	1 cut(s)	821
BpiI	GAAGAC	2 cut(s)	948, 2252
BpmI	CTGGAG	1 cut(s)	2372
Bpu10I	CCTNAGC	2 cut(s)	696, 1629
BpuEI	CTTGAG	3 cut(s)	122, 1860, 2090
BsaAI	YACGTR	2 cut(s)	680, 1496
BsaBI	GATNNNNATC	1 cut(s)	1402
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	994
BsaJI	CCNNGG	4 cut(s)	131, 204, 934, 1288
BsaXI	ACNNNNNCTCC	6 cut(s)	580, 610, 1547, 1577, 1628, 1658
Bsc4I	CCNNNNNNNGG	6 cut(s)	23, 151, 430, 1064, 1118, 1973
Bse1I	ACTGG	4 cut(s)	827, 834, 1454, 2355
Bse3DI	GCAATG	3 cut(s)	600, 744, 1601
Bse8I	GATNNNNATC	1 cut(s)	1402
BseBI	CCWGG	3 cut(s)	845, 936, 1289
BseDI	CCNNGG	4 cut(s)	131, 204, 934, 1288
BseGI	GGATG	5 cut(s)	222, 733, 860, 1195, 1640
BseJI	GATNNNNATC	1 cut(s)	1402
BseLI	CCNNNNNNNGG	6 cut(s)	23, 151, 430, 1064, 1118, 1973
BseMI	GCAATG	3 cut(s)	600, 744, 1601
BseMII	CTCAG	4 cut(s)	687, 1131, 1643, 2262
BseNI	ACTGG	4 cut(s)	827, 834, 1454, 2355
BseSI	GKGCMC	1 cut(s)	1255
BseXI	GCAGC	7 cut(s)	171, 289, 812, 1137, 1258, 1379, 2019
Bsh1236I	CGCG	2 cut(s)	224, 1014
BshFI	GGCC	4 cut(s)	501, 820, 1287, 1582
BsiHKAI	GWGCWC	3 cut(s)	1255, 1560, 2298
BsiHKCI	CYCGRG	1 cut(s)	227
BslFI	GGGAC	7 cut(s)	244, 256, 809, 1305, 1365, 1787, 2198
BslI	CCNNNNNNNGG	6 cut(s)	23, 151, 430, 1064, 1118, 1973
BsmAI	GTCTC	4 cut(s)	30, 602, 994, 1878
BsmBI	CGTCTC	2 cut(s)	30, 1878
BsmFI	GGGAC	7 cut(s)	244, 256, 809, 1305, 1365, 1787, 2198
BsmI	GAATGC	4 cut(s)	162, 553, 1903, 1945
BsnI	GGCC	4 cut(s)	501, 820, 1287, 1582
Bso31I	GGTCTC	1 cut(s)	994
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	4 cut(s)	495, 1255, 1560, 2298
Bsp1407I	TGTACA	1 cut(s)	1060
BspACI	CCGC	6 cut(s)	14, 209, 214, 240, 578, 642
BspANI	GGCC	4 cut(s)	501, 820, 1287, 1582
BspCNI	CTCAG	4 cut(s)	688, 1130, 1642, 2263
BspFNI	CGCG	2 cut(s)	224, 1014
BspLI	GGNNCC	4 cut(s)	6, 129, 567, 2340
BspMAI	CTGCAG	1 cut(s)	1276
BspMI	ACCTGC	1 cut(s)	1987
BspPI	GGATC	5 cut(s)	440, 1405, 2109, 2242, 2309
BspTI	CTTAAG	1 cut(s)	1661
BspTNI	GGTCTC	1 cut(s)	994
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	3 cut(s)	600, 744, 1601
BsrGI	TGTACA	1 cut(s)	1060
BsrI	ACTGG	4 cut(s)	827, 834, 1454, 2355
BssECI	CCNNGG	4 cut(s)	131, 204, 934, 1288
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	845, 936, 1289
Bst4CI	ACNGT	4 cut(s)	738, 1167, 1570, 2302
Bst6I	CTCTTC	5 cut(s)	60, 96, 102, 111, 2187
BstACI	GRCGYC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	1661
BstAUI	TGTACA	1 cut(s)	1060
BstBAI	YACGTR	2 cut(s)	680, 1496
BstC8I	GCNNGC	7 cut(s)	495, 499, 622, 1285, 1826, 1830, 2285
BstDEI	CTNAG	6 cut(s)	317, 696, 715, 1117, 1629, 2271
BstDSI	CCRYGG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	1116
BstF5I	GGATG	5 cut(s)	222, 733, 860, 1195, 1640
BstFNI	CGCG	2 cut(s)	224, 1014
BstHHI	GCGC	2 cut(s)	226, 657
BstMAI	GTCTC	4 cut(s)	30, 602, 994, 1878
BstNI	CCWGG	3 cut(s)	845, 936, 1289
BstNSI	RCATGY	2 cut(s)	578, 1832
BstSCI	CCNGG	3 cut(s)	843, 934, 1287
BstSFI	CTRYAG	3 cut(s)	441, 1272, 1620
BstSLI	GKGCMC	1 cut(s)	1255
BstUI	CGCG	2 cut(s)	224, 1014
BstV1I	GCAGC	7 cut(s)	171, 289, 812, 1137, 1258, 1379, 2019
BstV2I	GAAGAC	2 cut(s)	948, 2252
BstX2I	RGATCY	2 cut(s)	445, 2101
BstXI	CCANNNNNNTGG	1 cut(s)	2350
BstYI	RGATCY	2 cut(s)	445, 2101
BsuRI	GGCC	4 cut(s)	501, 820, 1287, 1582
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	404
BtrI	CACGTC	2 cut(s)	692, 983
BtsCI	GGATG	5 cut(s)	222, 733, 860, 1195, 1640
BtsI	GCAGTG	1 cut(s)	2261
BtsIMutI	CAGTG	6 cut(s)	734, 1148, 1163, 1805, 2261, 2298
BveI	ACCTGC	1 cut(s)	1987
Cac8I	GCNNGC	7 cut(s)	495, 499, 622, 1285, 1826, 1830, 2285
CfoI	GCGC	2 cut(s)	226, 657
Cfr13I	GGNCC	1 cut(s)	566
CseI	GACGC	2 cut(s)	241, 1433
CsiI	ACCWGGT	1 cut(s)	843
Csp6I	GTAC	6 cut(s)	142, 870, 1010, 1061, 1168, 1457
CspCI	CAANNNNNGTGG	2 cut(s)	1173, 1208
CviQI	GTAC	6 cut(s)	142, 870, 1010, 1061, 1168, 1457
DdeI	CTNAG	6 cut(s)	317, 696, 715, 1117, 1629, 2271
DraI	TTTAAA	1 cut(s)	538
EaeI	YGGCCR	2 cut(s)	1285, 1580
Eam1104I	CTCTTC	5 cut(s)	60, 96, 102, 111, 2187
EarI	CTCTTC	5 cut(s)	60, 96, 102, 111, 2187
EciI	GGCGGA	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	1558
Eco147I	AGGCCT	1 cut(s)	820
Eco24I	GRGCYC	2 cut(s)	495, 1560
Eco31I	GGTCTC	1 cut(s)	994
Eco47I	GGWCC	1 cut(s)	566
Eco53kI	GAGCTC	1 cut(s)	1558
Eco57I	CTGAAG	2 cut(s)	1170, 1239
Eco72I	CACGTG	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	1558
EcoNI	CCTNNNNNAGG	1 cut(s)	1116
EcoRII	CCWGG	3 cut(s)	843, 934, 1287
EcoT38I	GRGCYC	2 cut(s)	495, 1560
Esp3I	CGTCTC	2 cut(s)	30, 1878
FaqI	GGGAC	7 cut(s)	244, 256, 809, 1305, 1365, 1787, 2198
FauI	CCCGC	1 cut(s)	233
FauNDI	CATATG	2 cut(s)	1507, 2080
FbaI	TGATCA	2 cut(s)	649, 1333
FblI	GTMKAC	1 cut(s)	1962
Fnu4HI	GCNGC	7 cut(s)	160, 303, 801, 1126, 1272, 1368, 2033
FokI	GGATG	5 cut(s)	229, 740, 847, 1202, 1627
FriOI	GRGCYC	2 cut(s)	495, 1560
Fsp4HI	GCNGC	7 cut(s)	160, 303, 801, 1126, 1272, 1368, 2033
FspBI	CTAG	7 cut(s)	176, 471, 923, 1323, 1460, 1673, 2180
GlaI	GCGC	2 cut(s)	225, 656
GluI	GCNGC	7 cut(s)	160, 303, 801, 1126, 1272, 1368, 2033
GsuI	CTGGAG	1 cut(s)	2372
HaeIII	GGCC	4 cut(s)	501, 820, 1287, 1582
HgaI	GACGC	2 cut(s)	241, 1433
HhaI	GCGC	2 cut(s)	226, 657
Hin1I	GRCGYC	1 cut(s)	186
Hin6I	GCGC	2 cut(s)	224, 655
HinP1I	GCGC	2 cut(s)	224, 655
HincII	GTYRAC	2 cut(s)	1566, 2057
HindII	GTYRAC	2 cut(s)	1566, 2057
HindIII	AAGCTT	1 cut(s)	1263
HinfI	GANTC	8 cut(s)	10, 908, 1781, 1786, 1846, 1916, 2021, 2356
HphI	GGTGA	7 cut(s)	347, 572, 592, 917, 950, 1166, 1173
Hpy166II	GTNNAC	5 cut(s)	1253, 1301, 1566, 1963, 2057
Hpy188I	TCNGA	4 cut(s)	9, 358, 1574, 2096
Hpy8I	GTNNAC	5 cut(s)	1253, 1301, 1566, 1963, 2057
Hpy99I	CGWCG	2 cut(s)	188, 191
HpyAV	CCTTC	8 cut(s)	26, 326, 424, 949, 1064, 1145, 1765, 2068
HpyCH4III	ACNGT	4 cut(s)	738, 1167, 1570, 2302
HpyCH4IV	ACGT	5 cut(s)	186, 679, 691, 982, 1495
HpyF3I	CTNAG	6 cut(s)	317, 696, 715, 1117, 1629, 2271
HpySE526I	ACGT	5 cut(s)	186, 679, 691, 982, 1495
Hsp92I	GRCGYC	1 cut(s)	186
HspAI	GCGC	2 cut(s)	224, 655
Ksp22I	TGATCA	2 cut(s)	649, 1333
LmnI	GCTCC	8 cut(s)	10, 127, 211, 711, 1114, 1555, 2113, 2293
Lsp1109I	GCAGC	7 cut(s)	171, 289, 812, 1137, 1258, 1379, 2019
MabI	ACCWGGT	1 cut(s)	843
MaeI	CTAG	7 cut(s)	176, 471, 923, 1323, 1460, 1673, 2180
MaeII	ACGT	5 cut(s)	186, 679, 691, 982, 1495
MaeIII	GTNAC	1 cut(s)	1018
MbiI	CCGCTC	1 cut(s)	214
MflI	RGATCY	2 cut(s)	445, 2101
MhlI	GDGCHC	4 cut(s)	495, 1255, 1560, 2298
MlsI	TGGCCA	2 cut(s)	1287, 1582
MluCI	AATT	9 cut(s)	246, 284, 891, 959, 1385, 1924, 2085, 2204, 2243
MluI	ACGCGT	1 cut(s)	1012
MluNI	TGGCCA	2 cut(s)	1287, 1582
MmeI	TCCRAC	1 cut(s)	2284
Mox20I	TGGCCA	2 cut(s)	1287, 1582
MroXI	GAANNNNTTC	1 cut(s)	352
MscI	TGGCCA	2 cut(s)	1287, 1582
MseI	TTAA	3 cut(s)	537, 1662, 2172
MslI	CAYNNNNRTG	4 cut(s)	558, 1375, 1408, 2226
Msp20I	TGGCCA	2 cut(s)	1287, 1582
MspCI	CTTAAG	1 cut(s)	1661
MspR9I	CCNGG	3 cut(s)	845, 936, 1289
Mva1269I	GAATGC	4 cut(s)	162, 553, 1903, 1945
MvaI	CCWGG	3 cut(s)	845, 936, 1289
MvnI	CGCG	2 cut(s)	224, 1014
NdeI	CATATG	2 cut(s)	1507, 2080
NlaIV	GGNNCC	4 cut(s)	6, 129, 567, 2340
NmeAIII	GCCGAG	2 cut(s)	156, 246
NmuCI	GTSAC	1 cut(s)	1018
NspI	RCATGY	2 cut(s)	578, 1832
PaeI	GCATGC	1 cut(s)	1832
PceI	AGGCCT	1 cut(s)	820
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PctI	GAATGC	4 cut(s)	162, 553, 1903, 1945
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	8 cut(s)	10, 908, 1781, 1786, 1846, 1916, 2021, 2356
PflMI	CCANNNNNTGG	1 cut(s)	151
PkrI	GCNGC	7 cut(s)	161, 304, 802, 1127, 1273, 1369, 2034
PmaCI	CACGTG	1 cut(s)	680
PmlI	CACGTG	1 cut(s)	680
Ppu21I	YACGTR	2 cut(s)	680, 1496
PshBI	ATTAAT	1 cut(s)	2172
Psp124BI	GAGCTC	1 cut(s)	1560
Psp6I	CCWGG	3 cut(s)	843, 934, 1287
PspCI	CACGTG	1 cut(s)	680
PspGI	CCWGG	3 cut(s)	843, 934, 1287
PspN4I	GGNNCC	4 cut(s)	6, 129, 567, 2340
PspPI	GGNCC	1 cut(s)	566
PstI	CTGCAG	1 cut(s)	1276
PsuI	RGATCY	2 cut(s)	445, 2101
RsaI	GTAC	6 cut(s)	143, 871, 1011, 1062, 1169, 1458
RsaNI	GTAC	6 cut(s)	142, 870, 1010, 1061, 1168, 1457
RseI	CAYNNNNRTG	4 cut(s)	558, 1375, 1408, 2226
SacI	GAGCTC	1 cut(s)	1560
SaqAI	TTAA	3 cut(s)	537, 1662, 2172
SatI	GCNGC	7 cut(s)	160, 303, 801, 1126, 1272, 1368, 2033
Sau96I	GGNCC	1 cut(s)	566
ScaI	AGTACT	1 cut(s)	1458
ScrFI	CCNGG	3 cut(s)	845, 936, 1289
SduI	GDGCHC	4 cut(s)	495, 1255, 1560, 2298
SexAI	ACCWGGT	1 cut(s)	843
SfcI	CTRYAG	3 cut(s)	441, 1272, 1620
SinI	GGWCC	1 cut(s)	566
SmiMI	CAYNNNNRTG	4 cut(s)	558, 1375, 1408, 2226
SmlI	CTYRAG	4 cut(s)	137, 1661, 1875, 2069
SmoI	CTYRAG	4 cut(s)	137, 1661, 1875, 2069
SpeI	ACTAGT	1 cut(s)	1459
SphI	GCATGC	1 cut(s)	1832
Sse9I	AATT	9 cut(s)	246, 284, 891, 959, 1385, 1924, 2085, 2204, 2243
SseBI	AGGCCT	1 cut(s)	820
SsiI	CCGC	6 cut(s)	14, 209, 214, 240, 578, 642
SspMI	CTAG	7 cut(s)	176, 471, 923, 1323, 1460, 1673, 2180
SstI	GAGCTC	1 cut(s)	1560
StuI	AGGCCT	1 cut(s)	820
StyD4I	CCNGG	3 cut(s)	843, 934, 1287
TaaI	ACNGT	4 cut(s)	738, 1167, 1570, 2302
TaiI	ACGT	5 cut(s)	189, 682, 694, 985, 1498
TaqI	TCGA	3 cut(s)	258, 1761, 1784
TasI	AATT	9 cut(s)	246, 284, 891, 959, 1385, 1924, 2085, 2204, 2243
TatI	WGTACW	3 cut(s)	1060, 1167, 1456
TfiI	GAWTC	8 cut(s)	10, 908, 1781, 1786, 1846, 1916, 2021, 2356
Tru1I	TTAA	3 cut(s)	537, 1662, 2172
Tru9I	TTAA	3 cut(s)	537, 1662, 2172
TscAI	CASTG	6 cut(s)	741, 1148, 1170, 1812, 2261, 2305
TseFI	GTSAC	1 cut(s)	1018
TseI	GCWGC	7 cut(s)	159, 302, 800, 1125, 1271, 1367, 2032
Tsp45I	GTSAC	1 cut(s)	1018
TspGWI	ACGGA	2 cut(s)	1568, 1860
TspRI	CASTG	6 cut(s)	741, 1148, 1170, 1812, 2261, 2305
Van91I	CCANNNNNTGG	1 cut(s)	151
Vha464I	CTTAAG	1 cut(s)	1661
VneI	GTGCAC	1 cut(s)	1251
VpaK11BI	GGWCC	1 cut(s)	566
VspI	ATTAAT	1 cut(s)	2172
XagI	CCTNNNNNAGG	1 cut(s)	1116
XapI	RAATTY	4 cut(s)	284, 959, 2085, 2204
XbaI	TCTAGA	2 cut(s)	470, 1322
XceI	RCATGY	2 cut(s)	578, 1832
XmiI	GTMKAC	1 cut(s)	1962
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	7 cut(s)	176, 471, 923, 1323, 1460, 1673, 2180
ZraI	GACGTC	1 cut(s)	187
ZrmI	AGTACT	1 cut(s)	1458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.